RNA–Protein interactions for RNA: ENST00000439958.7

CPSF7-205, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF7, Length 3,524 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-205ENST00000439958 SPTSSBQ8NFR3 76 aa7.68□□□□□ -1.18
CPSF7-205ENST00000439958 Q5VV11 94 aa7.68□□□□□ -1.18
CPSF7-205ENST00000439958 SEC61GP60059 68 aa7.67□□□□□ -1.18
CPSF7-205ENST00000439958 LINC01558Q9Y6Z2 57 aa7.66□□□□□ -1.18
CPSF7-205ENST00000439958 S4R3F8 94 aa7.63□□□□□ -1.19
CPSF7-205ENST00000439958 LCA10Q71F78 164 aa7.62□□□□□ -1.19
CPSF7-205ENST00000439958 A8MU10 97 aa7.57□□□□□ -1.2
CPSF7-205ENST00000439958 H1FX-AS1Q4G0G2 97 aa7.57□□□□□ -1.2
CPSF7-205ENST00000439958 KRTAP4-1Q9BYQ7 146 aa7.57□□□□□ -1.2
CPSF7-205ENST00000439958 HMCN2Q8NDA2 5059 aa7.53□□□□□ -1.2
CPSF7-205ENST00000439958 RNF213Q63HN8 5207 aa7.49□□□□□ -1.21
CPSF7-205ENST00000439958 CSAG1Q6PB30 78 aa7.45□□□□□ -1.22
CPSF7-205ENST00000439958 KRTAP3-3Q9BYR6 98 aa7.45□□□□□ -1.22
CPSF7-205ENST00000439958 UBR4Q5T4S7 5183 aa7.45□□□□□ -1.22
CPSF7-205ENST00000439958 UQCR11O14957 56 aa7.44□□□□□ -1.22
CPSF7-205ENST00000439958 PRO0628Q9UI54 55 aa7.42□□□□□ -1.22
CPSF7-205ENST00000439958 MIR22HGQ0VDD5 57 aa7.41□□□□□ -1.22
CPSF7-205ENST00000439958 A0A1B0GU33 70 aa7.4□□□□□ -1.22
CPSF7-205ENST00000439958 SPATA8Q6RVD6 105 aa7.4□□□□□ -1.23
CPSF7-205ENST00000439958 ADM2Q7Z4H4 148 aa7.39□□□□□ -1.23
CPSF7-205ENST00000439958 CDC42SE1Q9NRR8 79 aa7.36□□□□□ -1.23
CPSF7-205ENST00000439958 MUC17Q685J3 4493 aa7.36□□□□□ -1.23
CPSF7-205ENST00000439958 FAT4Q6V0I7 4981 aa7.35□□□□□ -1.23
CPSF7-205ENST00000439958 A0A0D9SG42 100 aa7.34□□□□□ -1.23
CPSF7-205ENST00000439958 P0C880 135 aa7.34□□□□□ -1.23
CPSF7-205ENST00000439958 PMAIP1Q13794 54 aa7.31□□□□□ -1.24
CPSF7-205ENST00000439958 M0R2T5 61 aa7.3□□□□□ -1.24
CPSF7-205ENST00000439958 LINC01554Q52M75 96 aa7.27□□□□□ -1.25
CPSF7-205ENST00000439958 H0YAA0 97 aa7.26□□□□□ -1.25
CPSF7-205ENST00000439958 KRTAP10-6P60371 365 aaPredicted RBP7.24□□□□□ -1.25
CPSF7-205ENST00000439958 KRTAP3-2Q9BYR7 98 aa7.21□□□□□ -1.25
CPSF7-205ENST00000439958 KRTAP13-4Q3LI77 160 aa7.17□□□□□ -1.26
CPSF7-205ENST00000439958 M0QZ58 72 aa7.15□□□□□ -1.26
CPSF7-205ENST00000439958 R4GN34 69 aa7.15□□□□□ -1.26
CPSF7-205ENST00000439958 KRTAP19-2Q3LHN2 52 aa7.14□□□□□ -1.27
CPSF7-205ENST00000439958 SPINT4Q6UDR6 99 aa7.13□□□□□ -1.27
CPSF7-205ENST00000439958 K7ERS5 55 aa7.1□□□□□ -1.27
CPSF7-205ENST00000439958 FLGP20930 4061 aaPredicted RBP7.07□□□□□ -1.28
CPSF7-205ENST00000439958 LORP23490 312 aaPredicted RBP7.06□□□□□ -1.28
CPSF7-205ENST00000439958 LCE2CQ5TA81 110 aa7.02□□□□□ -1.28
CPSF7-205ENST00000439958 A6NN06 94 aa7□□□□□ -1.29
CPSF7-205ENST00000439958 MT1HP80294 61 aa6.97□□□□□ -1.29
CPSF7-205ENST00000439958 KRTAP12-2P59991 146 aa6.92□□□□□ -1.3
CPSF7-205ENST00000439958 PRAC1Q96KF2 57 aa6.9□□□□□ -1.3
CPSF7-205ENST00000439958 SVIPQ8NHG7 77 aa6.9□□□□□ -1.31
CPSF7-205ENST00000439958 KRTAP10-10P60014 251 aa6.89□□□□□ -1.31
CPSF7-205ENST00000439958 CRIPTQ9P021 101 aa6.89□□□□□ -1.31
CPSF7-205ENST00000439958 KTN1-AS1Q86SY8 53 aa6.87□□□□□ -1.31
CPSF7-205ENST00000439958 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
CPSF7-205ENST00000439958 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
CPSF7-205ENST00000439958 MT2AP02795 61 aa6.73□□□□□ -1.33
CPSF7-205ENST00000439958 MT1FP04733 61 aa6.73□□□□□ -1.33
CPSF7-205ENST00000439958 ROMO1P60602 79 aa6.73□□□□□ -1.33
CPSF7-205ENST00000439958 KRTAP9-8Q9BYQ0 159 aa6.67□□□□□ -1.34
CPSF7-205ENST00000439958 PLAC4Q8WY50 150 aa6.63□□□□□ -1.35
CPSF7-205ENST00000439958 C10orf95Q9H7T3 257 aa6.61□□□□□ -1.35
CPSF7-205ENST00000439958 KRTAP19-1Q8IUB9 90 aa6.59□□□□□ -1.36
CPSF7-205ENST00000439958 SPRR2GQ9BYE4 73 aa6.54□□□□□ -1.36
CPSF7-205ENST00000439958 FSIP2Q5CZC0 6907 aa6.5□□□□□ -1.37
CPSF7-205ENST00000439958 KRTAP25-1Q3LHN0 102 aa6.48□□□□□ -1.37
CPSF7-205ENST00000439958 USH2AO75445 5202 aa6.47□□□□□ -1.37
CPSF7-205ENST00000439958 LCE2AQ5TA79 106 aaPredicted RBP6.46□□□□□ -1.37
CPSF7-205ENST00000439958 KRTAP9-3Q9BYQ3 159 aa6.4□□□□□ -1.38
CPSF7-205ENST00000439958 TNP1P09430 55 aa6.33□□□□□ -1.4
CPSF7-205ENST00000439958 MT1BP07438 61 aa6.32□□□□□ -1.4
CPSF7-205ENST00000439958 LCE2BO14633 110 aa6.3□□□□□ -1.4
CPSF7-205ENST00000439958 KRTAP19-8Q3LI54 63 aa6.29□□□□□ -1.4
CPSF7-205ENST00000439958 MT1XP80297 61 aa6.16□□□□□ -1.42
CPSF7-205ENST00000439958 PRO2289Q9P1D8 64 aa6.15□□□□□ -1.42
CPSF7-205ENST00000439958 KRTAP10-5P60370 271 aa6.15□□□□□ -1.43
CPSF7-205ENST00000439958 KMT2DO14686 5537 aa6.05□□□□□ -1.44
CPSF7-205ENST00000439958 LCE3AQ5TA76 89 aa6.04□□□□□ -1.44
CPSF7-205ENST00000439958 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
CPSF7-205ENST00000439958 KRTAP10-7P60409 375 aaPredicted RBP6.04□□□□□ -1.44
CPSF7-205ENST00000439958 SSPOA2VEC9 5147 aa6□□□□□ -1.45
CPSF7-205ENST00000439958 KRTAP10-12P60413 245 aa6□□□□□ -1.45
CPSF7-205ENST00000439958 KRTAP4-8A0A0G2JLE6 195 aa5.86□□□□□ -1.47
CPSF7-205ENST00000439958 KRTAP4-8Q9BYQ9 185 aa5.86□□□□□ -1.47
CPSF7-205ENST00000439958 KRTAP23-1A1A580 65 aa5.78□□□□□ -1.48
CPSF7-205ENST00000439958 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
CPSF7-205ENST00000439958 FCGBPQ9Y6R7 5405 aaPredicted RBP5.74□□□□□ -1.49
CPSF7-205ENST00000439958 KRTAP19-6Q3LI70 58 aa5.72□□□□□ -1.49
CPSF7-205ENST00000439958 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
CPSF7-205ENST00000439958 KRTAP8-1Q8IUC2 63 aa5.71□□□□□ -1.49
CPSF7-205ENST00000439958 KRTAP9-2Q9BYQ4 174 aa5.71□□□□□ -1.5
CPSF7-205ENST00000439958 KRTAP19-5Q3LI72 72 aa5.7□□□□□ -1.5
CPSF7-205ENST00000439958 KRTAP15-1Q3LI76 137 aa5.68□□□□□ -1.5
CPSF7-205ENST00000439958 NDUFAF8A1L188 74 aa5.6□□□□□ -1.51
CPSF7-205ENST00000439958 MACF1Q9UPN3 7388 aaKnown RBP5.6□□□□□ -1.51
CPSF7-205ENST00000439958 LUZP6Q538Z0 58 aa5.58□□□□□ -1.52
CPSF7-205ENST00000439958 MUC12Q9UKN1 5478 aa5.54□□□□□ -1.52
CPSF7-205ENST00000439958 SYNE2Q8WXH0 6885 aaKnown RBP5.52□□□□□ -1.53
CPSF7-205ENST00000439958 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
CPSF7-205ENST00000439958 KRTAP19-7Q3SYF9 63 aa5.48□□□□□ -1.53
CPSF7-205ENST00000439958 SPRR2FQ96RM1 72 aa5.41□□□□□ -1.54
CPSF7-205ENST00000439958 KRTAP4-7Q9BYR0 210 aa5.4□□□□□ -1.55
CPSF7-205ENST00000439958 DSTQ03001 7570 aaKnown RBP5.39□□□□□ -1.55
CPSF7-205ENST00000439958 MT1EP04732 61 aa5.37□□□□□ -1.55
CPSF7-205ENST00000439958 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
CPSF7-205ENST00000439958 MT1LQ93083 61 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms