RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 S4R3F8 94 aa6.96□□□□□ -1.3
SF3B1-204ENST00000414963 LCA10Q71F78 164 aa6.93□□□□□ -1.3
SF3B1-204ENST00000414963 LCE2AQ5TA79 106 aaPredicted RBP6.92□□□□□ -1.3
SF3B1-204ENST00000414963 KRTAP3-3Q9BYR6 98 aa6.92□□□□□ -1.3
SF3B1-204ENST00000414963 COA5Q86WW8 74 aa6.87□□□□□ -1.31
SF3B1-204ENST00000414963 M0R2T5 61 aa6.86□□□□□ -1.31
SF3B1-204ENST00000414963 CSAG1Q6PB30 78 aa6.86□□□□□ -1.31
SF3B1-204ENST00000414963 CHKB-CPT1BH3BT56 60 aa6.85□□□□□ -1.31
SF3B1-204ENST00000414963 KRTAP3-2Q9BYR7 98 aa6.84□□□□□ -1.31
SF3B1-204ENST00000414963 SPTSSBQ8NFR3 76 aa6.81□□□□□ -1.32
SF3B1-204ENST00000414963 SERP1Q9Y6X1 66 aa6.78□□□□□ -1.32
SF3B1-204ENST00000414963 KRTAP10-6P60371 365 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-204ENST00000414963 LORP23490 312 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-204ENST00000414963 H0YAA0 97 aa6.72□□□□□ -1.33
SF3B1-204ENST00000414963 KRTAP9-8Q9BYQ0 159 aa6.72□□□□□ -1.33
SF3B1-204ENST00000414963 RPS28P62857 69 aaKnown RBP6.69□□□□□ -1.34
SF3B1-204ENST00000414963 MT2AP02795 61 aa6.66□□□□□ -1.34
SF3B1-204ENST00000414963 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
SF3B1-204ENST00000414963 MT1FP04733 61 aa6.6□□□□□ -1.35
SF3B1-204ENST00000414963 SMIM26A0A096LP01 95 aa6.57□□□□□ -1.36
SF3B1-204ENST00000414963 KRTAP10-10P60014 251 aa6.57□□□□□ -1.36
SF3B1-204ENST00000414963 LINC01558Q9Y6Z2 57 aa6.56□□□□□ -1.36
SF3B1-204ENST00000414963 P0C880 135 aa6.54□□□□□ -1.36
SF3B1-204ENST00000414963 SEC61GP60059 68 aa6.54□□□□□ -1.36
SF3B1-204ENST00000414963 CRIPTQ9P021 101 aa6.52□□□□□ -1.37
SF3B1-204ENST00000414963 Q1T7F1 81 aa6.51□□□□□ -1.37
SF3B1-204ENST00000414963 V9GYY9 64 aa6.51□□□□□ -1.37
SF3B1-204ENST00000414963 A0A1B0GU69 56 aa6.5□□□□□ -1.37
SF3B1-204ENST00000414963 KRTAP9-3Q9BYQ3 159 aa6.49□□□□□ -1.37
SF3B1-204ENST00000414963 PRR15LQ9BU68 103 aa6.47□□□□□ -1.37
SF3B1-204ENST00000414963 SPRR2GQ9BYE4 73 aa6.43□□□□□ -1.38
SF3B1-204ENST00000414963 KRTAP19-1Q8IUB9 90 aa6.42□□□□□ -1.38
SF3B1-204ENST00000414963 M0QZ58 72 aa6.41□□□□□ -1.38
SF3B1-204ENST00000414963 A0A1B0GU33 70 aa6.4□□□□□ -1.38
SF3B1-204ENST00000414963 R4GN34 69 aa6.39□□□□□ -1.39
SF3B1-204ENST00000414963 PSPHP1O15172 72 aa6.34□□□□□ -1.39
SF3B1-204ENST00000414963 KRTAP13-4Q3LI77 160 aa6.33□□□□□ -1.4
SF3B1-204ENST00000414963 Q5VV11 94 aa6.33□□□□□ -1.4
SF3B1-204ENST00000414963 LCE2BO14633 110 aa6.32□□□□□ -1.4
SF3B1-204ENST00000414963 KRTAP19-8Q3LI54 63 aa6.31□□□□□ -1.4
SF3B1-204ENST00000414963 UQCR11O14957 56 aa6.28□□□□□ -1.4
SF3B1-204ENST00000414963 SPATA8Q6RVD6 105 aa6.27□□□□□ -1.41
SF3B1-204ENST00000414963 A6NN06 94 aa6.22□□□□□ -1.41
SF3B1-204ENST00000414963 LINC01554Q52M75 96 aa6.22□□□□□ -1.41
SF3B1-204ENST00000414963 KRTAP9-2Q9BYQ4 174 aa6.22□□□□□ -1.41
SF3B1-204ENST00000414963 MT1BP07438 61 aa6.21□□□□□ -1.42
SF3B1-204ENST00000414963 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
SF3B1-204ENST00000414963 USH2AO75445 5202 aa6.16□□□□□ -1.42
SF3B1-204ENST00000414963 A6NED7 52 aa6.16□□□□□ -1.42
SF3B1-204ENST00000414963 A0A0D9SG42 100 aa6.15□□□□□ -1.42
SF3B1-204ENST00000414963 A8MU10 97 aa6.14□□□□□ -1.43
SF3B1-204ENST00000414963 PLAC4Q8WY50 150 aa6.13□□□□□ -1.43
SF3B1-204ENST00000414963 KRTAP12-1P59990 96 aa6.1□□□□□ -1.43
SF3B1-204ENST00000414963 KRTAP12-2P59991 146 aa6.05□□□□□ -1.44
SF3B1-204ENST00000414963 CDC42SE1Q9NRR8 79 aa6.05□□□□□ -1.44
SF3B1-204ENST00000414963 KRTAP19-6Q3LI70 58 aa6.03□□□□□ -1.44
SF3B1-204ENST00000414963 SPINT4Q6UDR6 99 aa6.03□□□□□ -1.44
SF3B1-204ENST00000414963 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
SF3B1-204ENST00000414963 LOC100996750A0A140TA64 210 aa5.99□□□□□ -1.45
SF3B1-204ENST00000414963 KRTAP4-6Q9BYQ5 205 aa5.99□□□□□ -1.45
SF3B1-204ENST00000414963 CRCT1Q9UGL9 99 aa5.98□□□□□ -1.45
SF3B1-204ENST00000414963 FSIP2Q5CZC0 6907 aa5.97□□□□□ -1.45
SF3B1-204ENST00000414963 KRTAP10-5P60370 271 aa5.96□□□□□ -1.46
SF3B1-204ENST00000414963 MT1XP80297 61 aa5.95□□□□□ -1.46
SF3B1-204ENST00000414963 CAMK2N1Q7Z7J9 78 aa5.95□□□□□ -1.46
SF3B1-204ENST00000414963 K7ERS5 55 aa5.94□□□□□ -1.46
SF3B1-204ENST00000414963 PRO2289Q9P1D8 64 aa5.93□□□□□ -1.46
SF3B1-204ENST00000414963 BRK1Q8WUW1 75 aa5.89□□□□□ -1.47
SF3B1-204ENST00000414963 KRTAP9-6A0A140TA67 174 aa5.83□□□□□ -1.48
SF3B1-204ENST00000414963 FCGBPQ9Y6R7 5405 aaPredicted RBP5.8□□□□□ -1.48
SF3B1-204ENST00000414963 C10orf95Q9H7T3 257 aa5.78□□□□□ -1.48
SF3B1-204ENST00000414963 KRTAP10-7P60409 375 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-204ENST00000414963 PRO0628Q9UI54 55 aa5.68□□□□□ -1.5
SF3B1-204ENST00000414963 KRTAP10-12P60413 245 aa5.67□□□□□ -1.5
SF3B1-204ENST00000414963 ROMO1P60602 79 aa5.67□□□□□ -1.5
SF3B1-204ENST00000414963 TNP1P09430 55 aa5.65□□□□□ -1.5
SF3B1-204ENST00000414963 KRTAP25-1Q3LHN0 102 aa5.62□□□□□ -1.51
SF3B1-204ENST00000414963 PMAIP1Q13794 54 aa5.59□□□□□ -1.51
SF3B1-204ENST00000414963 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-204ENST00000414963 KRTAP4-8A0A0G2JLE6 195 aa5.51□□□□□ -1.53
SF3B1-204ENST00000414963 KRTAP4-8Q9BYQ9 185 aa5.51□□□□□ -1.53
SF3B1-204ENST00000414963 MACF1Q9UPN3 7388 aaKnown RBP5.49□□□□□ -1.53
SF3B1-204ENST00000414963 KRTAP23-1A1A580 65 aa5.48□□□□□ -1.53
SF3B1-204ENST00000414963 LCE3AQ5TA76 89 aa5.44□□□□□ -1.54
SF3B1-204ENST00000414963 KRTAP8-1Q8IUC2 63 aa5.44□□□□□ -1.54
SF3B1-204ENST00000414963 KMT2DO14686 5537 aa5.4□□□□□ -1.54
SF3B1-204ENST00000414963 KRTAP6-3Q3LI67 103 aa5.38□□□□□ -1.55
SF3B1-204ENST00000414963 PP632Q6XCG6 107 aa5.37□□□□□ -1.55
SF3B1-204ENST00000414963 KRTAP5-9P26371 169 aa5.36□□□□□ -1.55
SF3B1-204ENST00000414963 SYNE2Q8WXH0 6885 aaKnown RBP5.34□□□□□ -1.55
SF3B1-204ENST00000414963 KRTAP19-7Q3SYF9 63 aa5.32□□□□□ -1.56
SF3B1-204ENST00000414963 KRTAP19-5Q3LI72 72 aa5.31□□□□□ -1.56
SF3B1-204ENST00000414963 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
SF3B1-204ENST00000414963 KTN1-AS1Q86SY8 53 aa5.28□□□□□ -1.56
SF3B1-204ENST00000414963 SPRR2FQ96RM1 72 aa5.27□□□□□ -1.57
SF3B1-204ENST00000414963 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
SF3B1-204ENST00000414963 MT1EP04732 61 aa5.24□□□□□ -1.57
SF3B1-204ENST00000414963 PRAC1Q96KF2 57 aa5.23□□□□□ -1.57
SF3B1-204ENST00000414963 LCE1AQ5T7P2 110 aa5.12□□□□□ -1.59
SF3B1-204ENST00000414963 MUC12Q9UKN1 5478 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms