RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 KRTAP10-10P60014 251 aa11.58□□□□□ -0.55
VEGFA-209ENST00000425836 CSAG1Q6PB30 78 aa11.57□□□□□ -0.56
VEGFA-209ENST00000425836 KRTAP3-3Q9BYR6 98 aa11.56□□□□□ -0.56
VEGFA-209ENST00000425836 C20orf197Q8N268 126 aa11.52□□□□□ -0.57
VEGFA-209ENST00000425836 SNURFQ9Y675 71 aa11.5□□□□□ -0.57
VEGFA-209ENST00000425836 CCDC179H3BU77 68 aa11.48□□□□□ -0.57
VEGFA-209ENST00000425836 DMAC1Q96GE9 116 aa11.46□□□□□ -0.57
VEGFA-209ENST00000425836 KRTAP9-3Q9BYQ3 159 aa11.46□□□□□ -0.57
VEGFA-209ENST00000425836 NDUFC1O43677 76 aa11.42□□□□□ -0.58
VEGFA-209ENST00000425836 CYSTM1Q9H1C7 97 aa11.37□□□□□ -0.59
VEGFA-209ENST00000425836 LCE2BO14633 110 aa11.28□□□□□ -0.6
VEGFA-209ENST00000425836 ACYP2P14621 99 aa11.28□□□□□ -0.6
VEGFA-209ENST00000425836 FSIP2Q5CZC0 6907 aa11.27□□□□□ -0.6
VEGFA-209ENST00000425836 H7BZZ5 65 aa11.27□□□□□ -0.61
VEGFA-209ENST00000425836 SPANXA2-OT1Q8N9U9 137 aa11.26□□□□□ -0.61
VEGFA-209ENST00000425836 CRCT1Q9UGL9 99 aa11.22□□□□□ -0.61
VEGFA-209ENST00000425836 USH2AO75445 5202 aa11.21□□□□□ -0.61
VEGFA-209ENST00000425836 KRTAP9-6A0A140TA67 174 aa11.2□□□□□ -0.62
VEGFA-209ENST00000425836 H0YAA0 97 aa11.19□□□□□ -0.62
VEGFA-209ENST00000425836 KRTAP19-1Q8IUB9 90 aa11.11□□□□□ -0.63
VEGFA-209ENST00000425836 ADM2Q7Z4H4 148 aa11.09□□□□□ -0.63
VEGFA-209ENST00000425836 CHKB-CPT1BH3BT56 60 aa11.07□□□□□ -0.64
VEGFA-209ENST00000425836 TMEM258P61165 79 aa11.07□□□□□ -0.64
VEGFA-209ENST00000425836 SPTSSBQ8NFR3 76 aa11.03□□□□□ -0.64
VEGFA-209ENST00000425836 SPRR2GQ9BYE4 73 aa11.03□□□□□ -0.64
VEGFA-209ENST00000425836 CRIPTQ9P021 101 aa11.02□□□□□ -0.65
VEGFA-209ENST00000425836 SSPOA2VEC9 5147 aa11.01□□□□□ -0.65
VEGFA-209ENST00000425836 ATP5EP56381 51 aaPredicted RBP10.99□□□□□ -0.65
VEGFA-209ENST00000425836 COA5Q86WW8 74 aa10.93□□□□□ -0.66
VEGFA-209ENST00000425836 KRTAP3-2Q9BYR7 98 aa10.93□□□□□ -0.66
VEGFA-209ENST00000425836 P0C880 135 aa10.92□□□□□ -0.66
VEGFA-209ENST00000425836 KRTAP19-8Q3LI54 63 aa10.88□□□□□ -0.67
VEGFA-209ENST00000425836 MT1BP07438 61 aa10.82□□□□□ -0.68
VEGFA-209ENST00000425836 Q5VV11 94 aa10.82□□□□□ -0.68
VEGFA-209ENST00000425836 KRTAP19-6Q3LI70 58 aa10.8□□□□□ -0.68
VEGFA-209ENST00000425836 R4GN34 69 aa10.75□□□□□ -0.69
VEGFA-209ENST00000425836 SERP1Q9Y6X1 66 aa10.73□□□□□ -0.69
VEGFA-209ENST00000425836 M0QZ58 72 aa10.7□□□□□ -0.7
VEGFA-209ENST00000425836 FCGBPQ9Y6R7 5405 aaPredicted RBP10.69□□□□□ -0.7
VEGFA-209ENST00000425836 RPS28P62857 69 aaKnown RBP10.6□□□□□ -0.71
VEGFA-209ENST00000425836 LINC01554Q52M75 96 aa10.52□□□□□ -0.73
VEGFA-209ENST00000425836 SEC61GP60059 68 aa10.51□□□□□ -0.73
VEGFA-209ENST00000425836 A6NN06 94 aa10.48□□□□□ -0.73
VEGFA-209ENST00000425836 KRTAP10-5P60370 271 aa10.45□□□□□ -0.74
VEGFA-209ENST00000425836 PLAC4Q8WY50 150 aa10.45□□□□□ -0.74
VEGFA-209ENST00000425836 KRTAP13-4Q3LI77 160 aa10.43□□□□□ -0.74
VEGFA-209ENST00000425836 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.42□□□□□ -0.74
VEGFA-209ENST00000425836 SMIM26A0A096LP01 95 aa10.39□□□□□ -0.75
VEGFA-209ENST00000425836 A0A1B0GU69 56 aa10.35□□□□□ -0.75
VEGFA-209ENST00000425836 A0A1B0GU33 70 aa10.31□□□□□ -0.76
VEGFA-209ENST00000425836 LINC01558Q9Y6Z2 57 aa10.31□□□□□ -0.76
VEGFA-209ENST00000425836 Q1T7F1 81 aa10.28□□□□□ -0.76
VEGFA-209ENST00000425836 MT1XP80297 61 aa10.27□□□□□ -0.76
VEGFA-209ENST00000425836 MACF1Q9UPN3 7388 aaKnown RBP10.25□□□□□ -0.77
VEGFA-209ENST00000425836 V9GYY9 64 aa10.25□□□□□ -0.77
VEGFA-209ENST00000425836 PRO2289Q9P1D8 64 aa10.23□□□□□ -0.77
VEGFA-209ENST00000425836 SPATA8Q6RVD6 105 aa10.22□□□□□ -0.77
VEGFA-209ENST00000425836 PRR15LQ9BU68 103 aa10.17□□□□□ -0.78
VEGFA-209ENST00000425836 A0A0D9SG42 100 aa10.14□□□□□ -0.79
VEGFA-209ENST00000425836 KRTAP9-7A8MTY7 169 aa10.13□□□□□ -0.79
VEGFA-209ENST00000425836 PSPHP1O15172 72 aa10.08□□□□□ -0.8
VEGFA-209ENST00000425836 PRO0628Q9UI54 55 aa10.07□□□□□ -0.8
VEGFA-209ENST00000425836 SYNE2Q8WXH0 6885 aaKnown RBP10.02□□□□□ -0.8
VEGFA-209ENST00000425836 CAMK2N1Q7Z7J9 78 aa9.97□□□□□ -0.81
VEGFA-209ENST00000425836 A8MU10 97 aa9.96□□□□□ -0.82
VEGFA-209ENST00000425836 KRTAP12-1P59990 96 aa9.96□□□□□ -0.82
VEGFA-209ENST00000425836 SPINT4Q6UDR6 99 aa9.96□□□□□ -0.82
VEGFA-209ENST00000425836 KRTAP6-3Q3LI67 103 aa9.91□□□□□ -0.82
VEGFA-209ENST00000425836 KRTAP12-2P59991 146 aa9.9□□□□□ -0.82
VEGFA-209ENST00000425836 UQCR11O14957 56 aa9.86□□□□□ -0.83
VEGFA-209ENST00000425836 KRTAP10-7P60409 375 aaPredicted RBP9.82□□□□□ -0.84
VEGFA-209ENST00000425836 A6NED7 52 aa9.77□□□□□ -0.85
VEGFA-209ENST00000425836 KMT2DO14686 5537 aa9.77□□□□□ -0.85
VEGFA-209ENST00000425836 KRTAP10-12P60413 245 aa9.75□□□□□ -0.85
VEGFA-209ENST00000425836 MIR22HGQ0VDD5 57 aa9.72□□□□□ -0.85
VEGFA-209ENST00000425836 KRTAP4-8A0A0G2JLE6 195 aa9.67□□□□□ -0.86
VEGFA-209ENST00000425836 KRTAP5-9P26371 169 aa9.67□□□□□ -0.86
VEGFA-209ENST00000425836 KRTAP4-8Q9BYQ9 185 aa9.67□□□□□ -0.86
VEGFA-209ENST00000425836 BRK1Q8WUW1 75 aa9.67□□□□□ -0.86
VEGFA-209ENST00000425836 KRTAP8-1Q8IUC2 63 aa9.63□□□□□ -0.87
VEGFA-209ENST00000425836 CDC42SE1Q9NRR8 79 aa9.58□□□□□ -0.88
VEGFA-209ENST00000425836 MUC12Q9UKN1 5478 aa9.54□□□□□ -0.88
VEGFA-209ENST00000425836 SPRR2FQ96RM1 72 aa9.5□□□□□ -0.89
VEGFA-209ENST00000425836 C10orf95Q9H7T3 257 aa9.49□□□□□ -0.89
VEGFA-209ENST00000425836 PMAIP1Q13794 54 aa9.46□□□□□ -0.9
VEGFA-209ENST00000425836 NEBP20929 6669 aa9.38□□□□□ -0.91
VEGFA-209ENST00000425836 K7ERS5 55 aa9.37□□□□□ -0.91
VEGFA-209ENST00000425836 MDN1Q9NU22 5596 aa9.36□□□□□ -0.91
VEGFA-209ENST00000425836 TNP1P09430 55 aa9.32□□□□□ -0.92
VEGFA-209ENST00000425836 SPRR2EP22531 72 aa9.24□□□□□ -0.93
VEGFA-209ENST00000425836 SPRR2BP35325 72 aa9.24□□□□□ -0.93
VEGFA-209ENST00000425836 SPRR2AP35326 72 aa9.24□□□□□ -0.93
VEGFA-209ENST00000425836 LCE1AQ5T7P2 110 aa9.2□□□□□ -0.94
VEGFA-209ENST00000425836 KRTAP19-7Q3SYF9 63 aa9.18□□□□□ -0.94
VEGFA-209ENST00000425836 KTN1-AS1Q86SY8 53 aa9.18□□□□□ -0.94
VEGFA-209ENST00000425836 LCE3AQ5TA76 89 aa9.12□□□□□ -0.95
VEGFA-209ENST00000425836 KRTAP19-5Q3LI72 72 aa9.08□□□□□ -0.96
VEGFA-209ENST00000425836 MT1EP04732 61 aa9.07□□□□□ -0.96
VEGFA-209ENST00000425836 KRTAP25-1Q3LHN0 102 aa9.05□□□□□ -0.96
VEGFA-209ENST00000425836 SPRR2DP22532 72 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms