RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 NISCHQ9Y2I1 1504 aa31.58■■■□□ 2.65
VAPB-202ENST00000395802 CCDC180Q9P1Z9 1646 aa27.75■■■□□ 2.03
VAPB-202ENST00000395802 ZCCHC6Q5VYS8 1495 aaKnown RBP26.46■■□□□ 1.83
VAPB-202ENST00000395802 ABCC9O60706 1549 aa26.41■■□□□ 1.82
VAPB-202ENST00000395802 DCAF1Q9Y4B6 1507 aa26.2■■□□□ 1.79
VAPB-202ENST00000395802 DCAF8L2P0C7V8 631 aa26.16■■□□□ 1.78
VAPB-202ENST00000395802 MYO15BQ96JP2 1530 aa26.06■■□□□ 1.76
VAPB-202ENST00000395802 NACADO15069 1562 aa25.95■■□□□ 1.74
VAPB-202ENST00000395802 RB1CC1Q8TDY2 1594 aa25.79■■□□□ 1.72
VAPB-202ENST00000395802 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
VAPB-202ENST00000395802 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
VAPB-202ENST00000395802 UNC13AQ9UPW8 1703 aa25.09■■□□□ 1.61
VAPB-202ENST00000395802 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
VAPB-202ENST00000395802 PABPN1Q86U42 306 aaKnown RBP eCLIP24.82■■□□□ 1.56
VAPB-202ENST00000395802 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
VAPB-202ENST00000395802 CECR2Q9BXF3 1484 aa24.46■■□□□ 1.51
VAPB-202ENST00000395802 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
VAPB-202ENST00000395802 SUPT5HO00267 1087 aaKnown RBP24.33■■□□□ 1.49
VAPB-202ENST00000395802 SMARCA4P51532 1647 aa24.33■■□□□ 1.48
VAPB-202ENST00000395802 MROH2BQ7Z745 1585 aa24.3■■□□□ 1.48
VAPB-202ENST00000395802 EIF4G1Q04637 1599 aaKnown RBP24.22■■□□□ 1.47
VAPB-202ENST00000395802 PEG3Q9GZU2 1588 aa24.1■■□□□ 1.45
VAPB-202ENST00000395802 SMARCA2P51531 1590 aa24.08■■□□□ 1.45
VAPB-202ENST00000395802 WIZO95785 1651 aa24.07■■□□□ 1.44
VAPB-202ENST00000395802 ATAD2BQ9ULI0 1458 aa24.02■■□□□ 1.44
VAPB-202ENST00000395802 CC2D2AQ9P2K1 1620 aa23.93■■□□□ 1.42
VAPB-202ENST00000395802 NCAPD3P42695 1498 aa23.93■■□□□ 1.42
VAPB-202ENST00000395802 TOP2AP11388 1531 aaKnown RBP23.91■■□□□ 1.42
VAPB-202ENST00000395802 BAZ1BQ9UIG0 1483 aaKnown RBP23.9■■□□□ 1.42
VAPB-202ENST00000395802 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
VAPB-202ENST00000395802 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
VAPB-202ENST00000395802 DNAJC5BQ9UF47 199 aa23.5■■□□□ 1.35
VAPB-202ENST00000395802 CADPSQ9ULU8 1353 aa23.29■■□□□ 1.32
VAPB-202ENST00000395802 CFTRP13569 1480 aa23.28■■□□□ 1.32
VAPB-202ENST00000395802 LAMC3Q9Y6N6 1575 aa23.18■■□□□ 1.3
VAPB-202ENST00000395802 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
VAPB-202ENST00000395802 PRDM2Q13029 1718 aa23.12■■□□□ 1.29
VAPB-202ENST00000395802 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
VAPB-202ENST00000395802 NESP48681 1621 aa23.04■■□□□ 1.28
VAPB-202ENST00000395802 TRIM41Q8WV44 630 aa23.01■■□□□ 1.27
VAPB-202ENST00000395802 FANCD2Q9BXW9 1451 aa22.99■■□□□ 1.27
VAPB-202ENST00000395802 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
VAPB-202ENST00000395802 ABCC8Q09428 1581 aa22.95■■□□□ 1.26
VAPB-202ENST00000395802 CEP164Q9UPV0 1460 aa22.91■■□□□ 1.26
VAPB-202ENST00000395802 TOP2BQ02880 1626 aa22.8■■□□□ 1.24
VAPB-202ENST00000395802 KIF21AQ7Z4S6 1674 aa22.79■■□□□ 1.24
VAPB-202ENST00000395802 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
VAPB-202ENST00000395802 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
VAPB-202ENST00000395802 BIVM-ERCC5R4GMW8 1640 aa22.77■■□□□ 1.24
VAPB-202ENST00000395802 CUX1P39880 1505 aa22.76■■□□□ 1.23
VAPB-202ENST00000395802 DNMBPQ6XZF7 1577 aa22.74■■□□□ 1.23
VAPB-202ENST00000395802 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
VAPB-202ENST00000395802 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
VAPB-202ENST00000395802 URB2Q14146 1524 aaKnown RBP22.66■■□□□ 1.22
VAPB-202ENST00000395802 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
VAPB-202ENST00000395802 WDR62O43379 1518 aa22.59■■□□□ 1.21
VAPB-202ENST00000395802 EEA1Q15075 1411 aa22.57■■□□□ 1.2
VAPB-202ENST00000395802 POLA1P09884 1462 aaPredicted RBP22.55■■□□□ 1.2
VAPB-202ENST00000395802 THOC2Q8NI27 1593 aaKnown RBP22.53■■□□□ 1.2
VAPB-202ENST00000395802 SOGA1O94964 1423 aa22.51■■□□□ 1.19
VAPB-202ENST00000395802 KIF27Q86VH2 1401 aa22.47■■□□□ 1.19
VAPB-202ENST00000395802 ABCA10Q8WWZ4 1543 aa22.45■■□□□ 1.18
VAPB-202ENST00000395802 FAM9AQ8IZU1 332 aaPredicted RBP22.43■■□□□ 1.18
VAPB-202ENST00000395802 RAD54L2Q9Y4B4 1467 aa22.42■■□□□ 1.18
VAPB-202ENST00000395802 CUX2O14529 1486 aa22.41■■□□□ 1.18
VAPB-202ENST00000395802 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
VAPB-202ENST00000395802 CSRNP3Q8WYN3 585 aa22.39■■□□□ 1.17
VAPB-202ENST00000395802 RUSC2Q8N2Y8 1516 aa22.35■■□□□ 1.17
VAPB-202ENST00000395802 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
VAPB-202ENST00000395802 WDR97A6NE52 1622 aa22.32■■□□□ 1.16
VAPB-202ENST00000395802 GAPVD1Q14C86 1478 aa22.26■■□□□ 1.15
VAPB-202ENST00000395802 TDRD9Q8NDG6 1382 aaKnown RBP22.26■■□□□ 1.15
VAPB-202ENST00000395802 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
VAPB-202ENST00000395802 IGF1RP08069 1367 aa22.23■■□□□ 1.15
VAPB-202ENST00000395802 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
VAPB-202ENST00000395802 KIF21BO75037 1637 aa22.18■■□□□ 1.14
VAPB-202ENST00000395802 AQRO60306 1485 aaKnown RBP eCLIP22.16■■□□□ 1.141e-6■■■■□ 26.3
VAPB-202ENST00000395802 PRXQ9BXM0 1461 aa22.16■■□□□ 1.14
VAPB-202ENST00000395802 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
VAPB-202ENST00000395802 GOLGA3Q08378 1498 aa22.16■■□□□ 1.14
VAPB-202ENST00000395802 GRIN2BQ13224 1484 aa22.16■■□□□ 1.14
VAPB-202ENST00000395802 LOC105371045A0A1W2PR82 267 aa22.15■■□□□ 1.14
VAPB-202ENST00000395802 CUL7Q14999 1698 aa22.14■■□□□ 1.14
VAPB-202ENST00000395802 CARMIL1Q5VZK9 1371 aa22.14■■□□□ 1.14
VAPB-202ENST00000395802 EIF4G3O43432 1585 aaKnown RBP22.12■■□□□ 1.13
VAPB-202ENST00000395802 RAPGEF2Q9Y4G8 1499 aa22.1■■□□□ 1.13
VAPB-202ENST00000395802 PBRM1Q86U86 1689 aa22.1■■□□□ 1.13
VAPB-202ENST00000395802 UBTFP17480 764 aaKnown RBP22.08■■□□□ 1.12
VAPB-202ENST00000395802 EHMT2Q96KQ7 1210 aa22.06■■□□□ 1.12
VAPB-202ENST00000395802 FHAD1B1AJZ9 1412 aa22.04■■□□□ 1.12
VAPB-202ENST00000395802 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
VAPB-202ENST00000395802 TNIKQ9UKE5 1360 aa22.03■■□□□ 1.12
VAPB-202ENST00000395802 ADAMTS12P58397 1594 aa21.98■■□□□ 1.11
VAPB-202ENST00000395802 SNAPC4Q5SXM2 1469 aa21.98■■□□□ 1.11
VAPB-202ENST00000395802 SYNJ2O15056 1496 aa21.93■■□□□ 1.1
VAPB-202ENST00000395802 CHMP7Q8WUX9 453 aaPredicted RBP21.91■■□□□ 1.1
VAPB-202ENST00000395802 GRIN2AQ12879 1464 aa21.86■■□□□ 1.09
VAPB-202ENST00000395802 CEP162Q5TB80 1403 aa21.83■■□□□ 1.09
VAPB-202ENST00000395802 FBLN2P98095 1184 aa21.83■■□□□ 1.09
VAPB-202ENST00000395802 CTTNBP2Q8WZ74 1663 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms