RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 PRO2289Q9P1D8 64 aa3.74□□□□□ -1.81
TM9SF4-202ENST00000398022 SPINK6Q6UWN8 80 aa3.74□□□□□ -1.81
TM9SF4-202ENST00000398022 KRTAP4-5Q9BYR2 181 aa3.74□□□□□ -1.81
TM9SF4-202ENST00000398022 TNXBP22105 4242 aa3.73□□□□□ -1.81
TM9SF4-202ENST00000398022 PSORS1C2Q9UIG4 136 aa3.72□□□□□ -1.81
TM9SF4-202ENST00000398022 UBR4Q5T4S7 5183 aa3.71□□□□□ -1.82
TM9SF4-202ENST00000398022 Q6ZRN7 208 aaPredicted RBP3.71□□□□□ -1.82
TM9SF4-202ENST00000398022 SPINK1P00995 79 aa3.7□□□□□ -1.82
TM9SF4-202ENST00000398022 TYMSOSQ8TAI1 123 aa3.7□□□□□ -1.82
TM9SF4-202ENST00000398022 SRRM2Q9UQ35 2752 aaKnown RBP3.69□□□□□ -1.82
TM9SF4-202ENST00000398022 R4GN34 69 aa3.69□□□□□ -1.82
TM9SF4-202ENST00000398022 KRTAP3-3Q9BYR6 98 aa3.68□□□□□ -1.82
TM9SF4-202ENST00000398022 KRTAP3-2Q9BYR7 98 aa3.68□□□□□ -1.82
TM9SF4-202ENST00000398022 ANAPC11Q9NYG5 84 aa3.68□□□□□ -1.82
TM9SF4-202ENST00000398022 CRIPTQ9P021 101 aa3.68□□□□□ -1.82
TM9SF4-202ENST00000398022 LRP1Q07954 4544 aaKnown RBP3.67□□□□□ -1.82
TM9SF4-202ENST00000398022 IGKV2D-30A0A075B6S6 120 aa3.64□□□□□ -1.83
TM9SF4-202ENST00000398022 IGKV2-30P06310 120 aa3.64□□□□□ -1.83
TM9SF4-202ENST00000398022 TPRXLQ17RH7 258 aa3.62□□□□□ -1.83
TM9SF4-202ENST00000398022 KRTAP13-3Q3SY46 172 aa3.61□□□□□ -1.83
TM9SF4-202ENST00000398022 SMR3BP02814 79 aaPredicted RBP3.59□□□□□ -1.83
TM9SF4-202ENST00000398022 RNF213Q63HN8 5207 aa3.57□□□□□ -1.84
TM9SF4-202ENST00000398022 H0YAA0 97 aa3.56□□□□□ -1.84
TM9SF4-202ENST00000398022 PLAC4Q8WY50 150 aa3.53□□□□□ -1.84
TM9SF4-202ENST00000398022 KRTAP13-2Q52LG2 175 aa3.53□□□□□ -1.85
TM9SF4-202ENST00000398022 KRTAP10-2P60368 255 aa3.51□□□□□ -1.85
TM9SF4-202ENST00000398022 Q6ZSA8 131 aa3.49□□□□□ -1.85
TM9SF4-202ENST00000398022 LPAP08519 4548 aa3.49□□□□□ -1.85
TM9SF4-202ENST00000398022 Q5VSD8 79 aa3.49□□□□□ -1.85
TM9SF4-202ENST00000398022 INE1O15225 51 aa3.48□□□□□ -1.85
TM9SF4-202ENST00000398022 LRP2P98164 4655 aa3.48□□□□□ -1.85
TM9SF4-202ENST00000398022 MUC2Q02817 5179 aa3.47□□□□□ -1.85
TM9SF4-202ENST00000398022 KRTAP10-1P60331 282 aa3.47□□□□□ -1.85
TM9SF4-202ENST00000398022 KRTAP1-4P0C5Y4 121 aa3.47□□□□□ -1.85
TM9SF4-202ENST00000398022 KRTAP10-4P60372 401 aaPredicted RBP3.47□□□□□ -1.85
TM9SF4-202ENST00000398022 H1FX-AS1Q4G0G2 97 aa3.45□□□□□ -1.86
TM9SF4-202ENST00000398022 RPS29P62273 56 aaKnown RBP3.45□□□□□ -1.86
TM9SF4-202ENST00000398022 C10orf95Q9H7T3 257 aa3.45□□□□□ -1.86
TM9SF4-202ENST00000398022 COX6B2Q6YFQ2 88 aa3.44□□□□□ -1.86
TM9SF4-202ENST00000398022 A0A0D9SG42 100 aa3.42□□□□□ -1.86
TM9SF4-202ENST00000398022 RPL37P61927 97 aaKnown RBP3.41□□□□□ -1.86
TM9SF4-202ENST00000398022 FAT4Q6V0I7 4981 aa3.4□□□□□ -1.87
TM9SF4-202ENST00000398022 KRTAP3-1Q9BYR8 98 aa3.39□□□□□ -1.87
TM9SF4-202ENST00000398022 C9orf92A6NGG3 77 aa3.38□□□□□ -1.87
TM9SF4-202ENST00000398022 MUC17Q685J3 4493 aa3.38□□□□□ -1.87
TM9SF4-202ENST00000398022 LCE2AQ5TA79 106 aaPredicted RBP3.37□□□□□ -1.87
TM9SF4-202ENST00000398022 KRTAP10-8P60410 259 aa3.37□□□□□ -1.87
TM9SF4-202ENST00000398022 LCE2DQ5TA82 110 aaPredicted RBP3.35□□□□□ -1.87
TM9SF4-202ENST00000398022 LCE2CQ5TA81 110 aa3.34□□□□□ -1.87
TM9SF4-202ENST00000398022 XP32Q5T750 250 aa3.33□□□□□ -1.88
TM9SF4-202ENST00000398022 MT1HL1P0DM35 61 aa3.3□□□□□ -1.88
TM9SF4-202ENST00000398022 KRTAP12-2P59991 146 aa3.3□□□□□ -1.88
TM9SF4-202ENST00000398022 PP632Q6XCG6 107 aa3.26□□□□□ -1.89
TM9SF4-202ENST00000398022 S4R3F8 94 aa3.22□□□□□ -1.89
TM9SF4-202ENST00000398022 KRTAP10-6P60371 365 aaPredicted RBP3.17□□□□□ -1.9
TM9SF4-202ENST00000398022 FLGP20930 4061 aaPredicted RBP3.17□□□□□ -1.9
TM9SF4-202ENST00000398022 KRTAP9-2Q9BYQ4 174 aa3.14□□□□□ -1.91
TM9SF4-202ENST00000398022 LCE2BO14633 110 aa3.13□□□□□ -1.91
TM9SF4-202ENST00000398022 KRTAP13-4Q3LI77 160 aa3.13□□□□□ -1.91
TM9SF4-202ENST00000398022 LORP23490 312 aaPredicted RBP3.11□□□□□ -1.91
TM9SF4-202ENST00000398022 M0QZ58 72 aa3.11□□□□□ -1.91
TM9SF4-202ENST00000398022 KRTAP9-6A0A140TA67 174 aa3.06□□□□□ -1.92
TM9SF4-202ENST00000398022 SPRR5A0A1B0GTR4 108 aa3.06□□□□□ -1.92
TM9SF4-202ENST00000398022 M0R2T5 61 aa3.06□□□□□ -1.92
TM9SF4-202ENST00000398022 KRTAP12-1P59990 96 aa3.05□□□□□ -1.92
TM9SF4-202ENST00000398022 KRTAP19-2Q3LHN2 52 aa2.99□□□□□ -1.93
TM9SF4-202ENST00000398022 FSIP2Q5CZC0 6907 aa2.97□□□□□ -1.93
TM9SF4-202ENST00000398022 KRTAP4-1Q9BYQ7 146 aa2.93□□□□□ -1.94
TM9SF4-202ENST00000398022 USH2AO75445 5202 aa2.93□□□□□ -1.94
TM9SF4-202ENST00000398022 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
TM9SF4-202ENST00000398022 CRCT1Q9UGL9 99 aa2.88□□□□□ -1.95
TM9SF4-202ENST00000398022 TNP1P09430 55 aa2.85□□□□□ -1.95
TM9SF4-202ENST00000398022 MT1HP80294 61 aa2.82□□□□□ -1.96
TM9SF4-202ENST00000398022 FCGBPQ9Y6R7 5405 aaPredicted RBP2.81□□□□□ -1.96
TM9SF4-202ENST00000398022 KRTAP2-2Q9BYT5 123 aa2.81□□□□□ -1.96
TM9SF4-202ENST00000398022 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.77□□□□□ -1.97
TM9SF4-202ENST00000398022 MACF1Q9UPN3 7388 aaKnown RBP2.76□□□□□ -1.97
TM9SF4-202ENST00000398022 SYNE2Q8WXH0 6885 aaKnown RBP2.75□□□□□ -1.97
TM9SF4-202ENST00000398022 KRTAP9-7A8MTY7 169 aa2.71□□□□□ -1.98
TM9SF4-202ENST00000398022 LCE5AQ5TCM9 118 aa2.71□□□□□ -1.98
TM9SF4-202ENST00000398022 KRTAP9-8Q9BYQ0 159 aa2.7□□□□□ -1.98
TM9SF4-202ENST00000398022 KRTAP10-10P60014 251 aa2.69□□□□□ -1.98
TM9SF4-202ENST00000398022 MUC12Q9UKN1 5478 aa2.65□□□□□ -1.99
TM9SF4-202ENST00000398022 KRTAP19-4Q3LI73 84 aa2.64□□□□□ -1.99
TM9SF4-202ENST00000398022 SPRR2GQ9BYE4 73 aa2.61□□□□□ -1.99
TM9SF4-202ENST00000398022 KRTAP9-3Q9BYQ3 159 aa2.61□□□□□ -1.99
TM9SF4-202ENST00000398022 KRTAP19-1Q8IUB9 90 aa2.59□□□□□ -1.99
TM9SF4-202ENST00000398022 NEBP20929 6669 aa2.59□□□□□ -1.99
TM9SF4-202ENST00000398022 KRTAP19-6Q3LI70 58 aa2.56□□□□□ -2
TM9SF4-202ENST00000398022 MT1FP04733 61 aa2.55□□□□□ -2
TM9SF4-202ENST00000398022 MT2AP02795 61 aa2.55□□□□□ -2
TM9SF4-202ENST00000398022 LCE3AQ5TA76 89 aa2.54□□□□□ -2
TM9SF4-202ENST00000398022 LCE1AQ5T7P2 110 aa2.52□□□□□ -2.01
TM9SF4-202ENST00000398022 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
TM9SF4-202ENST00000398022 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
TM9SF4-202ENST00000398022 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
TM9SF4-202ENST00000398022 KRTAP8-1Q8IUC2 63 aa2.5□□□□□ -2.01
TM9SF4-202ENST00000398022 KRTAP9-4Q9BYQ2 154 aa2.48□□□□□ -2.01
TM9SF4-202ENST00000398022 KRTAP19-8Q3LI54 63 aa2.47□□□□□ -2.01
TM9SF4-202ENST00000398022 KRTAP10-12P60413 245 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms