RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 Q1T7F1 81 aa6.83□□□□□ -1.32
VAPB-202ENST00000395802 S4R3F8 94 aa6.8□□□□□ -1.32
VAPB-202ENST00000395802 PRO0628Q9UI54 55 aa6.8□□□□□ -1.32
VAPB-202ENST00000395802 SPTSSBQ8NFR3 76 aa6.79□□□□□ -1.32
VAPB-202ENST00000395802 KRTAP19-2Q3LHN2 52 aa6.78□□□□□ -1.32
VAPB-202ENST00000395802 LCA10Q71F78 164 aa6.73□□□□□ -1.33
VAPB-202ENST00000395802 FLGP20930 4061 aaPredicted RBP6.73□□□□□ -1.33
VAPB-202ENST00000395802 V9GYY9 64 aa6.72□□□□□ -1.33
VAPB-202ENST00000395802 CSAG1Q6PB30 78 aa6.71□□□□□ -1.34
VAPB-202ENST00000395802 LCE2CQ5TA81 110 aa6.7□□□□□ -1.34
VAPB-202ENST00000395802 LINC01558Q9Y6Z2 57 aa6.69□□□□□ -1.34
VAPB-202ENST00000395802 BRK1Q8WUW1 75 aa6.68□□□□□ -1.34
VAPB-202ENST00000395802 FAT4Q6V0I7 4981 aa6.67□□□□□ -1.34
VAPB-202ENST00000395802 KRTAP3-3Q9BYR6 98 aa6.65□□□□□ -1.34
VAPB-202ENST00000395802 PSPHP1O15172 72 aa6.64□□□□□ -1.35
VAPB-202ENST00000395802 M0R2T5 61 aa6.64□□□□□ -1.35
VAPB-202ENST00000395802 LCE2DQ5TA82 110 aaPredicted RBP6.63□□□□□ -1.35
VAPB-202ENST00000395802 PRR15LQ9BU68 103 aa6.63□□□□□ -1.35
VAPB-202ENST00000395802 MT1HP80294 61 aa6.62□□□□□ -1.35
VAPB-202ENST00000395802 Q5VV11 94 aa6.62□□□□□ -1.35
VAPB-202ENST00000395802 SEC61GP60059 68 aa6.57□□□□□ -1.36
VAPB-202ENST00000395802 A0A1B0GU69 56 aa6.56□□□□□ -1.36
VAPB-202ENST00000395802 H0YAA0 97 aa6.53□□□□□ -1.36
VAPB-202ENST00000395802 LCE2AQ5TA79 106 aaPredicted RBP6.46□□□□□ -1.37
VAPB-202ENST00000395802 ADM2Q7Z4H4 148 aa6.46□□□□□ -1.38
VAPB-202ENST00000395802 A8MU10 97 aa6.43□□□□□ -1.38
VAPB-202ENST00000395802 A6NED7 52 aa6.43□□□□□ -1.38
VAPB-202ENST00000395802 KRTAP10-6P60371 365 aaPredicted RBP6.41□□□□□ -1.38
VAPB-202ENST00000395802 KRTAP3-2Q9BYR7 98 aa6.41□□□□□ -1.38
VAPB-202ENST00000395802 CDC42SE1Q9NRR8 79 aa6.41□□□□□ -1.38
VAPB-202ENST00000395802 UQCR11O14957 56 aa6.37□□□□□ -1.39
VAPB-202ENST00000395802 LORP23490 312 aaPredicted RBP6.37□□□□□ -1.39
VAPB-202ENST00000395802 A0A1B0GU33 70 aa6.36□□□□□ -1.39
VAPB-202ENST00000395802 P0C880 135 aa6.36□□□□□ -1.39
VAPB-202ENST00000395802 CRIPTQ9P021 101 aa6.35□□□□□ -1.39
VAPB-202ENST00000395802 PMAIP1Q13794 54 aa6.34□□□□□ -1.39
VAPB-202ENST00000395802 KRTAP9-8Q9BYQ0 159 aa6.34□□□□□ -1.4
VAPB-202ENST00000395802 MT2AP02795 61 aa6.31□□□□□ -1.4
VAPB-202ENST00000395802 KRTAP10-10P60014 251 aa6.31□□□□□ -1.4
VAPB-202ENST00000395802 SPATA8Q6RVD6 105 aa6.31□□□□□ -1.4
VAPB-202ENST00000395802 MIR22HGQ0VDD5 57 aa6.3□□□□□ -1.4
VAPB-202ENST00000395802 A6NN06 94 aa6.29□□□□□ -1.4
VAPB-202ENST00000395802 M0QZ58 72 aa6.29□□□□□ -1.4
VAPB-202ENST00000395802 R4GN34 69 aa6.29□□□□□ -1.4
VAPB-202ENST00000395802 MT1FP04733 61 aa6.25□□□□□ -1.41
VAPB-202ENST00000395802 KRTAP13-4Q3LI77 160 aa6.25□□□□□ -1.41
VAPB-202ENST00000395802 KTN1-AS1Q86SY8 53 aa6.23□□□□□ -1.41
VAPB-202ENST00000395802 LOC100996750A0A140TA64 210 aa6.18□□□□□ -1.42
VAPB-202ENST00000395802 KRTAP4-6Q9BYQ5 205 aa6.18□□□□□ -1.42
VAPB-202ENST00000395802 SPRR2GQ9BYE4 73 aa6.16□□□□□ -1.42
VAPB-202ENST00000395802 KRTAP9-3Q9BYQ3 159 aa6.12□□□□□ -1.43
VAPB-202ENST00000395802 LINC01554Q52M75 96 aa6.11□□□□□ -1.43
VAPB-202ENST00000395802 A0A0D9SG42 100 aa6.1□□□□□ -1.43
VAPB-202ENST00000395802 KRTAP19-1Q8IUB9 90 aa6.09□□□□□ -1.43
VAPB-202ENST00000395802 K7ERS5 55 aa6.03□□□□□ -1.44
VAPB-202ENST00000395802 KRTAP12-1P59990 96 aa6.01□□□□□ -1.45
VAPB-202ENST00000395802 KRTAP19-8Q3LI54 63 aa6□□□□□ -1.45
VAPB-202ENST00000395802 KRTAP12-2P59991 146 aa5.99□□□□□ -1.45
VAPB-202ENST00000395802 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
VAPB-202ENST00000395802 SPINT4Q6UDR6 99 aa5.98□□□□□ -1.45
VAPB-202ENST00000395802 LCE2BO14633 110 aa5.95□□□□□ -1.46
VAPB-202ENST00000395802 H3BS24 57 aa5.92□□□□□ -1.46
VAPB-202ENST00000395802 PRAC1Q96KF2 57 aa5.9□□□□□ -1.47
VAPB-202ENST00000395802 MT1BP07438 61 aa5.88□□□□□ -1.47
VAPB-202ENST00000395802 CAMK2N1Q7Z7J9 78 aa5.88□□□□□ -1.47
VAPB-202ENST00000395802 A0A0A0MQY5 61 aa5.88□□□□□ -1.47
VAPB-202ENST00000395802 USH2AO75445 5202 aa5.84□□□□□ -1.47
VAPB-202ENST00000395802 FSIP2Q5CZC0 6907 aa5.82□□□□□ -1.48
VAPB-202ENST00000395802 KRTAP9-2Q9BYQ4 174 aa5.79□□□□□ -1.48
VAPB-202ENST00000395802 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
VAPB-202ENST00000395802 ROMO1P60602 79 aa5.77□□□□□ -1.49
VAPB-202ENST00000395802 KRTAP19-6Q3LI70 58 aa5.68□□□□□ -1.5
VAPB-202ENST00000395802 C10orf95Q9H7T3 257 aa5.68□□□□□ -1.5
VAPB-202ENST00000395802 MT1XP80297 61 aa5.67□□□□□ -1.5
VAPB-202ENST00000395802 SSPOA2VEC9 5147 aa5.67□□□□□ -1.5
VAPB-202ENST00000395802 KRTAP10-5P60370 271 aa5.67□□□□□ -1.5
VAPB-202ENST00000395802 KRTAP25-1Q3LHN0 102 aa5.67□□□□□ -1.5
VAPB-202ENST00000395802 TNP1P09430 55 aa5.58□□□□□ -1.52
VAPB-202ENST00000395802 CRCT1Q9UGL9 99 aa5.58□□□□□ -1.52
VAPB-202ENST00000395802 FCGBPQ9Y6R7 5405 aaPredicted RBP5.47□□□□□ -1.53
VAPB-202ENST00000395802 KRTAP10-7P60409 375 aaPredicted RBP5.42□□□□□ -1.54
VAPB-202ENST00000395802 KRTAP10-12P60413 245 aa5.41□□□□□ -1.54
VAPB-202ENST00000395802 KRTAP9-6A0A140TA67 174 aa5.41□□□□□ -1.54
VAPB-202ENST00000395802 KRTAP23-1A1A580 65 aa5.39□□□□□ -1.55
VAPB-202ENST00000395802 PP632Q6XCG6 107 aa5.37□□□□□ -1.55
VAPB-202ENST00000395802 MACF1Q9UPN3 7388 aaKnown RBP5.35□□□□□ -1.55
VAPB-202ENST00000395802 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
VAPB-202ENST00000395802 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
VAPB-202ENST00000395802 KMT2DO14686 5537 aa5.25□□□□□ -1.57
VAPB-202ENST00000395802 SYNE2Q8WXH0 6885 aaKnown RBP5.25□□□□□ -1.57
VAPB-202ENST00000395802 KRTAP4-8A0A0G2JLE6 195 aa5.23□□□□□ -1.57
VAPB-202ENST00000395802 KRTAP8-1Q8IUC2 63 aa5.22□□□□□ -1.57
VAPB-202ENST00000395802 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.2□□□□□ -1.58
VAPB-202ENST00000395802 KRTAP15-1Q3LI76 137 aa5.18□□□□□ -1.58
VAPB-202ENST00000395802 KRTAP12-3P60328 96 aa5.11□□□□□ -1.59
VAPB-202ENST00000395802 KRTAP19-5Q3LI72 72 aa5.09□□□□□ -1.59
VAPB-202ENST00000395802 KRTAP19-7Q3SYF9 63 aa5.06□□□□□ -1.6
VAPB-202ENST00000395802 KRTAP5-9P26371 169 aa5.04□□□□□ -1.6
VAPB-202ENST00000395802 SPRR2FQ96RM1 72 aa5.04□□□□□ -1.6
VAPB-202ENST00000395802 KRTAP6-3Q3LI67 103 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms