RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 DMAC1Q96GE9 116 aa9.29□□□□□ -0.92
COL9A3-204ENST00000463487 C20orf197Q8N268 126 aa9.27□□□□□ -0.93
COL9A3-204ENST00000463487 KRTAP3-3Q9BYR6 98 aa9.27□□□□□ -0.93
COL9A3-204ENST00000463487 SNURFQ9Y675 71 aa9.26□□□□□ -0.93
COL9A3-204ENST00000463487 KRTAP9-3Q9BYQ3 159 aa9.23□□□□□ -0.93
COL9A3-204ENST00000463487 ACYP2P14621 99 aa9.19□□□□□ -0.94
COL9A3-204ENST00000463487 COX7CP15954 63 aa9.17□□□□□ -0.94
COL9A3-204ENST00000463487 KRTAP9-6A0A140TA67 174 aa9.16□□□□□ -0.94
COL9A3-204ENST00000463487 CRCT1Q9UGL9 99 aa9.16□□□□□ -0.94
COL9A3-204ENST00000463487 SPANXA2-OT1Q8N9U9 137 aa9.14□□□□□ -0.95
COL9A3-204ENST00000463487 FSIP2Q5CZC0 6907 aa9.13□□□□□ -0.95
COL9A3-204ENST00000463487 H0YAA0 97 aa9.12□□□□□ -0.95
COL9A3-204ENST00000463487 LCE2BO14633 110 aa9.09□□□□□ -0.95
COL9A3-204ENST00000463487 SPTSSBQ8NFR3 76 aa9.08□□□□□ -0.96
COL9A3-204ENST00000463487 ANAPC13Q9BS18 74 aa9.08□□□□□ -0.96
COL9A3-204ENST00000463487 CHKB-CPT1BH3BT56 60 aa9.07□□□□□ -0.96
COL9A3-204ENST00000463487 CRIPTQ9P021 101 aa9.04□□□□□ -0.96
COL9A3-204ENST00000463487 ADM2Q7Z4H4 148 aa9.01□□□□□ -0.97
COL9A3-204ENST00000463487 USH2AO75445 5202 aa8.96□□□□□ -0.97
COL9A3-204ENST00000463487 KRTAP19-1Q8IUB9 90 aa8.94□□□□□ -0.98
COL9A3-204ENST00000463487 SPRR2GQ9BYE4 73 aa8.94□□□□□ -0.98
COL9A3-204ENST00000463487 H7BZZ5 65 aa8.91□□□□□ -0.98
COL9A3-204ENST00000463487 Q5VV11 94 aa8.85□□□□□ -0.99
COL9A3-204ENST00000463487 CYSTM1Q9H1C7 97 aa8.85□□□□□ -0.99
COL9A3-204ENST00000463487 COA5Q86WW8 74 aa8.84□□□□□ -0.99
COL9A3-204ENST00000463487 R4GN34 69 aa8.81□□□□□ -1
COL9A3-204ENST00000463487 CCDC179H3BU77 68 aa8.8□□□□□ -1
COL9A3-204ENST00000463487 KRTAP19-8Q3LI54 63 aa8.8□□□□□ -1
COL9A3-204ENST00000463487 P0C880 135 aa8.79□□□□□ -1
COL9A3-204ENST00000463487 SSPOA2VEC9 5147 aa8.77□□□□□ -1.01
COL9A3-204ENST00000463487 KRTAP19-6Q3LI70 58 aa8.76□□□□□ -1.01
COL9A3-204ENST00000463487 KRTAP3-2Q9BYR7 98 aa8.75□□□□□ -1.01
COL9A3-204ENST00000463487 M0QZ58 72 aa8.72□□□□□ -1.01
COL9A3-204ENST00000463487 ATP5EP56381 51 aaPredicted RBP8.72□□□□□ -1.01
COL9A3-204ENST00000463487 MT1BP07438 61 aa8.71□□□□□ -1.02
COL9A3-204ENST00000463487 SEC61GP60059 68 aa8.66□□□□□ -1.02
COL9A3-204ENST00000463487 FCGBPQ9Y6R7 5405 aaPredicted RBP8.61□□□□□ -1.03
COL9A3-204ENST00000463487 SERP1Q9Y6X1 66 aa8.6□□□□□ -1.03
COL9A3-204ENST00000463487 TMEM258P61165 79 aa8.59□□□□□ -1.03
COL9A3-204ENST00000463487 A6NN06 94 aa8.58□□□□□ -1.04
COL9A3-204ENST00000463487 PLAC4Q8WY50 150 aa8.58□□□□□ -1.04
COL9A3-204ENST00000463487 LINC01554Q52M75 96 aa8.57□□□□□ -1.04
COL9A3-204ENST00000463487 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.48□□□□□ -1.05
COL9A3-204ENST00000463487 KRTAP10-5P60370 271 aa8.48□□□□□ -1.05
COL9A3-204ENST00000463487 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
COL9A3-204ENST00000463487 A0A1B0GU69 56 aa8.43□□□□□ -1.06
COL9A3-204ENST00000463487 A0A1B0GU33 70 aa8.38□□□□□ -1.07
COL9A3-204ENST00000463487 PRR15LQ9BU68 103 aa8.35□□□□□ -1.07
COL9A3-204ENST00000463487 KRTAP13-4Q3LI77 160 aa8.34□□□□□ -1.07
COL9A3-204ENST00000463487 MACF1Q9UPN3 7388 aaKnown RBP8.34□□□□□ -1.07
COL9A3-204ENST00000463487 KRTAP9-7A8MTY7 169 aa8.28□□□□□ -1.08
COL9A3-204ENST00000463487 MT1XP80297 61 aa8.27□□□□□ -1.09
COL9A3-204ENST00000463487 LINC01558Q9Y6Z2 57 aa8.25□□□□□ -1.09
COL9A3-204ENST00000463487 SPATA8Q6RVD6 105 aa8.24□□□□□ -1.09
COL9A3-204ENST00000463487 A0A0D9SG42 100 aa8.22□□□□□ -1.09
COL9A3-204ENST00000463487 PCP4P48539 62 aa8.2□□□□□ -1.1
COL9A3-204ENST00000463487 SMIM26A0A096LP01 95 aa8.19□□□□□ -1.1
COL9A3-204ENST00000463487 CAMK2N1Q7Z7J9 78 aa8.17□□□□□ -1.1
COL9A3-204ENST00000463487 SYNE2Q8WXH0 6885 aaKnown RBP8.17□□□□□ -1.1
COL9A3-204ENST00000463487 V9GYY9 64 aa8.11□□□□□ -1.11
COL9A3-204ENST00000463487 SPINT4Q6UDR6 99 aa8.1□□□□□ -1.11
COL9A3-204ENST00000463487 KRTAP6-3Q3LI67 103 aa8.09□□□□□ -1.11
COL9A3-204ENST00000463487 KRTAP12-2P59991 146 aa8.06□□□□□ -1.12
COL9A3-204ENST00000463487 UQCR11O14957 56 aa8.04□□□□□ -1.12
COL9A3-204ENST00000463487 KRTAP12-1P59990 96 aa8.02□□□□□ -1.13
COL9A3-204ENST00000463487 A8MU10 97 aa8□□□□□ -1.13
COL9A3-204ENST00000463487 Q1T7F1 81 aa7.98□□□□□ -1.13
COL9A3-204ENST00000463487 RPS28P62857 69 aaKnown RBP7.94□□□□□ -1.14
COL9A3-204ENST00000463487 PSPHP1O15172 72 aa7.91□□□□□ -1.14
COL9A3-204ENST00000463487 KRTAP10-7P60409 375 aaPredicted RBP7.89□□□□□ -1.15
COL9A3-204ENST00000463487 KRTAP10-12P60413 245 aa7.88□□□□□ -1.15
COL9A3-204ENST00000463487 MIR22HGQ0VDD5 57 aa7.87□□□□□ -1.15
COL9A3-204ENST00000463487 KRTAP8-1Q8IUC2 63 aa7.87□□□□□ -1.15
COL9A3-204ENST00000463487 KRTAP5-9P26371 169 aa7.86□□□□□ -1.15
COL9A3-204ENST00000463487 KMT2DO14686 5537 aa7.8□□□□□ -1.16
COL9A3-204ENST00000463487 K7ERS5 55 aa7.76□□□□□ -1.17
COL9A3-204ENST00000463487 KRTAP4-8A0A0G2JLE6 195 aa7.75□□□□□ -1.17
COL9A3-204ENST00000463487 SPRR2FQ96RM1 72 aa7.75□□□□□ -1.17
COL9A3-204ENST00000463487 KRTAP4-8Q9BYQ9 185 aa7.75□□□□□ -1.17
COL9A3-204ENST00000463487 A6NED7 52 aa7.72□□□□□ -1.17
COL9A3-204ENST00000463487 MUC12Q9UKN1 5478 aa7.66□□□□□ -1.18
COL9A3-204ENST00000463487 NEBP20929 6669 aa7.64□□□□□ -1.19
COL9A3-204ENST00000463487 TNP1P09430 55 aa7.64□□□□□ -1.19
COL9A3-204ENST00000463487 C10orf95Q9H7T3 257 aa7.6□□□□□ -1.19
COL9A3-204ENST00000463487 SPRR2EP22531 72 aa7.56□□□□□ -1.2
COL9A3-204ENST00000463487 SPRR2BP35325 72 aa7.56□□□□□ -1.2
COL9A3-204ENST00000463487 SPRR2AP35326 72 aa7.56□□□□□ -1.2
COL9A3-204ENST00000463487 MDN1Q9NU22 5596 aa7.53□□□□□ -1.2
COL9A3-204ENST00000463487 LCE1AQ5T7P2 110 aa7.45□□□□□ -1.22
COL9A3-204ENST00000463487 CDC42SE1Q9NRR8 79 aa7.43□□□□□ -1.22
COL9A3-204ENST00000463487 KRTAP25-1Q3LHN0 102 aa7.39□□□□□ -1.23
COL9A3-204ENST00000463487 KRTAP19-7Q3SYF9 63 aa7.37□□□□□ -1.23
COL9A3-204ENST00000463487 LCE3AQ5TA76 89 aa7.36□□□□□ -1.23
COL9A3-204ENST00000463487 KRTAP20-1Q3LI63 56 aa7.33□□□□□ -1.24
COL9A3-204ENST00000463487 MT1EP04732 61 aa7.32□□□□□ -1.24
COL9A3-204ENST00000463487 KRTAP19-5Q3LI72 72 aa7.32□□□□□ -1.24
COL9A3-204ENST00000463487 SPRR2DP22532 72 aa7.3□□□□□ -1.24
COL9A3-204ENST00000463487 KRTAP2-3P0C7H8 128 aa7.24□□□□□ -1.25
COL9A3-204ENST00000463487 KRTAP2-4Q9BYR9 128 aa7.24□□□□□ -1.25
COL9A3-204ENST00000463487 KRTAP19-3Q7Z4W3 81 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms