RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 SYNE2Q8WXH0 6885 aaKnown RBP4.68□□□□□ -1.66
SF3A3-204ENST00000462258 TRAV22A0A0B4J277 110 aa4.68□□□□□ -1.66
SF3A3-204ENST00000462258 FAM240AA0A1B0GVK7 77 aa4.68□□□□□ -1.66
SF3A3-204ENST00000462258 ATP5EP2Q5VTU8 51 aa4.68□□□□□ -1.66
SF3A3-204ENST00000462258 CSAG1Q6PB30 78 aa4.66□□□□□ -1.66
SF3A3-204ENST00000462258 KRTAP4-9Q9BYQ8 210 aa4.66□□□□□ -1.66
SF3A3-204ENST00000462258 LOC101927531A0A1B0GV80 90 aa4.65□□□□□ -1.67
SF3A3-204ENST00000462258 LCE4AQ5TA78 99 aa4.65□□□□□ -1.67
SF3A3-204ENST00000462258 CYP4F30PQ9H0H9 118 aa4.65□□□□□ -1.67
SF3A3-204ENST00000462258 HIST1H4AP62805 103 aaKnown RBP4.64□□□□□ -1.67
SF3A3-204ENST00000462258 H0Y9P7 68 aa4.6□□□□□ -1.67
SF3A3-204ENST00000462258 UQCRQO14949 82 aa4.6□□□□□ -1.67
SF3A3-204ENST00000462258 A0A087WVE0 104 aa4.59□□□□□ -1.67
SF3A3-204ENST00000462258 ATOX1O00244 68 aa4.59□□□□□ -1.67
SF3A3-204ENST00000462258 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
SF3A3-204ENST00000462258 KLKP1Q107X0 134 aa4.58□□□□□ -1.68
SF3A3-204ENST00000462258 SPRR2GQ9BYE4 73 aa4.58□□□□□ -1.68
SF3A3-204ENST00000462258 MT1BP07438 61 aa4.57□□□□□ -1.68
SF3A3-204ENST00000462258 Q5VV11 94 aa4.57□□□□□ -1.68
SF3A3-204ENST00000462258 LINC00643Q86TS7 51 aa4.57□□□□□ -1.68
SF3A3-204ENST00000462258 KRTAP19-8Q3LI54 63 aa4.55□□□□□ -1.68
SF3A3-204ENST00000462258 A0A1B0GV90 55 aa4.54□□□□□ -1.68
SF3A3-204ENST00000462258 A6NN06 94 aa4.53□□□□□ -1.68
SF3A3-204ENST00000462258 A8MUN3 132 aa4.51□□□□□ -1.69
SF3A3-204ENST00000462258 NDUFC1O43677 76 aa4.51□□□□□ -1.69
SF3A3-204ENST00000462258 LINC00208Q96KT6 92 aa4.51□□□□□ -1.69
SF3A3-204ENST00000462258 MP68P56378 58 aa4.5□□□□□ -1.69
SF3A3-204ENST00000462258 KRTAP6-3Q3LI67 103 aa4.5□□□□□ -1.69
SF3A3-204ENST00000462258 OCR1Q9BZK8 76 aa4.5□□□□□ -1.69
SF3A3-204ENST00000462258 IMUPQ9GZP8 106 aa4.5□□□□□ -1.69
SF3A3-204ENST00000462258 CRIPTQ9P021 101 aa4.5□□□□□ -1.69
SF3A3-204ENST00000462258 KRTAP4-11Q9BYQ6 195 aa4.49□□□□□ -1.69
SF3A3-204ENST00000462258 H0YAA0 97 aa4.48□□□□□ -1.69
SF3A3-204ENST00000462258 J3QR89 54 aa4.46□□□□□ -1.7
SF3A3-204ENST00000462258 KRTAP10-5P60370 271 aa4.46□□□□□ -1.7
SF3A3-204ENST00000462258 ADM2Q7Z4H4 148 aa4.43□□□□□ -1.7
SF3A3-204ENST00000462258 H3BPC8 53 aa4.42□□□□□ -1.7
SF3A3-204ENST00000462258 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
SF3A3-204ENST00000462258 PCP4P48539 62 aa4.41□□□□□ -1.7
SF3A3-204ENST00000462258 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
SF3A3-204ENST00000462258 SCGB1A1P11684 91 aa4.4□□□□□ -1.71
SF3A3-204ENST00000462258 NEBP20929 6669 aa4.4□□□□□ -1.71
SF3A3-204ENST00000462258 DMAC1Q96GE9 116 aa4.38□□□□□ -1.71
SF3A3-204ENST00000462258 LCE5AQ5TCM9 118 aa4.37□□□□□ -1.71
SF3A3-204ENST00000462258 C20orf197Q8N268 126 aa4.34□□□□□ -1.71
SF3A3-204ENST00000462258 R4GN34 69 aa4.33□□□□□ -1.72
SF3A3-204ENST00000462258 P0C880 135 aa4.32□□□□□ -1.72
SF3A3-204ENST00000462258 M0QZ58 72 aa4.3□□□□□ -1.72
SF3A3-204ENST00000462258 MT-ATP8P03928 68 aa4.3□□□□□ -1.72
SF3A3-204ENST00000462258 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
SF3A3-204ENST00000462258 PRO2289Q9P1D8 64 aa4.3□□□□□ -1.72
SF3A3-204ENST00000462258 KMT2DO14686 5537 aa4.29□□□□□ -1.72
SF3A3-204ENST00000462258 PLAC4Q8WY50 150 aa4.29□□□□□ -1.72
SF3A3-204ENST00000462258 TRAV7A0A075B6U4 112 aa4.28□□□□□ -1.72
SF3A3-204ENST00000462258 K7ERU9 68 aa4.28□□□□□ -1.72
SF3A3-204ENST00000462258 MT1XP80297 61 aa4.28□□□□□ -1.72
SF3A3-204ENST00000462258 SMIM20Q8N5G0 67 aa4.27□□□□□ -1.73
SF3A3-204ENST00000462258 MDN1Q9NU22 5596 aa4.27□□□□□ -1.73
SF3A3-204ENST00000462258 ACYP2P14621 99 aa4.25□□□□□ -1.73
SF3A3-204ENST00000462258 LINC01554Q52M75 96 aa4.23□□□□□ -1.73
SF3A3-204ENST00000462258 SPTSSBQ8NFR3 76 aa4.22□□□□□ -1.73
SF3A3-204ENST00000462258 CHKB-CPT1BH3BT56 60 aa4.2□□□□□ -1.74
SF3A3-204ENST00000462258 SNURFQ9Y675 71 aa4.2□□□□□ -1.74
SF3A3-204ENST00000462258 KRTAP20-1Q3LI63 56 aa4.19□□□□□ -1.74
SF3A3-204ENST00000462258 KRTAP12-2P59991 146 aa4.18□□□□□ -1.74
SF3A3-204ENST00000462258 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
SF3A3-204ENST00000462258 KRTAP8-1Q8IUC2 63 aa4.16□□□□□ -1.74
SF3A3-204ENST00000462258 SPANXA2-OT1Q8N9U9 137 aa4.14□□□□□ -1.75
SF3A3-204ENST00000462258 SPRR2EP22531 72 aa4.12□□□□□ -1.75
SF3A3-204ENST00000462258 SPRR2BP35325 72 aa4.12□□□□□ -1.75
SF3A3-204ENST00000462258 SPRR2AP35326 72 aa4.12□□□□□ -1.75
SF3A3-204ENST00000462258 SERP2Q8N6R1 65 aa4.12□□□□□ -1.75
SF3A3-204ENST00000462258 KRTAP5-3Q6L8H2 238 aa4.1□□□□□ -1.75
SF3A3-204ENST00000462258 KRTAP10-7P60409 375 aaPredicted RBP4.09□□□□□ -1.75
SF3A3-204ENST00000462258 KRTAP15-1Q3LI76 137 aa4.07□□□□□ -1.76
SF3A3-204ENST00000462258 KRTAP10-12P60413 245 aa4.06□□□□□ -1.76
SF3A3-204ENST00000462258 KRTAP2-3P0C7H8 128 aa4.05□□□□□ -1.76
SF3A3-204ENST00000462258 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
SF3A3-204ENST00000462258 KRTAP2-4Q9BYR9 128 aa4.05□□□□□ -1.76
SF3A3-204ENST00000462258 KRTAP13-4Q3LI77 160 aa4.04□□□□□ -1.76
SF3A3-204ENST00000462258 COA5Q86WW8 74 aa4.04□□□□□ -1.76
SF3A3-204ENST00000462258 COX7CP15954 63 aa3.99□□□□□ -1.77
SF3A3-204ENST00000462258 SPRR2DP22532 72 aa3.99□□□□□ -1.77
SF3A3-204ENST00000462258 CAMK2N1Q7Z7J9 78 aa3.98□□□□□ -1.77
SF3A3-204ENST00000462258 SEC61GP60059 68 aa3.96□□□□□ -1.78
SF3A3-204ENST00000462258 SERP1Q9Y6X1 66 aa3.95□□□□□ -1.78
SF3A3-204ENST00000462258 H7BZZ5 65 aa3.94□□□□□ -1.78
SF3A3-204ENST00000462258 CYSTM1Q9H1C7 97 aa3.94□□□□□ -1.78
SF3A3-204ENST00000462258 A0A0D9SG42 100 aa3.92□□□□□ -1.78
SF3A3-204ENST00000462258 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
SF3A3-204ENST00000462258 KRTAP2-1Q9BYU5 128 aa3.92□□□□□ -1.78
SF3A3-204ENST00000462258 SPATA8Q6RVD6 105 aa3.9□□□□□ -1.79
SF3A3-204ENST00000462258 A0A1B0GU33 70 aa3.89□□□□□ -1.79
SF3A3-204ENST00000462258 SPINT4Q6UDR6 99 aa3.86□□□□□ -1.79
SF3A3-204ENST00000462258 ANAPC13Q9BS18 74 aa3.84□□□□□ -1.79
SF3A3-204ENST00000462258 A0A1B0GU69 56 aa3.83□□□□□ -1.8
SF3A3-204ENST00000462258 KRTAP12-1P59990 96 aa3.83□□□□□ -1.8
SF3A3-204ENST00000462258 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
SF3A3-204ENST00000462258 MT1EP04732 61 aa3.8□□□□□ -1.8
SF3A3-204ENST00000462258 SMIM26A0A096LP01 95 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms