RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
HERC4-207ENST00000460168 RPS29P62273 56 aaKnown RBP5.87□□□□□ -1.47
HERC4-207ENST00000460168 PKHD1L1Q86WI1 4243 aa5.85□□□□□ -1.47
HERC4-207ENST00000460168 MMP24-AS1A0A0U1RRL7 71 aa5.84□□□□□ -1.47
HERC4-207ENST00000460168 FLG2Q5D862 2391 aaPredicted RBP5.83□□□□□ -1.48
HERC4-207ENST00000460168 LRP1Q07954 4544 aaKnown RBP5.83□□□□□ -1.48
HERC4-207ENST00000460168 TP53AIP1Q9HCN2 124 aa5.82□□□□□ -1.48
HERC4-207ENST00000460168 SPINT4Q6UDR6 99 aa5.82□□□□□ -1.48
HERC4-207ENST00000460168 ACYP2P14621 99 aa5.8□□□□□ -1.48
HERC4-207ENST00000460168 KRTAP10-8P60410 259 aa5.8□□□□□ -1.48
HERC4-207ENST00000460168 MYCBP2O75592 4640 aa5.78□□□□□ -1.48
HERC4-207ENST00000460168 MRPL34Q9BQ48 92 aaKnown RBP5.78□□□□□ -1.48
HERC4-207ENST00000460168 TNXBP22105 4242 aa5.77□□□□□ -1.49
HERC4-207ENST00000460168 KRTAP4-5Q9BYR2 181 aa5.76□□□□□ -1.49
HERC4-207ENST00000460168 FAT3Q8TDW7 4589 aa5.74□□□□□ -1.49
HERC4-207ENST00000460168 DMBT1Q9UGM3 2413 aaPredicted RBP5.73□□□□□ -1.49
HERC4-207ENST00000460168 MT1HL1P0DM35 61 aa5.73□□□□□ -1.49
HERC4-207ENST00000460168 C9orf92A6NGG3 77 aa5.69□□□□□ -1.5
HERC4-207ENST00000460168 LCE2CQ5TA81 110 aa5.69□□□□□ -1.5
HERC4-207ENST00000460168 LCE2AQ5TA79 106 aaPredicted RBP5.68□□□□□ -1.5
HERC4-207ENST00000460168 CAMK2N1Q7Z7J9 78 aa5.67□□□□□ -1.5
HERC4-207ENST00000460168 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
HERC4-207ENST00000460168 BIRC6Q9NR09 4857 aa5.65□□□□□ -1.51
HERC4-207ENST00000460168 LCE2BO14633 110 aa5.6□□□□□ -1.51
HERC4-207ENST00000460168 ABCA13Q86UQ4 5058 aa5.6□□□□□ -1.51
HERC4-207ENST00000460168 HERC2O95714 4834 aa5.6□□□□□ -1.51
HERC4-207ENST00000460168 KRTAP13-3Q3SY46 172 aa5.59□□□□□ -1.52
HERC4-207ENST00000460168 CRIPTQ9P021 101 aa5.58□□□□□ -1.52
HERC4-207ENST00000460168 H0YAA0 97 aa5.55□□□□□ -1.52
HERC4-207ENST00000460168 IGKV2D-30A0A075B6S6 120 aa5.53□□□□□ -1.52
HERC4-207ENST00000460168 IGKV2-30P06310 120 aa5.53□□□□□ -1.52
HERC4-207ENST00000460168 TPRXLQ17RH7 258 aa5.51□□□□□ -1.53
HERC4-207ENST00000460168 RPL37P61927 97 aaKnown RBP5.49□□□□□ -1.53
HERC4-207ENST00000460168 A0A1B0GU33 70 aa5.46□□□□□ -1.54
HERC4-207ENST00000460168 PCLOQ9Y6V0 5065 aa5.44□□□□□ -1.54
HERC4-207ENST00000460168 LPAP08519 4548 aa5.43□□□□□ -1.54
HERC4-207ENST00000460168 LRP2P98164 4655 aa5.39□□□□□ -1.55
HERC4-207ENST00000460168 LORP23490 312 aaPredicted RBP5.35□□□□□ -1.55
HERC4-207ENST00000460168 H1FX-AS1Q4G0G2 97 aa5.33□□□□□ -1.56
HERC4-207ENST00000460168 HERC1Q15751 4861 aa5.33□□□□□ -1.56
HERC4-207ENST00000460168 COX6B2Q6YFQ2 88 aa5.28□□□□□ -1.56
HERC4-207ENST00000460168 PRO2289Q9P1D8 64 aa5.28□□□□□ -1.56
HERC4-207ENST00000460168 C10orf95Q9H7T3 257 aa5.28□□□□□ -1.56
HERC4-207ENST00000460168 KRTAP3-1Q9BYR8 98 aa5.26□□□□□ -1.57
HERC4-207ENST00000460168 HMCN2Q8NDA2 5059 aa5.22□□□□□ -1.57
HERC4-207ENST00000460168 KRTAP4-1Q9BYQ7 146 aa5.19□□□□□ -1.58
HERC4-207ENST00000460168 PLAC4Q8WY50 150 aa5.17□□□□□ -1.58
HERC4-207ENST00000460168 MUC17Q685J3 4493 aa5.15□□□□□ -1.58
HERC4-207ENST00000460168 MUC2Q02817 5179 aa5.14□□□□□ -1.59
HERC4-207ENST00000460168 S4R3F8 94 aa5.13□□□□□ -1.59
HERC4-207ENST00000460168 LOC100996750A0A140TA64 210 aa5.12□□□□□ -1.59
HERC4-207ENST00000460168 KRTAP4-6Q9BYQ5 205 aa5.12□□□□□ -1.59
HERC4-207ENST00000460168 R4GN34 69 aa5.1□□□□□ -1.59
HERC4-207ENST00000460168 UBR4Q5T4S7 5183 aa5.04□□□□□ -1.6
HERC4-207ENST00000460168 KRTAP19-2Q3LHN2 52 aa5.02□□□□□ -1.61
HERC4-207ENST00000460168 RNF213Q63HN8 5207 aa4.97□□□□□ -1.61
HERC4-207ENST00000460168 INE1O15225 51 aa4.96□□□□□ -1.62
HERC4-207ENST00000460168 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
HERC4-207ENST00000460168 FLGP20930 4061 aaPredicted RBP4.91□□□□□ -1.62
HERC4-207ENST00000460168 KRTAP10-6P60371 365 aaPredicted RBP4.89□□□□□ -1.63
HERC4-207ENST00000460168 FAT4Q6V0I7 4981 aa4.89□□□□□ -1.63
HERC4-207ENST00000460168 M0R2T5 61 aa4.85□□□□□ -1.63
HERC4-207ENST00000460168 KRTAP13-4Q3LI77 160 aa4.85□□□□□ -1.63
HERC4-207ENST00000460168 A0A0D9SG42 100 aa4.84□□□□□ -1.63
HERC4-207ENST00000460168 MT1HP80294 61 aa4.83□□□□□ -1.64
HERC4-207ENST00000460168 KRTAP12-2P59991 146 aa4.82□□□□□ -1.64
HERC4-207ENST00000460168 M0QZ58 72 aa4.75□□□□□ -1.65
HERC4-207ENST00000460168 KRTAP12-1P59990 96 aa4.73□□□□□ -1.65
HERC4-207ENST00000460168 SPRR5A0A1B0GTR4 108 aa4.7□□□□□ -1.66
HERC4-207ENST00000460168 KRTAP5-3Q6L8H2 238 aa4.68□□□□□ -1.66
HERC4-207ENST00000460168 MT2AP02795 61 aa4.64□□□□□ -1.67
HERC4-207ENST00000460168 KRTAP10-10P60014 251 aa4.64□□□□□ -1.67
HERC4-207ENST00000460168 PP632Q6XCG6 107 aa4.64□□□□□ -1.67
HERC4-207ENST00000460168 MT1FP04733 61 aa4.62□□□□□ -1.67
HERC4-207ENST00000460168 SPRR2GQ9BYE4 73 aa4.56□□□□□ -1.68
HERC4-207ENST00000460168 KRTAP19-1Q8IUB9 90 aa4.54□□□□□ -1.68
HERC4-207ENST00000460168 KRTAP9-3Q9BYQ3 159 aa4.47□□□□□ -1.69
HERC4-207ENST00000460168 KRTAP19-8Q3LI54 63 aa4.41□□□□□ -1.7
HERC4-207ENST00000460168 MT1BP07438 61 aa4.37□□□□□ -1.71
HERC4-207ENST00000460168 KRTAP4-8Q9BYQ9 185 aa4.35□□□□□ -1.71
HERC4-207ENST00000460168 USH2AO75445 5202 aa4.26□□□□□ -1.73
HERC4-207ENST00000460168 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.23□□□□□ -1.73
HERC4-207ENST00000460168 MT1XP80297 61 aa4.23□□□□□ -1.73
HERC4-207ENST00000460168 TNP1P09430 55 aa4.23□□□□□ -1.73
HERC4-207ENST00000460168 KRTAP10-5P60370 271 aa4.23□□□□□ -1.73
HERC4-207ENST00000460168 KRTAP9-6A0A140TA67 174 aa4.21□□□□□ -1.74
HERC4-207ENST00000460168 KRTAP9-2Q9BYQ4 174 aa4.21□□□□□ -1.74
HERC4-207ENST00000460168 KRTAP19-4Q3LI73 84 aa4.19□□□□□ -1.74
HERC4-207ENST00000460168 KRTAP4-8A0A0G2JLE6 195 aa4.18□□□□□ -1.74
HERC4-207ENST00000460168 FSIP2Q5CZC0 6907 aa4.14□□□□□ -1.75
HERC4-207ENST00000460168 KRTAP4-7Q9BYR0 210 aa4.1□□□□□ -1.75
HERC4-207ENST00000460168 LCE5AQ5TCM9 118 aa4.1□□□□□ -1.75
HERC4-207ENST00000460168 KRTAP10-7P60409 375 aaPredicted RBP4.08□□□□□ -1.76
HERC4-207ENST00000460168 LCE3BQ5TA77 95 aa4.08□□□□□ -1.76
HERC4-207ENST00000460168 SSPOA2VEC9 5147 aa4.07□□□□□ -1.76
HERC4-207ENST00000460168 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
HERC4-207ENST00000460168 KRTAP10-12P60413 245 aa4.06□□□□□ -1.76
HERC4-207ENST00000460168 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
HERC4-207ENST00000460168 KRTAP9-4Q9BYQ2 154 aa4.03□□□□□ -1.76
HERC4-207ENST00000460168 KRTAP9-9Q9BYP9 154 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms