RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MXRA5Q9NR99 2828 aa1.4□□□□□ -2.19
VPS54-204ENST00000416400 ITPR3Q14573 2671 aa1.4□□□□□ -2.19
VPS54-204ENST00000416400 STAB2Q8WWQ8 2551 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 CELSR1Q9NYQ6 3014 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 SVEP1Q4LDE5 3571 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 DMXL1Q9Y485 3027 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 DCHS2Q6V1P9 2916 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 ASPMQ8IZT6 3477 aa1.38□□□□□ -2.19
VPS54-204ENST00000416400 FLNAP21333 2647 aaKnown RBP1.37□□□□□ -2.19
VPS54-204ENST00000416400 UBR5O95071 2799 aaPredicted RBP1.37□□□□□ -2.19
VPS54-204ENST00000416400 TGP01266 2768 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 COL12A1Q99715 3063 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 CFAP46Q8IYW2 2715 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 NBPF19A0A087WUL8 3843 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 DNAH1Q9P2D7 4330 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 HECTD1Q9ULT8 2610 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 CELSR2Q9HCU4 2923 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 BOD1L1Q8NFC6 3051 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 NIPBLQ6KC79 2804 aaeCLIP1.36□□□□□ -2.19
VPS54-204ENST00000416400 KRTAP4-1Q9BYQ7 146 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 FBN3Q75N90 2809 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 BSNQ9UPA5 3926 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 HIVEP1P15822 2718 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 SRRM2Q9UQ35 2752 aaKnown RBP1.36□□□□□ -2.19
VPS54-204ENST00000416400 ATMQ13315 3056 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 TEP1Q99973 2627 aaKnown RBP1.35□□□□□ -2.19
VPS54-204ENST00000416400 TENM4Q6N022 2769 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 COL6A5A8TX70 2615 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 ATRQ13535 2644 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 NBEAL1Q6ZS30 2694 aa1.34□□□□□ -2.19
VPS54-204ENST00000416400 MAST4O15021 2626 aa1.34□□□□□ -2.19
VPS54-204ENST00000416400 AKAP9Q99996 3911 aa1.34□□□□□ -2.2
VPS54-204ENST00000416400 FBN2P35556 2912 aa1.33□□□□□ -2.2
VPS54-204ENST00000416400 ZANQ9Y493 2812 aa1.33□□□□□ -2.2
VPS54-204ENST00000416400 NSD1Q96L73 2696 aaPredicted RBP1.33□□□□□ -2.2
VPS54-204ENST00000416400 FLNBO75369 2602 aaKnown RBP1.33□□□□□ -2.2
VPS54-204ENST00000416400 OTOGQ6ZRI0 2925 aa1.32□□□□□ -2.2
VPS54-204ENST00000416400 ANK3Q12955 4377 aaKnown RBP1.32□□□□□ -2.2
VPS54-204ENST00000416400 RELNP78509 3460 aa1.32□□□□□ -2.2
VPS54-204ENST00000416400 LAMA5O15230 3695 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 STAB1Q9NY15 2570 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 CRYBG3Q68DQ2 2970 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 NOTCH1P46531 2555 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 TENM3Q9P273 2699 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 ITPR2Q14571 2701 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 FCGBPQ9Y6R7 5405 aaPredicted RBP1.3□□□□□ -2.2
VPS54-204ENST00000416400 DNAH8Q96JB1 4490 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 FLNCQ14315 2725 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 SMR3BP02814 79 aaPredicted RBP1.3□□□□□ -2.2
VPS54-204ENST00000416400 EYSQ5T1H1 3165 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 IGSF10Q6WRI0 2623 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 VPS13DQ5THJ4 4388 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 PDZD2O15018 2839 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 DNAH10Q8IVF4 4471 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 MGAM2Q2M2H8 2515 aa1.28□□□□□ -2.2
VPS54-204ENST00000416400 VWFP04275 2813 aa1.28□□□□□ -2.2
VPS54-204ENST00000416400 DNAH11Q96DT5 4516 aa1.27□□□□□ -2.21
VPS54-204ENST00000416400 VPS13CQ709C8 3753 aa1.27□□□□□ -2.21
VPS54-204ENST00000416400 GPR98Q8WXG9 6306 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 TENM1Q9UKZ4 2725 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 MEGF8Q7Z7M0 2845 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 HUWE1Q7Z6Z7 4374 aaKnown RBP1.26□□□□□ -2.21
VPS54-204ENST00000416400 USP24Q9UPU5 2620 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 DNAH3Q8TD57 4116 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH9Q9NYC9 4486 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH2Q9P225 4427 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 KRTAP8-1Q8IUC2 63 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH17Q9UFH2 4485 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 PKD1L1Q8TDX9 2849 aa1.24□□□□□ -2.21
VPS54-204ENST00000416400 CUBNO60494 3623 aa1.24□□□□□ -2.21
VPS54-204ENST00000416400 DYNC2H1Q8NCM8 4307 aaKnown RBP1.23□□□□□ -2.21
VPS54-204ENST00000416400 CSMD2Q7Z408 3487 aa1.23□□□□□ -2.21
VPS54-204ENST00000416400 MUC3AQ02505 3323 aa1.23□□□□□ -2.21
VPS54-204ENST00000416400 SACSQ9NZJ4 4579 aa1.22□□□□□ -2.21
VPS54-204ENST00000416400 DNAH6Q9C0G6 4158 aa1.21□□□□□ -2.22
VPS54-204ENST00000416400 TRRAPQ9Y4A5 3859 aa1.21□□□□□ -2.22
VPS54-204ENST00000416400 CMYA5Q8N3K9 4069 aa1.2□□□□□ -2.22
VPS54-204ENST00000416400 COL7A1Q02388 2944 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 LRP1BQ9NZR2 4599 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 ANK2Q01484 3957 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 SPRR2GQ9BYE4 73 aa1.18□□□□□ -2.22
VPS54-204ENST00000416400 M0R2T5 61 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 FRAS1Q86XX4 4008 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 LYSTQ99698 3801 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 ZNF469Q96JG9 3925 aaPredicted RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 MT1HL1P0DM35 61 aa1.16□□□□□ -2.22
VPS54-204ENST00000416400 APOBP04114 4563 aaKnown RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 PLECQ15149 4684 aaKnown RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 PKHD1L1Q86WI1 4243 aa1.16□□□□□ -2.22
VPS54-204ENST00000416400 LRP1Q07954 4544 aaKnown RBP1.15□□□□□ -2.22
VPS54-204ENST00000416400 PRKDCP78527 4128 aaKnown RBP1.14□□□□□ -2.23
VPS54-204ENST00000416400 HECTD4Q9Y4D8 3996 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 MYCBP2O75592 4640 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 CSMD3Q7Z407 3707 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 STARD9Q9P2P6 4700 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-3P0C7H8 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-4Q9BYR9 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-1Q9BYU5 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 DNAH5Q8TE73 4624 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 DYNC1H1Q14204 4646 aaKnown RBP1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms