RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 A0A0D9SG42 100 aa10.63□□□□□ -0.71
SHOX2-203ENST00000441443 LRP1Q07954 4544 aaKnown RBP10.59□□□□□ -0.71
SHOX2-203ENST00000441443 RPL37P61927 97 aaKnown RBP10.58□□□□□ -0.72
SHOX2-203ENST00000441443 KRTAP13-4Q3LI77 160 aa10.58□□□□□ -0.72
SHOX2-203ENST00000441443 TPRXLQ17RH7 258 aa10.55□□□□□ -0.72
SHOX2-203ENST00000441443 KRTAP10-6P60371 365 aaPredicted RBP10.54□□□□□ -0.72
SHOX2-203ENST00000441443 SPINT4Q6UDR6 99 aa10.54□□□□□ -0.72
SHOX2-203ENST00000441443 C10orf95Q9H7T3 257 aa10.51□□□□□ -0.73
SHOX2-203ENST00000441443 KRTAP3-3Q9BYR6 98 aa10.46□□□□□ -0.73
SHOX2-203ENST00000441443 MYCBP2O75592 4640 aa10.45□□□□□ -0.74
SHOX2-203ENST00000441443 PKHD1L1Q86WI1 4243 aa10.45□□□□□ -0.74
SHOX2-203ENST00000441443 Q5VSD8 79 aa10.44□□□□□ -0.74
SHOX2-203ENST00000441443 KRTAP3-2Q9BYR7 98 aa10.41□□□□□ -0.74
SHOX2-203ENST00000441443 RYR3Q15413 4870 aa10.4□□□□□ -0.74
SHOX2-203ENST00000441443 KIAA1109Q2LD37 5005 aa10.35□□□□□ -0.75
SHOX2-203ENST00000441443 HSPG2P98160 4391 aa10.34□□□□□ -0.75
SHOX2-203ENST00000441443 NDUFAF8A1L188 74 aa10.3□□□□□ -0.76
SHOX2-203ENST00000441443 KRTAP10-8P60410 259 aa10.28□□□□□ -0.76
SHOX2-203ENST00000441443 S4R3F8 94 aa10.28□□□□□ -0.76
SHOX2-203ENST00000441443 KRTAP17-1Q9BYP8 105 aa10.27□□□□□ -0.77
SHOX2-203ENST00000441443 KRTAP12-2P59991 146 aa10.27□□□□□ -0.77
SHOX2-203ENST00000441443 KRTAP15-1Q3LI76 137 aa10.25□□□□□ -0.77
SHOX2-203ENST00000441443 FAT3Q8TDW7 4589 aa10.25□□□□□ -0.77
SHOX2-203ENST00000441443 TNXBP22105 4242 aa10.24□□□□□ -0.77
SHOX2-203ENST00000441443 RYR1P21817 5038 aa10.22□□□□□ -0.77
SHOX2-203ENST00000441443 KRTAP12-1P59990 96 aa10.11□□□□□ -0.79
SHOX2-203ENST00000441443 XP32Q5T750 250 aa10.09□□□□□ -0.79
SHOX2-203ENST00000441443 EPPK1P58107 5090 aaKnown RBP10.08□□□□□ -0.8
SHOX2-203ENST00000441443 MT1HL1P0DM35 61 aa10.01□□□□□ -0.81
SHOX2-203ENST00000441443 LRP2P98164 4655 aa9.96□□□□□ -0.82
SHOX2-203ENST00000441443 LPAP08519 4548 aa9.92□□□□□ -0.82
SHOX2-203ENST00000441443 KRTAP4-5Q9BYR2 181 aa9.88□□□□□ -0.83
SHOX2-203ENST00000441443 ABCA13Q86UQ4 5058 aa9.86□□□□□ -0.83
SHOX2-203ENST00000441443 M0QZ58 72 aa9.82□□□□□ -0.84
SHOX2-203ENST00000441443 A0A0A0MQY5 61 aa9.81□□□□□ -0.84
SHOX2-203ENST00000441443 R4GN34 69 aa9.61□□□□□ -0.87
SHOX2-203ENST00000441443 PLAC4Q8WY50 150 aa9.6□□□□□ -0.87
SHOX2-203ENST00000441443 J3QL48 77 aa9.59□□□□□ -0.87
SHOX2-203ENST00000441443 HERC2O95714 4834 aa9.55□□□□□ -0.88
SHOX2-203ENST00000441443 LORP23490 312 aaPredicted RBP9.48□□□□□ -0.89
SHOX2-203ENST00000441443 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
SHOX2-203ENST00000441443 MUC2Q02817 5179 aa9.39□□□□□ -0.91
SHOX2-203ENST00000441443 LUZP6Q538Z0 58 aa9.36□□□□□ -0.91
SHOX2-203ENST00000441443 KRTAP4-1Q9BYQ7 146 aa9.35□□□□□ -0.91
SHOX2-203ENST00000441443 MUC17Q685J3 4493 aa9.23□□□□□ -0.93
SHOX2-203ENST00000441443 CAMK2N1Q7Z7J9 78 aa9.21□□□□□ -0.94
SHOX2-203ENST00000441443 HERC1Q15751 4861 aa9.21□□□□□ -0.94
SHOX2-203ENST00000441443 PP632Q6XCG6 107 aa9.15□□□□□ -0.94
SHOX2-203ENST00000441443 BIRC6Q9NR09 4857 aa9.15□□□□□ -0.94
SHOX2-203ENST00000441443 PCLOQ9Y6V0 5065 aa9.1□□□□□ -0.95
SHOX2-203ENST00000441443 KRTAP19-2Q3LHN2 52 aa8.97□□□□□ -0.97
SHOX2-203ENST00000441443 FAT4Q6V0I7 4981 aa8.94□□□□□ -0.98
SHOX2-203ENST00000441443 HMCN2Q8NDA2 5059 aa8.87□□□□□ -0.99
SHOX2-203ENST00000441443 RNF213Q63HN8 5207 aa8.86□□□□□ -0.99
SHOX2-203ENST00000441443 TNP1P09430 55 aa8.85□□□□□ -0.99
SHOX2-203ENST00000441443 FLGP20930 4061 aaPredicted RBP8.84□□□□□ -0.99
SHOX2-203ENST00000441443 UBR4Q5T4S7 5183 aa8.75□□□□□ -1.01
SHOX2-203ENST00000441443 SPRR5A0A1B0GTR4 108 aa8.75□□□□□ -1.01
SHOX2-203ENST00000441443 M0R2T5 61 aa8.69□□□□□ -1.02
SHOX2-203ENST00000441443 KRTAP23-1A1A580 65 aa8.64□□□□□ -1.03
SHOX2-203ENST00000441443 LCE2CQ5TA81 110 aa8.57□□□□□ -1.04
SHOX2-203ENST00000441443 MT1HP80294 61 aa8.4□□□□□ -1.06
SHOX2-203ENST00000441443 LCE3AQ5TA76 89 aa8.39□□□□□ -1.07
SHOX2-203ENST00000441443 KRTAP10-10P60014 251 aa8.37□□□□□ -1.07
SHOX2-203ENST00000441443 KRTAP19-1Q8IUB9 90 aa8.3□□□□□ -1.08
SHOX2-203ENST00000441443 SPRR2GQ9BYE4 73 aa8.27□□□□□ -1.09
SHOX2-203ENST00000441443 MT1FP04733 61 aa8.27□□□□□ -1.09
SHOX2-203ENST00000441443 PRO2289Q9P1D8 64 aa8.24□□□□□ -1.09
SHOX2-203ENST00000441443 MT2AP02795 61 aa8.24□□□□□ -1.09
SHOX2-203ENST00000441443 KRTAP9-8Q9BYQ0 159 aa8.15□□□□□ -1.11
SHOX2-203ENST00000441443 KRTAP8-1Q8IUC2 63 aa8.06□□□□□ -1.12
SHOX2-203ENST00000441443 INE1O15225 51 aa8.05□□□□□ -1.12
SHOX2-203ENST00000441443 KRTAP12-3P60328 96 aa7.93□□□□□ -1.14
SHOX2-203ENST00000441443 MT1BP07438 61 aa7.89□□□□□ -1.15
SHOX2-203ENST00000441443 KRTAP10-5P60370 271 aa7.87□□□□□ -1.15
SHOX2-203ENST00000441443 KRTAP19-8Q3LI54 63 aa7.86□□□□□ -1.15
SHOX2-203ENST00000441443 USH2AO75445 5202 aa7.85□□□□□ -1.15
SHOX2-203ENST00000441443 KRTAP10-12P60413 245 aa7.84□□□□□ -1.15
SHOX2-203ENST00000441443 MT1XP80297 61 aa7.84□□□□□ -1.15
SHOX2-203ENST00000441443 KRTAP9-3Q9BYQ3 159 aa7.8□□□□□ -1.16
SHOX2-203ENST00000441443 KRTAP10-7P60409 375 aaPredicted RBP7.74□□□□□ -1.17
SHOX2-203ENST00000441443 LCE2BO14633 110 aa7.6□□□□□ -1.19
SHOX2-203ENST00000441443 KMT2DO14686 5537 aa7.59□□□□□ -1.19
SHOX2-203ENST00000441443 KRTAP19-5Q3LI72 72 aa7.47□□□□□ -1.21
SHOX2-203ENST00000441443 LCE3CQ5T5A8 94 aa7.47□□□□□ -1.21
SHOX2-203ENST00000441443 FSIP2Q5CZC0 6907 aa7.46□□□□□ -1.22
SHOX2-203ENST00000441443 LCE2AQ5TA79 106 aaPredicted RBP7.46□□□□□ -1.22
SHOX2-203ENST00000441443 KRTAP9-6A8MVA2 160 aa7.34□□□□□ -1.23
SHOX2-203ENST00000441443 KRTAP4-8A0A0G2JLE6 195 aa7.32□□□□□ -1.24
SHOX2-203ENST00000441443 KRTAP4-8Q9BYQ9 185 aa7.32□□□□□ -1.24
SHOX2-203ENST00000441443 KRTAP4-7Q9BYR0 210 aa7.17□□□□□ -1.26
SHOX2-203ENST00000441443 KRTAP2-3P0C7H8 128 aa7.12□□□□□ -1.27
SHOX2-203ENST00000441443 KRTAP2-4Q9BYR9 128 aa7.12□□□□□ -1.27
SHOX2-203ENST00000441443 KRTAP2-1Q9BYU5 128 aa7.12□□□□□ -1.27
SHOX2-203ENST00000441443 SSPOA2VEC9 5147 aa7.12□□□□□ -1.27
SHOX2-203ENST00000441443 KRTAP19-7Q3SYF9 63 aa6.98□□□□□ -1.29
SHOX2-203ENST00000441443 MT1LQ93083 61 aa6.8□□□□□ -1.32
SHOX2-203ENST00000441443 MUC12Q9UKN1 5478 aa6.77□□□□□ -1.33
SHOX2-203ENST00000441443 FCGBPQ9Y6R7 5405 aaPredicted RBP6.77□□□□□ -1.33
SHOX2-203ENST00000441443 MT1EP04732 61 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms