RNA–Protein interactions for RNA: ENST00000469535.5

CD46-212, Transcript of CD46 molecule, humanhuman

TSL 1 (best)

Gene CD46, Length 7,826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-212ENST00000469535 TRRAPQ9Y4A5 3859 aa3□□□□□ -1.93
CD46-212ENST00000469535 COL7A1Q02388 2944 aa3□□□□□ -1.93
CD46-212ENST00000469535 SPENQ96T58 3664 aaKnown RBP3□□□□□ -1.93
CD46-212ENST00000469535 KRTAP3-2Q9BYR7 98 aa3□□□□□ -1.93
CD46-212ENST00000469535 KRTAP10-5P60370 271 aa2.99□□□□□ -1.93
CD46-212ENST00000469535 SMG1Q96Q15 3661 aaKnown RBP2.98□□□□□ -1.93
CD46-212ENST00000469535 DYNC1H1Q14204 4646 aaKnown RBP2.96□□□□□ -1.94
CD46-212ENST00000469535 SVEP1Q4LDE5 3571 aa2.94□□□□□ -1.94
CD46-212ENST00000469535 KRTAP23-1A1A580 65 aa2.93□□□□□ -1.94
CD46-212ENST00000469535 INE1O15225 51 aa2.93□□□□□ -1.94
CD46-212ENST00000469535 DNAH9Q9NYC9 4486 aa2.92□□□□□ -1.94
CD46-212ENST00000469535 DNAH5Q8TE73 4624 aa2.91□□□□□ -1.94
CD46-212ENST00000469535 MT1HP80294 61 aa2.91□□□□□ -1.94
CD46-212ENST00000469535 PCLOQ9Y6V0 5065 aa2.91□□□□□ -1.94
CD46-212ENST00000469535 SPRR2FQ96RM1 72 aa2.91□□□□□ -1.94
CD46-212ENST00000469535 CUBNO60494 3623 aa2.9□□□□□ -1.95
CD46-212ENST00000469535 LRP1BQ9NZR2 4599 aa2.9□□□□□ -1.95
CD46-212ENST00000469535 KRTAP4-1Q9BYQ7 146 aa2.86□□□□□ -1.95
CD46-212ENST00000469535 RYR3Q15413 4870 aa2.85□□□□□ -1.95
CD46-212ENST00000469535 KRTAP10-7P60409 375 aaPredicted RBP2.84□□□□□ -1.95
CD46-212ENST00000469535 KIAA1109Q2LD37 5005 aa2.84□□□□□ -1.95
CD46-212ENST00000469535 DNAH2Q9P225 4427 aa2.84□□□□□ -1.95
CD46-212ENST00000469535 BSNQ9UPA5 3926 aa2.84□□□□□ -1.96
CD46-212ENST00000469535 DYNC2H1Q8NCM8 4307 aaKnown RBP2.83□□□□□ -1.96
CD46-212ENST00000469535 HERC2O95714 4834 aa2.83□□□□□ -1.96
CD46-212ENST00000469535 DNAH1Q9P2D7 4330 aa2.83□□□□□ -1.96
CD46-212ENST00000469535 MT2AP02795 61 aa2.82□□□□□ -1.96
CD46-212ENST00000469535 VPS13DQ5THJ4 4388 aa2.82□□□□□ -1.96
CD46-212ENST00000469535 VPS13CQ709C8 3753 aa2.82□□□□□ -1.96
CD46-212ENST00000469535 DNAH17Q9UFH2 4485 aa2.81□□□□□ -1.96
CD46-212ENST00000469535 CSMD3Q7Z407 3707 aa2.8□□□□□ -1.96
CD46-212ENST00000469535 SPRR2EP22531 72 aa2.78□□□□□ -1.96
CD46-212ENST00000469535 SPRR2BP35325 72 aa2.78□□□□□ -1.96
CD46-212ENST00000469535 SPRR2AP35326 72 aa2.78□□□□□ -1.96
CD46-212ENST00000469535 KMT2CQ8NEZ4 4911 aaKnown RBP2.78□□□□□ -1.97
CD46-212ENST00000469535 SACSQ9NZJ4 4579 aa2.77□□□□□ -1.97
CD46-212ENST00000469535 MT1FP04733 61 aa2.77□□□□□ -1.97
CD46-212ENST00000469535 ANK2Q01484 3957 aa2.76□□□□□ -1.97
CD46-212ENST00000469535 AKAP9Q99996 3911 aa2.74□□□□□ -1.97
CD46-212ENST00000469535 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
CD46-212ENST00000469535 MYCBP2O75592 4640 aa2.73□□□□□ -1.97
CD46-212ENST00000469535 HSPG2P98160 4391 aa2.72□□□□□ -1.97
CD46-212ENST00000469535 ABCA13Q86UQ4 5058 aa2.71□□□□□ -1.98
CD46-212ENST00000469535 HYDINQ4G0P3 5121 aa2.71□□□□□ -1.98
CD46-212ENST00000469535 DNAH8Q96JB1 4490 aa2.71□□□□□ -1.98
CD46-212ENST00000469535 SPRR2GQ9BYE4 73 aa2.7□□□□□ -1.98
CD46-212ENST00000469535 STARD9Q9P2P6 4700 aa2.69□□□□□ -1.98
CD46-212ENST00000469535 SPRR2DP22532 72 aa2.69□□□□□ -1.98
CD46-212ENST00000469535 DNAH6Q9C0G6 4158 aa2.68□□□□□ -1.98
CD46-212ENST00000469535 FAT2Q9NYQ8 4349 aa2.67□□□□□ -1.98
CD46-212ENST00000469535 APOBP04114 4563 aaKnown RBP2.67□□□□□ -1.98
CD46-212ENST00000469535 KRTAP19-4Q3LI73 84 aa2.67□□□□□ -1.98
CD46-212ENST00000469535 FAT1Q14517 4588 aa2.65□□□□□ -1.98
CD46-212ENST00000469535 ZNF469Q96JG9 3925 aaPredicted RBP2.64□□□□□ -1.99
CD46-212ENST00000469535 LCE3CQ5T5A8 94 aa2.63□□□□□ -1.99
CD46-212ENST00000469535 KRTAP17-1Q9BYP8 105 aa2.62□□□□□ -1.99
CD46-212ENST00000469535 LCE2BO14633 110 aa2.62□□□□□ -1.99
CD46-212ENST00000469535 DNAH3Q8TD57 4116 aa2.62□□□□□ -1.99
CD46-212ENST00000469535 EPPK1P58107 5090 aaKnown RBP2.6□□□□□ -1.99
CD46-212ENST00000469535 LCE3BQ5TA77 95 aa2.6□□□□□ -1.99
CD46-212ENST00000469535 VPS13BQ7Z7G8 4022 aa2.56□□□□□ -2
CD46-212ENST00000469535 MT1GP13640 62 aa2.55□□□□□ -2
CD46-212ENST00000469535 KRTAP12-4P60329 112 aa2.55□□□□□ -2
CD46-212ENST00000469535 RNF213Q63HN8 5207 aa2.53□□□□□ -2
CD46-212ENST00000469535 HMCN2Q8NDA2 5059 aa2.53□□□□□ -2
CD46-212ENST00000469535 KRTAP19-1Q8IUB9 90 aa2.53□□□□□ -2
CD46-212ENST00000469535 FAT3Q8TDW7 4589 aa2.53□□□□□ -2.01
CD46-212ENST00000469535 PRKDCP78527 4128 aaKnown RBP2.52□□□□□ -2.01
CD46-212ENST00000469535 KMT2AQ03164 3969 aa2.51□□□□□ -2.01
CD46-212ENST00000469535 DNAH7Q8WXX0 4024 aa2.51□□□□□ -2.01
CD46-212ENST00000469535 KRTAP19-8Q3LI54 63 aa2.48□□□□□ -2.01
CD46-212ENST00000469535 MT3P25713 68 aa2.48□□□□□ -2.01
CD46-212ENST00000469535 LCE2CQ5TA81 110 aa2.48□□□□□ -2.01
CD46-212ENST00000469535 KRTAP4-8A0A0G2JLE6 195 aa2.48□□□□□ -2.01
CD46-212ENST00000469535 KRTAP4-8Q9BYQ9 185 aa2.48□□□□□ -2.01
CD46-212ENST00000469535 MT1XP80297 61 aa2.47□□□□□ -2.01
CD46-212ENST00000469535 LCE2DQ5TA82 110 aaPredicted RBP2.46□□□□□ -2.02
CD46-212ENST00000469535 MT1BP07438 61 aa2.43□□□□□ -2.02
CD46-212ENST00000469535 LYSTQ99698 3801 aa2.43□□□□□ -2.02
CD46-212ENST00000469535 KRTAP9-8Q9BYQ0 159 aa2.43□□□□□ -2.02
CD46-212ENST00000469535 FRAS1Q86XX4 4008 aa2.42□□□□□ -2.02
CD46-212ENST00000469535 MT4P47944 62 aa2.42□□□□□ -2.02
CD46-212ENST00000469535 MUC17Q685J3 4493 aa2.41□□□□□ -2.02
CD46-212ENST00000469535 PKHD1L1Q86WI1 4243 aa2.41□□□□□ -2.02
CD46-212ENST00000469535 LRP1Q07954 4544 aaKnown RBP2.41□□□□□ -2.02
CD46-212ENST00000469535 CMYA5Q8N3K9 4069 aa2.4□□□□□ -2.02
CD46-212ENST00000469535 KRTAP9-2Q9BYQ4 174 aa2.4□□□□□ -2.03
CD46-212ENST00000469535 SPRR5A0A1B0GTR4 108 aa2.39□□□□□ -2.03
CD46-212ENST00000469535 KRTAP9-3Q9BYQ3 159 aa2.39□□□□□ -2.03
CD46-212ENST00000469535 PKHD1P08F94 4074 aa2.38□□□□□ -2.03
CD46-212ENST00000469535 KRTAP19-2Q3LHN2 52 aa2.36□□□□□ -2.03
CD46-212ENST00000469535 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
CD46-212ENST00000469535 UBR4Q5T4S7 5183 aa2.35□□□□□ -2.03
CD46-212ENST00000469535 PKD1P98161 4303 aa2.35□□□□□ -2.03
CD46-212ENST00000469535 KRTAP19-3Q7Z4W3 81 aa2.34□□□□□ -2.04
CD46-212ENST00000469535 LRP2P98164 4655 aa2.33□□□□□ -2.04
CD46-212ENST00000469535 LCE2AQ5TA79 106 aaPredicted RBP2.32□□□□□ -2.04
CD46-212ENST00000469535 FAT4Q6V0I7 4981 aa2.32□□□□□ -2.04
CD46-212ENST00000469535 KRTAP9-6A0A140TA67 174 aa2.31□□□□□ -2.04
CD46-212ENST00000469535 KRTAP4-7Q9BYR0 210 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms