RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 UBR4Q5T4S7 5183 aa7.29□□□□□ -1.24
COL4A6-206ENST00000477085 PSPHP1O15172 72 aa7.27□□□□□ -1.25
COL4A6-206ENST00000477085 KRTAP19-2Q3LHN2 52 aa7.23□□□□□ -1.25
COL4A6-206ENST00000477085 LINC01558Q9Y6Z2 57 aa7.23□□□□□ -1.25
COL4A6-206ENST00000477085 CHKB-CPT1BH3BT56 60 aa7.23□□□□□ -1.25
COL4A6-206ENST00000477085 Q5VV11 94 aa7.23□□□□□ -1.25
COL4A6-206ENST00000477085 PRR15LQ9BU68 103 aa7.23□□□□□ -1.25
COL4A6-206ENST00000477085 RBM12B-AS1Q9P1G2 102 aa7.21□□□□□ -1.25
COL4A6-206ENST00000477085 RNF213Q63HN8 5207 aa7.2□□□□□ -1.26
COL4A6-206ENST00000477085 H1FX-AS1Q4G0G2 97 aa7.18□□□□□ -1.26
COL4A6-206ENST00000477085 SVIPQ8NHG7 77 aa7.18□□□□□ -1.26
COL4A6-206ENST00000477085 BRK1Q8WUW1 75 aa7.16□□□□□ -1.26
COL4A6-206ENST00000477085 LCA10Q71F78 164 aa7.15□□□□□ -1.26
COL4A6-206ENST00000477085 PRO0628Q9UI54 55 aa7.14□□□□□ -1.27
COL4A6-206ENST00000477085 S4R3F8 94 aa7.11□□□□□ -1.27
COL4A6-206ENST00000477085 LCE2CQ5TA81 110 aa7.06□□□□□ -1.28
COL4A6-206ENST00000477085 A6NED7 52 aa7.03□□□□□ -1.28
COL4A6-206ENST00000477085 FLGP20930 4061 aaPredicted RBP7.03□□□□□ -1.28
COL4A6-206ENST00000477085 SPTSSBQ8NFR3 76 aa7.03□□□□□ -1.28
COL4A6-206ENST00000477085 A0A1B0GU69 56 aa7.02□□□□□ -1.29
COL4A6-206ENST00000477085 FAT4Q6V0I7 4981 aa7□□□□□ -1.29
COL4A6-206ENST00000477085 A8MU10 97 aa6.99□□□□□ -1.29
COL4A6-206ENST00000477085 CDC42SE1Q9NRR8 79 aa6.97□□□□□ -1.29
COL4A6-206ENST00000477085 CSAG1Q6PB30 78 aa6.95□□□□□ -1.3
COL4A6-206ENST00000477085 KRTAP10-6P60371 365 aaPredicted RBP6.88□□□□□ -1.31
COL4A6-206ENST00000477085 MT1HP80294 61 aa6.88□□□□□ -1.31
COL4A6-206ENST00000477085 SEC61GP60059 68 aa6.87□□□□□ -1.31
COL4A6-206ENST00000477085 UQCR11O14957 56 aa6.85□□□□□ -1.31
COL4A6-206ENST00000477085 P0C880 135 aa6.83□□□□□ -1.32
COL4A6-206ENST00000477085 SPATA8Q6RVD6 105 aa6.83□□□□□ -1.32
COL4A6-206ENST00000477085 ADM2Q7Z4H4 148 aa6.83□□□□□ -1.32
COL4A6-206ENST00000477085 H0YAA0 97 aa6.8□□□□□ -1.32
COL4A6-206ENST00000477085 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
COL4A6-206ENST00000477085 A0A1B0GU33 70 aa6.75□□□□□ -1.33
COL4A6-206ENST00000477085 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
COL4A6-206ENST00000477085 A6NN06 94 aa6.74□□□□□ -1.33
COL4A6-206ENST00000477085 M0R2T5 61 aa6.74□□□□□ -1.33
COL4A6-206ENST00000477085 LORP23490 312 aaPredicted RBP6.72□□□□□ -1.33
COL4A6-206ENST00000477085 KRTAP13-4Q3LI77 160 aa6.71□□□□□ -1.34
COL4A6-206ENST00000477085 KRTAP9-8Q9BYQ0 159 aa6.65□□□□□ -1.34
COL4A6-206ENST00000477085 LCE2AQ5TA79 106 aaPredicted RBP6.64□□□□□ -1.35
COL4A6-206ENST00000477085 MT2AP02795 61 aa6.61□□□□□ -1.35
COL4A6-206ENST00000477085 KTN1-AS1Q86SY8 53 aa6.59□□□□□ -1.35
COL4A6-206ENST00000477085 MT1FP04733 61 aa6.58□□□□□ -1.36
COL4A6-206ENST00000477085 M0QZ58 72 aa6.56□□□□□ -1.36
COL4A6-206ENST00000477085 R4GN34 69 aa6.54□□□□□ -1.36
COL4A6-206ENST00000477085 A0A0D9SG42 100 aa6.52□□□□□ -1.37
COL4A6-206ENST00000477085 KRTAP10-10P60014 251 aa6.51□□□□□ -1.37
COL4A6-206ENST00000477085 CRIPTQ9P021 101 aa6.48□□□□□ -1.37
COL4A6-206ENST00000477085 KRTAP19-1Q8IUB9 90 aa6.46□□□□□ -1.37
COL4A6-206ENST00000477085 LINC01554Q52M75 96 aa6.45□□□□□ -1.38
COL4A6-206ENST00000477085 SPRR2GQ9BYE4 73 aa6.44□□□□□ -1.38
COL4A6-206ENST00000477085 K7ERS5 55 aa6.41□□□□□ -1.38
COL4A6-206ENST00000477085 KRTAP12-1P59990 96 aa6.41□□□□□ -1.38
COL4A6-206ENST00000477085 KRTAP12-2P59991 146 aa6.41□□□□□ -1.38
COL4A6-206ENST00000477085 KRTAP9-3Q9BYQ3 159 aa6.4□□□□□ -1.38
COL4A6-206ENST00000477085 PRAC1Q96KF2 57 aa6.35□□□□□ -1.39
COL4A6-206ENST00000477085 SPINT4Q6UDR6 99 aa6.34□□□□□ -1.39
COL4A6-206ENST00000477085 LCE2BO14633 110 aa6.32□□□□□ -1.4
COL4A6-206ENST00000477085 KRTAP19-8Q3LI54 63 aa6.27□□□□□ -1.41
COL4A6-206ENST00000477085 MT1BP07438 61 aa6.23□□□□□ -1.41
COL4A6-206ENST00000477085 ROMO1P60602 79 aa6.23□□□□□ -1.41
COL4A6-206ENST00000477085 LOC100996750A0A140TA64 210 aa6.18□□□□□ -1.42
COL4A6-206ENST00000477085 KRTAP4-6Q9BYQ5 205 aa6.18□□□□□ -1.42
COL4A6-206ENST00000477085 PLAC4Q8WY50 150 aa6.14□□□□□ -1.43
COL4A6-206ENST00000477085 USH2AO75445 5202 aa6.13□□□□□ -1.43
COL4A6-206ENST00000477085 KRTAP25-1Q3LHN0 102 aa6.13□□□□□ -1.43
COL4A6-206ENST00000477085 CAMK2N1Q7Z7J9 78 aa6.11□□□□□ -1.43
COL4A6-206ENST00000477085 C10orf95Q9H7T3 257 aa6.09□□□□□ -1.43
COL4A6-206ENST00000477085 KRTAP10-5P60370 271 aa6.01□□□□□ -1.45
COL4A6-206ENST00000477085 MT1XP80297 61 aa6.01□□□□□ -1.45
COL4A6-206ENST00000477085 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
COL4A6-206ENST00000477085 SSPOA2VEC9 5147 aa5.93□□□□□ -1.46
COL4A6-206ENST00000477085 PRO2289Q9P1D8 64 aa5.83□□□□□ -1.48
COL4A6-206ENST00000477085 KRTAP19-6Q3LI70 58 aa5.82□□□□□ -1.48
COL4A6-206ENST00000477085 TNP1P09430 55 aa5.81□□□□□ -1.48
COL4A6-206ENST00000477085 KRTAP9-2Q9BYQ4 174 aa5.8□□□□□ -1.48
COL4A6-206ENST00000477085 KRTAP10-7P60409 375 aaPredicted RBP5.79□□□□□ -1.48
COL4A6-206ENST00000477085 KRTAP10-12P60413 245 aa5.68□□□□□ -1.5
COL4A6-206ENST00000477085 FCGBPQ9Y6R7 5405 aaPredicted RBP5.68□□□□□ -1.5
COL4A6-206ENST00000477085 PP632Q6XCG6 107 aa5.66□□□□□ -1.5
COL4A6-206ENST00000477085 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
COL4A6-206ENST00000477085 KMT2DO14686 5537 aa5.64□□□□□ -1.51
COL4A6-206ENST00000477085 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
COL4A6-206ENST00000477085 KRTAP4-8A0A0G2JLE6 195 aa5.59□□□□□ -1.51
COL4A6-206ENST00000477085 KRTAP4-8Q9BYQ9 185 aa5.59□□□□□ -1.51
COL4A6-206ENST00000477085 CRCT1Q9UGL9 99 aa5.57□□□□□ -1.52
COL4A6-206ENST00000477085 KRTAP8-1Q8IUC2 63 aa5.51□□□□□ -1.53
COL4A6-206ENST00000477085 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
COL4A6-206ENST00000477085 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.44□□□□□ -1.54
COL4A6-206ENST00000477085 KRTAP19-5Q3LI72 72 aa5.42□□□□□ -1.54
COL4A6-206ENST00000477085 KRTAP9-6A0A140TA67 174 aa5.42□□□□□ -1.54
COL4A6-206ENST00000477085 KRTAP12-3P60328 96 aa5.39□□□□□ -1.55
COL4A6-206ENST00000477085 MACF1Q9UPN3 7388 aaKnown RBP5.39□□□□□ -1.55
COL4A6-206ENST00000477085 KRTAP19-7Q3SYF9 63 aa5.38□□□□□ -1.55
COL4A6-206ENST00000477085 SYNE2Q8WXH0 6885 aaKnown RBP5.3□□□□□ -1.56
COL4A6-206ENST00000477085 MT1EP04732 61 aa5.26□□□□□ -1.57
COL4A6-206ENST00000477085 LCE3BQ5TA77 95 aa5.25□□□□□ -1.57
COL4A6-206ENST00000477085 MUC12Q9UKN1 5478 aa5.19□□□□□ -1.58
COL4A6-206ENST00000477085 SPRR5A0A1B0GTR4 108 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms