RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HRES1P13985 223 aa5.17□□□□□ -1.58
CD44-207ENST00000425428 C4orf26Q17RF5 130 aa5.16□□□□□ -1.58
CD44-207ENST00000425428 SNURFQ9Y675 71 aa5.15□□□□□ -1.58
CD44-207ENST00000425428 NDUFC1O43677 76 aa5.14□□□□□ -1.59
CD44-207ENST00000425428 RNF213Q63HN8 5207 aa5.13□□□□□ -1.59
CD44-207ENST00000425428 KLKP1Q107X0 134 aa5.12□□□□□ -1.59
CD44-207ENST00000425428 A8MUN3 132 aa5.11□□□□□ -1.59
CD44-207ENST00000425428 KRTAP9-8Q9BYQ0 159 aa5.11□□□□□ -1.59
CD44-207ENST00000425428 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
CD44-207ENST00000425428 MPLKIPQ8TAP9 179 aa5.11□□□□□ -1.59
CD44-207ENST00000425428 H1FX-AS1Q4G0G2 97 aa5.1□□□□□ -1.59
CD44-207ENST00000425428 MUC2Q02817 5179 aa5.08□□□□□ -1.6
CD44-207ENST00000425428 M0R2T5 61 aa5.07□□□□□ -1.6
CD44-207ENST00000425428 SPANXA2-OT1Q8N9U9 137 aa5.06□□□□□ -1.6
CD44-207ENST00000425428 ACYP2P14621 99 aa5.05□□□□□ -1.6
CD44-207ENST00000425428 CCDC179H3BU77 68 aa5.04□□□□□ -1.6
CD44-207ENST00000425428 S4R3F8 94 aa5.04□□□□□ -1.6
CD44-207ENST00000425428 DMAC1Q96GE9 116 aa5.01□□□□□ -1.61
CD44-207ENST00000425428 CHKB-CPT1BH3BT56 60 aa5.01□□□□□ -1.61
CD44-207ENST00000425428 KRTAP19-2Q3LHN2 52 aa5□□□□□ -1.61
CD44-207ENST00000425428 SVIPQ8NHG7 77 aa5□□□□□ -1.61
CD44-207ENST00000425428 H7BZZ5 65 aa4.99□□□□□ -1.61
CD44-207ENST00000425428 ATP5EP56381 51 aaPredicted RBP4.99□□□□□ -1.61
CD44-207ENST00000425428 SPTSSBQ8NFR3 76 aa4.99□□□□□ -1.61
CD44-207ENST00000425428 KRTAP3-1Q9BYR8 98 aa4.98□□□□□ -1.61
CD44-207ENST00000425428 CSAG1Q6PB30 78 aa4.97□□□□□ -1.61
CD44-207ENST00000425428 MT1HP80294 61 aa4.96□□□□□ -1.61
CD44-207ENST00000425428 TMEM258P61165 79 aa4.95□□□□□ -1.62
CD44-207ENST00000425428 FAT4Q6V0I7 4981 aa4.95□□□□□ -1.62
CD44-207ENST00000425428 FLGP20930 4061 aaPredicted RBP4.94□□□□□ -1.62
CD44-207ENST00000425428 LCA10Q71F78 164 aa4.93□□□□□ -1.62
CD44-207ENST00000425428 CYSTM1Q9H1C7 97 aa4.93□□□□□ -1.62
CD44-207ENST00000425428 COA5Q86WW8 74 aa4.88□□□□□ -1.63
CD44-207ENST00000425428 KRTAP10-6P60371 365 aaPredicted RBP4.83□□□□□ -1.64
CD44-207ENST00000425428 SEC61GP60059 68 aa4.81□□□□□ -1.64
CD44-207ENST00000425428 SERP1Q9Y6X1 66 aa4.8□□□□□ -1.64
CD44-207ENST00000425428 H0YAA0 97 aa4.78□□□□□ -1.64
CD44-207ENST00000425428 KRTAP10-10P60014 251 aa4.77□□□□□ -1.65
CD44-207ENST00000425428 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
CD44-207ENST00000425428 RPS28P62857 69 aaKnown RBP4.73□□□□□ -1.65
CD44-207ENST00000425428 PRR15LQ9BU68 103 aa4.72□□□□□ -1.65
CD44-207ENST00000425428 CRIPTQ9P021 101 aa4.71□□□□□ -1.66
CD44-207ENST00000425428 MT2AP02795 61 aa4.7□□□□□ -1.66
CD44-207ENST00000425428 A0A1B0GU69 56 aa4.7□□□□□ -1.66
CD44-207ENST00000425428 V9GYY9 64 aa4.69□□□□□ -1.66
CD44-207ENST00000425428 R4GN34 69 aa4.66□□□□□ -1.66
CD44-207ENST00000425428 MT1FP04733 61 aa4.65□□□□□ -1.66
CD44-207ENST00000425428 LCE4AQ5TA78 99 aa4.65□□□□□ -1.66
CD44-207ENST00000425428 LCE5AQ5TCM9 118 aa4.65□□□□□ -1.66
CD44-207ENST00000425428 SMIM26A0A096LP01 95 aa4.65□□□□□ -1.67
CD44-207ENST00000425428 LINC01558Q9Y6Z2 57 aa4.63□□□□□ -1.67
CD44-207ENST00000425428 P0C880 135 aa4.62□□□□□ -1.67
CD44-207ENST00000425428 KRTAP19-4Q3LI73 84 aa4.62□□□□□ -1.67
CD44-207ENST00000425428 M0QZ58 72 aa4.61□□□□□ -1.67
CD44-207ENST00000425428 A0A1B0GU33 70 aa4.59□□□□□ -1.67
CD44-207ENST00000425428 Q1T7F1 81 aa4.58□□□□□ -1.68
CD44-207ENST00000425428 KRTAP9-3Q9BYQ3 159 aa4.56□□□□□ -1.68
CD44-207ENST00000425428 SPRR2GQ9BYE4 73 aa4.55□□□□□ -1.68
CD44-207ENST00000425428 LINC01554Q52M75 96 aa4.54□□□□□ -1.68
CD44-207ENST00000425428 Q5VV11 94 aa4.53□□□□□ -1.69
CD44-207ENST00000425428 UQCR11O14957 56 aa4.52□□□□□ -1.69
CD44-207ENST00000425428 PSPHP1O15172 72 aa4.51□□□□□ -1.69
CD44-207ENST00000425428 PLAC4Q8WY50 150 aa4.5□□□□□ -1.69
CD44-207ENST00000425428 SPATA8Q6RVD6 105 aa4.46□□□□□ -1.7
CD44-207ENST00000425428 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
CD44-207ENST00000425428 A0A0D9SG42 100 aa4.45□□□□□ -1.7
CD44-207ENST00000425428 A6NED7 52 aa4.45□□□□□ -1.7
CD44-207ENST00000425428 KRTAP9-7A8MTY7 169 aa4.44□□□□□ -1.7
CD44-207ENST00000425428 KRTAP19-8Q3LI54 63 aa4.44□□□□□ -1.7
CD44-207ENST00000425428 A6NN06 94 aa4.42□□□□□ -1.7
CD44-207ENST00000425428 MIR22HGQ0VDD5 57 aa4.42□□□□□ -1.7
CD44-207ENST00000425428 KRTAP13-4Q3LI77 160 aa4.41□□□□□ -1.7
CD44-207ENST00000425428 BRK1Q8WUW1 75 aa4.41□□□□□ -1.7
CD44-207ENST00000425428 K7ERS5 55 aa4.4□□□□□ -1.71
CD44-207ENST00000425428 SPINT4Q6UDR6 99 aa4.39□□□□□ -1.71
CD44-207ENST00000425428 CAMK2N1Q7Z7J9 78 aa4.37□□□□□ -1.71
CD44-207ENST00000425428 PRO2289Q9P1D8 64 aa4.36□□□□□ -1.71
CD44-207ENST00000425428 MT1BP07438 61 aa4.35□□□□□ -1.71
CD44-207ENST00000425428 A8MU10 97 aa4.34□□□□□ -1.71
CD44-207ENST00000425428 CRCT1Q9UGL9 99 aa4.33□□□□□ -1.72
CD44-207ENST00000425428 USH2AO75445 5202 aa4.31□□□□□ -1.72
CD44-207ENST00000425428 KRTAP12-1P59990 96 aa4.29□□□□□ -1.72
CD44-207ENST00000425428 CDC42SE1Q9NRR8 79 aa4.29□□□□□ -1.72
CD44-207ENST00000425428 KRTAP19-6Q3LI70 58 aa4.28□□□□□ -1.72
CD44-207ENST00000425428 FSIP2Q5CZC0 6907 aa4.28□□□□□ -1.72
CD44-207ENST00000425428 KRTAP12-2P59991 146 aa4.26□□□□□ -1.73
CD44-207ENST00000425428 KRTAP10-5P60370 271 aa4.23□□□□□ -1.73
CD44-207ENST00000425428 PMAIP1Q13794 54 aa4.21□□□□□ -1.74
CD44-207ENST00000425428 SSPOA2VEC9 5147 aa4.2□□□□□ -1.74
CD44-207ENST00000425428 MT1XP80297 61 aa4.17□□□□□ -1.74
CD44-207ENST00000425428 TNP1P09430 55 aa4.11□□□□□ -1.75
CD44-207ENST00000425428 FCGBPQ9Y6R7 5405 aaPredicted RBP4.09□□□□□ -1.75
CD44-207ENST00000425428 KTN1-AS1Q86SY8 53 aa4.08□□□□□ -1.76
CD44-207ENST00000425428 ROMO1P60602 79 aa4.05□□□□□ -1.76
CD44-207ENST00000425428 C10orf95Q9H7T3 257 aa4.05□□□□□ -1.76
CD44-207ENST00000425428 KRTAP25-1Q3LHN0 102 aa4.03□□□□□ -1.76
CD44-207ENST00000425428 H3BS24 57 aa4.01□□□□□ -1.77
CD44-207ENST00000425428 KRTAP10-7P60409 375 aaPredicted RBP3.99□□□□□ -1.77
CD44-207ENST00000425428 KRTAP10-12P60413 245 aa3.99□□□□□ -1.77
CD44-207ENST00000425428 MACF1Q9UPN3 7388 aaKnown RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms