RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 LCA10Q71F78 164 aa7.6□□□□□ -1.19
DDX55-203ENST00000421670 DMAC1Q96GE9 116 aa7.6□□□□□ -1.19
DDX55-203ENST00000421670 CCDC179H3BU77 68 aa7.59□□□□□ -1.19
DDX55-203ENST00000421670 SPANXA2-OT1Q8N9U9 137 aa7.54□□□□□ -1.2
DDX55-203ENST00000421670 H7BZZ5 65 aa7.54□□□□□ -1.2
DDX55-203ENST00000421670 NDUFC1O43677 76 aa7.53□□□□□ -1.2
DDX55-203ENST00000421670 ACYP2P14621 99 aa7.48□□□□□ -1.21
DDX55-203ENST00000421670 KRTAP9-8Q9BYQ0 159 aa7.48□□□□□ -1.21
DDX55-203ENST00000421670 CSAG1Q6PB30 78 aa7.47□□□□□ -1.21
DDX55-203ENST00000421670 MT2AP02795 61 aa7.43□□□□□ -1.22
DDX55-203ENST00000421670 H3BS24 57 aa7.4□□□□□ -1.22
DDX55-203ENST00000421670 MT1FP04733 61 aa7.39□□□□□ -1.23
DDX55-203ENST00000421670 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
DDX55-203ENST00000421670 KRTAP10-10P60014 251 aa7.35□□□□□ -1.23
DDX55-203ENST00000421670 COA5Q86WW8 74 aa7.34□□□□□ -1.23
DDX55-203ENST00000421670 PCP4P48539 62 aa7.31□□□□□ -1.24
DDX55-203ENST00000421670 TMEM258P61165 79 aa7.29□□□□□ -1.24
DDX55-203ENST00000421670 ATP5EP56381 51 aaPredicted RBP7.29□□□□□ -1.24
DDX55-203ENST00000421670 SPTSSBQ8NFR3 76 aa7.28□□□□□ -1.24
DDX55-203ENST00000421670 H0YAA0 97 aa7.25□□□□□ -1.25
DDX55-203ENST00000421670 ADM2Q7Z4H4 148 aa7.24□□□□□ -1.25
DDX55-203ENST00000421670 KRTAP9-3Q9BYQ3 159 aa7.22□□□□□ -1.25
DDX55-203ENST00000421670 KRTAP9-2Q9BYQ4 174 aa7.2□□□□□ -1.26
DDX55-203ENST00000421670 P0C880 135 aa7.16□□□□□ -1.26
DDX55-203ENST00000421670 KRTAP19-1Q8IUB9 90 aa7.09□□□□□ -1.27
DDX55-203ENST00000421670 USH2AO75445 5202 aa7.08□□□□□ -1.28
DDX55-203ENST00000421670 FSIP2Q5CZC0 6907 aa7.08□□□□□ -1.28
DDX55-203ENST00000421670 CRIPTQ9P021 101 aa7.07□□□□□ -1.28
DDX55-203ENST00000421670 SERP1Q9Y6X1 66 aa7.06□□□□□ -1.28
DDX55-203ENST00000421670 SPRR2GQ9BYE4 73 aa7.05□□□□□ -1.28
DDX55-203ENST00000421670 R4GN34 69 aa7.01□□□□□ -1.29
DDX55-203ENST00000421670 SEC61GP60059 68 aa6.99□□□□□ -1.29
DDX55-203ENST00000421670 M0QZ58 72 aa6.99□□□□□ -1.29
DDX55-203ENST00000421670 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
DDX55-203ENST00000421670 KRTAP4-6Q9BYQ5 205 aa6.95□□□□□ -1.3
DDX55-203ENST00000421670 A0A1B0GU69 56 aa6.95□□□□□ -1.3
DDX55-203ENST00000421670 SSPOA2VEC9 5147 aa6.92□□□□□ -1.3
DDX55-203ENST00000421670 KRTAP19-8Q3LI54 63 aa6.92□□□□□ -1.3
DDX55-203ENST00000421670 Q5VV11 94 aa6.9□□□□□ -1.31
DDX55-203ENST00000421670 LINC01558Q9Y6Z2 57 aa6.9□□□□□ -1.31
DDX55-203ENST00000421670 MT1BP07438 61 aa6.89□□□□□ -1.31
DDX55-203ENST00000421670 KRTAP13-4Q3LI77 160 aa6.88□□□□□ -1.31
DDX55-203ENST00000421670 LINC01554Q52M75 96 aa6.88□□□□□ -1.31
DDX55-203ENST00000421670 CRCT1Q9UGL9 99 aa6.86□□□□□ -1.31
DDX55-203ENST00000421670 A0A1B0GU33 70 aa6.85□□□□□ -1.31
DDX55-203ENST00000421670 PRR15LQ9BU68 103 aa6.85□□□□□ -1.31
DDX55-203ENST00000421670 RPS28P62857 69 aaKnown RBP6.82□□□□□ -1.32
DDX55-203ENST00000421670 SMIM26A0A096LP01 95 aa6.81□□□□□ -1.32
DDX55-203ENST00000421670 SPATA8Q6RVD6 105 aa6.81□□□□□ -1.32
DDX55-203ENST00000421670 KRTAP9-6A0A140TA67 174 aa6.78□□□□□ -1.32
DDX55-203ENST00000421670 Q1T7F1 81 aa6.78□□□□□ -1.32
DDX55-203ENST00000421670 V9GYY9 64 aa6.76□□□□□ -1.33
DDX55-203ENST00000421670 KRTAP19-6Q3LI70 58 aa6.74□□□□□ -1.33
DDX55-203ENST00000421670 A0A0D9SG42 100 aa6.73□□□□□ -1.33
DDX55-203ENST00000421670 PSPHP1O15172 72 aa6.73□□□□□ -1.33
DDX55-203ENST00000421670 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
DDX55-203ENST00000421670 A0A0A0MQY5 61 aa6.69□□□□□ -1.34
DDX55-203ENST00000421670 FCGBPQ9Y6R7 5405 aaPredicted RBP6.69□□□□□ -1.34
DDX55-203ENST00000421670 A6NN06 94 aa6.68□□□□□ -1.34
DDX55-203ENST00000421670 A8MU10 97 aa6.65□□□□□ -1.34
DDX55-203ENST00000421670 UQCR11O14957 56 aa6.65□□□□□ -1.35
DDX55-203ENST00000421670 KRTAP10-5P60370 271 aa6.61□□□□□ -1.35
DDX55-203ENST00000421670 MT1XP80297 61 aa6.58□□□□□ -1.36
DDX55-203ENST00000421670 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
DDX55-203ENST00000421670 SPINT4Q6UDR6 99 aa6.57□□□□□ -1.36
DDX55-203ENST00000421670 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
DDX55-203ENST00000421670 MIR22HGQ0VDD5 57 aa6.55□□□□□ -1.36
DDX55-203ENST00000421670 PRO2289Q9P1D8 64 aa6.53□□□□□ -1.36
DDX55-203ENST00000421670 CAMK2N1Q7Z7J9 78 aa6.52□□□□□ -1.37
DDX55-203ENST00000421670 A6NED7 52 aa6.51□□□□□ -1.37
DDX55-203ENST00000421670 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
DDX55-203ENST00000421670 MACF1Q9UPN3 7388 aaKnown RBP6.44□□□□□ -1.38
DDX55-203ENST00000421670 KRTAP19-4Q3LI73 84 aa6.44□□□□□ -1.38
DDX55-203ENST00000421670 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.38□□□□□ -1.39
DDX55-203ENST00000421670 KRTAP4-12Q9BQ66 201 aa6.35□□□□□ -1.39
DDX55-203ENST00000421670 KMT2DO14686 5537 aa6.32□□□□□ -1.4
DDX55-203ENST00000421670 CDC42SE1Q9NRR8 79 aa6.31□□□□□ -1.4
DDX55-203ENST00000421670 KRTAP10-7P60409 375 aaPredicted RBP6.31□□□□□ -1.4
DDX55-203ENST00000421670 K7ERS5 55 aa6.3□□□□□ -1.4
DDX55-203ENST00000421670 SYNE2Q8WXH0 6885 aaKnown RBP6.29□□□□□ -1.4
DDX55-203ENST00000421670 C10orf95Q9H7T3 257 aa6.25□□□□□ -1.41
DDX55-203ENST00000421670 KRTAP10-12P60413 245 aa6.23□□□□□ -1.41
DDX55-203ENST00000421670 LCE3BQ5TA77 95 aa6.23□□□□□ -1.41
DDX55-203ENST00000421670 KRTAP4-8A0A0G2JLE6 195 aa6.17□□□□□ -1.42
DDX55-203ENST00000421670 KRTAP9-7A8MTY7 169 aa6.16□□□□□ -1.42
DDX55-203ENST00000421670 BRK1Q8WUW1 75 aa6.14□□□□□ -1.43
DDX55-203ENST00000421670 KRTAP23-1A1A580 65 aa6.1□□□□□ -1.43
DDX55-203ENST00000421670 TNP1P09430 55 aa6.1□□□□□ -1.43
DDX55-203ENST00000421670 KRTAP8-1Q8IUC2 63 aa6.1□□□□□ -1.43
DDX55-203ENST00000421670 KRTAP6-3Q3LI67 103 aa6.08□□□□□ -1.44
DDX55-203ENST00000421670 PRO0628Q9UI54 55 aa6.07□□□□□ -1.44
DDX55-203ENST00000421670 LCE4AQ5TA78 99 aa6.06□□□□□ -1.44
DDX55-203ENST00000421670 KRTAP9-9Q9BYP9 154 aa6.03□□□□□ -1.44
DDX55-203ENST00000421670 KRTAP9-4Q9BYQ2 154 aa6.03□□□□□ -1.44
DDX55-203ENST00000421670 KRTAP5-9P26371 169 aa6.01□□□□□ -1.45
DDX55-203ENST00000421670 MUC12Q9UKN1 5478 aa5.99□□□□□ -1.45
DDX55-203ENST00000421670 ROMO1P60602 79 aa5.99□□□□□ -1.45
DDX55-203ENST00000421670 SPRR2FQ96RM1 72 aa5.99□□□□□ -1.45
DDX55-203ENST00000421670 KRTAP25-1Q3LHN0 102 aa5.98□□□□□ -1.45
DDX55-203ENST00000421670 LCE3AQ5TA76 89 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms