RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 A6NED7 52 aa10.79□□□□□ -0.68
GPC1-202ENST00000420138 COX6B2Q6YFQ2 88 aa10.76□□□□□ -0.69
GPC1-202ENST00000420138 A0A1B0GU69 56 aa10.72□□□□□ -0.69
GPC1-202ENST00000420138 MUC17Q685J3 4493 aa10.69□□□□□ -0.7
GPC1-202ENST00000420138 SPTSSBQ8NFR3 76 aa10.68□□□□□ -0.7
GPC1-202ENST00000420138 LCA10Q71F78 164 aa10.68□□□□□ -0.7
GPC1-202ENST00000420138 A8MU10 97 aa10.66□□□□□ -0.7
GPC1-202ENST00000420138 CDC42SE1Q9NRR8 79 aa10.65□□□□□ -0.7
GPC1-202ENST00000420138 KRTAP4-1Q9BYQ7 146 aa10.64□□□□□ -0.71
GPC1-202ENST00000420138 SEC61GP60059 68 aa10.53□□□□□ -0.72
GPC1-202ENST00000420138 UQCR11O14957 56 aa10.48□□□□□ -0.73
GPC1-202ENST00000420138 RBM12B-AS1Q9P1G2 102 aa10.48□□□□□ -0.73
GPC1-202ENST00000420138 H1FX-AS1Q4G0G2 97 aa10.46□□□□□ -0.74
GPC1-202ENST00000420138 KRTAP3-3Q9BYR6 98 aa10.45□□□□□ -0.74
GPC1-202ENST00000420138 SPATA8Q6RVD6 105 aa10.44□□□□□ -0.74
GPC1-202ENST00000420138 PMAIP1Q13794 54 aa10.42□□□□□ -0.74
GPC1-202ENST00000420138 MUC2Q02817 5179 aa10.42□□□□□ -0.74
GPC1-202ENST00000420138 MIR22HGQ0VDD5 57 aa10.4□□□□□ -0.74
GPC1-202ENST00000420138 KRTAP19-2Q3LHN2 52 aa10.4□□□□□ -0.75
GPC1-202ENST00000420138 S4R3F8 94 aa10.39□□□□□ -0.75
GPC1-202ENST00000420138 UBR4Q5T4S7 5183 aa10.31□□□□□ -0.76
GPC1-202ENST00000420138 A6NN06 94 aa10.3□□□□□ -0.76
GPC1-202ENST00000420138 A0A1B0GU33 70 aa10.26□□□□□ -0.77
GPC1-202ENST00000420138 RNF213Q63HN8 5207 aa10.19□□□□□ -0.78
GPC1-202ENST00000420138 H0YAA0 97 aa10.17□□□□□ -0.78
GPC1-202ENST00000420138 CSAG1Q6PB30 78 aa10.14□□□□□ -0.79
GPC1-202ENST00000420138 KTN1-AS1Q86SY8 53 aa10.12□□□□□ -0.79
GPC1-202ENST00000420138 KRTAP10-6P60371 365 aaPredicted RBP10.1□□□□□ -0.79
GPC1-202ENST00000420138 KRTAP3-2Q9BYR7 98 aa10.1□□□□□ -0.79
GPC1-202ENST00000420138 LCE2CQ5TA81 110 aa10.1□□□□□ -0.79
GPC1-202ENST00000420138 FLGP20930 4061 aaPredicted RBP10.06□□□□□ -0.8
GPC1-202ENST00000420138 FAT4Q6V0I7 4981 aa10□□□□□ -0.81
GPC1-202ENST00000420138 P0C880 135 aa9.98□□□□□ -0.81
GPC1-202ENST00000420138 ADM2Q7Z4H4 148 aa9.97□□□□□ -0.81
GPC1-202ENST00000420138 KRTAP13-4Q3LI77 160 aa9.89□□□□□ -0.83
GPC1-202ENST00000420138 MT1HP80294 61 aa9.89□□□□□ -0.83
GPC1-202ENST00000420138 K7ERS5 55 aa9.84□□□□□ -0.83
GPC1-202ENST00000420138 M0R2T5 61 aa9.83□□□□□ -0.84
GPC1-202ENST00000420138 A0A0D9SG42 100 aa9.77□□□□□ -0.85
GPC1-202ENST00000420138 PRAC1Q96KF2 57 aa9.73□□□□□ -0.85
GPC1-202ENST00000420138 M0QZ58 72 aa9.72□□□□□ -0.85
GPC1-202ENST00000420138 LORP23490 312 aaPredicted RBP9.71□□□□□ -0.85
GPC1-202ENST00000420138 LCE2AQ5TA79 106 aaPredicted RBP9.6□□□□□ -0.87
GPC1-202ENST00000420138 R4GN34 69 aa9.56□□□□□ -0.88
GPC1-202ENST00000420138 KRTAP12-2P59991 146 aa9.54□□□□□ -0.88
GPC1-202ENST00000420138 KRTAP12-1P59990 96 aa9.54□□□□□ -0.88
GPC1-202ENST00000420138 ROMO1P60602 79 aa9.52□□□□□ -0.89
GPC1-202ENST00000420138 KRTAP9-8Q9BYQ0 159 aa9.52□□□□□ -0.89
GPC1-202ENST00000420138 SPINT4Q6UDR6 99 aa9.5□□□□□ -0.89
GPC1-202ENST00000420138 MT2AP02795 61 aa9.47□□□□□ -0.89
GPC1-202ENST00000420138 CRIPTQ9P021 101 aa9.45□□□□□ -0.9
GPC1-202ENST00000420138 MT1FP04733 61 aa9.44□□□□□ -0.9
GPC1-202ENST00000420138 LINC01554Q52M75 96 aa9.41□□□□□ -0.9
GPC1-202ENST00000420138 KRTAP10-10P60014 251 aa9.39□□□□□ -0.91
GPC1-202ENST00000420138 KRTAP25-1Q3LHN0 102 aa9.38□□□□□ -0.91
GPC1-202ENST00000420138 KRTAP19-1Q8IUB9 90 aa9.32□□□□□ -0.92
GPC1-202ENST00000420138 SPRR2GQ9BYE4 73 aa9.31□□□□□ -0.92
GPC1-202ENST00000420138 KRTAP9-3Q9BYQ3 159 aa9.16□□□□□ -0.94
GPC1-202ENST00000420138 KRTAP19-8Q3LI54 63 aa9.06□□□□□ -0.96
GPC1-202ENST00000420138 C10orf95Q9H7T3 257 aa9.06□□□□□ -0.96
GPC1-202ENST00000420138 CAMK2N1Q7Z7J9 78 aa8.99□□□□□ -0.97
GPC1-202ENST00000420138 MT1BP07438 61 aa8.96□□□□□ -0.97
GPC1-202ENST00000420138 PLAC4Q8WY50 150 aa8.93□□□□□ -0.98
GPC1-202ENST00000420138 LCE2BO14633 110 aa8.92□□□□□ -0.98
GPC1-202ENST00000420138 LCE2DQ5TA82 110 aaPredicted RBP8.77□□□□□ -1.01
GPC1-202ENST00000420138 USH2AO75445 5202 aa8.69□□□□□ -1.02
GPC1-202ENST00000420138 MT1XP80297 61 aa8.68□□□□□ -1.02
GPC1-202ENST00000420138 KRTAP10-5P60370 271 aa8.68□□□□□ -1.02
GPC1-202ENST00000420138 TNP1P09430 55 aa8.64□□□□□ -1.03
GPC1-202ENST00000420138 PP632Q6XCG6 107 aa8.64□□□□□ -1.03
GPC1-202ENST00000420138 KRTAP9-2Q9BYQ4 174 aa8.54□□□□□ -1.04
GPC1-202ENST00000420138 KRTAP23-1A1A580 65 aa8.5□□□□□ -1.05
GPC1-202ENST00000420138 PRO2289Q9P1D8 64 aa8.49□□□□□ -1.05
GPC1-202ENST00000420138 FSIP2Q5CZC0 6907 aa8.48□□□□□ -1.05
GPC1-202ENST00000420138 KRTAP15-1Q3LI76 137 aa8.43□□□□□ -1.06
GPC1-202ENST00000420138 SSPOA2VEC9 5147 aa8.41□□□□□ -1.06
GPC1-202ENST00000420138 KRTAP19-6Q3LI70 58 aa8.41□□□□□ -1.06
GPC1-202ENST00000420138 KRTAP10-7P60409 375 aaPredicted RBP8.36□□□□□ -1.07
GPC1-202ENST00000420138 LCE3AQ5TA76 89 aa8.24□□□□□ -1.09
GPC1-202ENST00000420138 CRCT1Q9UGL9 99 aa8.22□□□□□ -1.09
GPC1-202ENST00000420138 KRTAP10-12P60413 245 aa8.21□□□□□ -1.1
GPC1-202ENST00000420138 KRTAP8-1Q8IUC2 63 aa8.08□□□□□ -1.12
GPC1-202ENST00000420138 FCGBPQ9Y6R7 5405 aaPredicted RBP8.06□□□□□ -1.12
GPC1-202ENST00000420138 KMT2DO14686 5537 aa8.03□□□□□ -1.12
GPC1-202ENST00000420138 KRTAP4-8A0A0G2JLE6 195 aa8.02□□□□□ -1.13
GPC1-202ENST00000420138 KRTAP4-8Q9BYQ9 185 aa8.02□□□□□ -1.13
GPC1-202ENST00000420138 NDUFAF8A1L188 74 aa7.99□□□□□ -1.13
GPC1-202ENST00000420138 KRTAP9-6A0A140TA67 174 aa7.93□□□□□ -1.14
GPC1-202ENST00000420138 KRTAP12-3P60328 96 aa7.89□□□□□ -1.15
GPC1-202ENST00000420138 KRTAP19-5Q3LI72 72 aa7.85□□□□□ -1.15
GPC1-202ENST00000420138 SPRR5A0A1B0GTR4 108 aa7.85□□□□□ -1.15
GPC1-202ENST00000420138 LUZP6Q538Z0 58 aa7.82□□□□□ -1.16
GPC1-202ENST00000420138 MACF1Q9UPN3 7388 aaKnown RBP7.79□□□□□ -1.16
GPC1-202ENST00000420138 H3BS24 57 aa7.78□□□□□ -1.16
GPC1-202ENST00000420138 KRTAP19-7Q3SYF9 63 aa7.77□□□□□ -1.17
GPC1-202ENST00000420138 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.61□□□□□ -1.19
GPC1-202ENST00000420138 MT1EP04732 61 aa7.59□□□□□ -1.19
GPC1-202ENST00000420138 SYNE2Q8WXH0 6885 aaKnown RBP7.53□□□□□ -1.2
GPC1-202ENST00000420138 SPRR2FQ96RM1 72 aa7.5□□□□□ -1.21
GPC1-202ENST00000420138 MT1LQ93083 61 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms