RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 COX6B2Q6YFQ2 88 aa7.8□□□□□ -1.16
SCAF11-204ENST00000395454 PSPHP1O15172 72 aa7.79□□□□□ -1.16
SCAF11-204ENST00000395454 KRTAP4-1Q9BYQ7 146 aa7.79□□□□□ -1.16
SCAF11-204ENST00000395454 PRR15LQ9BU68 103 aa7.76□□□□□ -1.17
SCAF11-204ENST00000395454 KRTAP3-3Q9BYR6 98 aa7.69□□□□□ -1.18
SCAF11-204ENST00000395454 KRTAP3-2Q9BYR7 98 aa7.69□□□□□ -1.18
SCAF11-204ENST00000395454 SPTSSBQ8NFR3 76 aa7.68□□□□□ -1.18
SCAF11-204ENST00000395454 PRO0628Q9UI54 55 aa7.62□□□□□ -1.19
SCAF11-204ENST00000395454 FAT4Q6V0I7 4981 aa7.62□□□□□ -1.19
SCAF11-204ENST00000395454 BRK1Q8WUW1 75 aa7.62□□□□□ -1.19
SCAF11-204ENST00000395454 A0A1B0GU69 56 aa7.61□□□□□ -1.19
SCAF11-204ENST00000395454 A6NED7 52 aa7.55□□□□□ -1.2
SCAF11-204ENST00000395454 RBM12B-AS1Q9P1G2 102 aa7.54□□□□□ -1.2
SCAF11-204ENST00000395454 H1FX-AS1Q4G0G2 97 aa7.54□□□□□ -1.2
SCAF11-204ENST00000395454 KRTAP19-2Q3LHN2 52 aa7.53□□□□□ -1.2
SCAF11-204ENST00000395454 LCA10Q71F78 164 aa7.52□□□□□ -1.21
SCAF11-204ENST00000395454 CDC42SE1Q9NRR8 79 aa7.51□□□□□ -1.21
SCAF11-204ENST00000395454 SVIPQ8NHG7 77 aa7.5□□□□□ -1.21
SCAF11-204ENST00000395454 S4R3F8 94 aa7.5□□□□□ -1.21
SCAF11-204ENST00000395454 SEC61GP60059 68 aa7.48□□□□□ -1.21
SCAF11-204ENST00000395454 LCE2CQ5TA81 110 aa7.48□□□□□ -1.21
SCAF11-204ENST00000395454 A8MU10 97 aa7.47□□□□□ -1.21
SCAF11-204ENST00000395454 FLGP20930 4061 aaPredicted RBP7.45□□□□□ -1.22
SCAF11-204ENST00000395454 UQCR11O14957 56 aa7.44□□□□□ -1.22
SCAF11-204ENST00000395454 SPATA8Q6RVD6 105 aa7.42□□□□□ -1.22
SCAF11-204ENST00000395454 MT1HP80294 61 aa7.38□□□□□ -1.23
SCAF11-204ENST00000395454 MIR22HGQ0VDD5 57 aa7.36□□□□□ -1.23
SCAF11-204ENST00000395454 KRTAP10-6P60371 365 aaPredicted RBP7.34□□□□□ -1.23
SCAF11-204ENST00000395454 LCE2AQ5TA79 106 aaPredicted RBP7.34□□□□□ -1.23
SCAF11-204ENST00000395454 A0A1B0GU33 70 aa7.33□□□□□ -1.24
SCAF11-204ENST00000395454 M0R2T5 61 aa7.33□□□□□ -1.24
SCAF11-204ENST00000395454 CSAG1Q6PB30 78 aa7.32□□□□□ -1.24
SCAF11-204ENST00000395454 H0YAA0 97 aa7.29□□□□□ -1.24
SCAF11-204ENST00000395454 A6NN06 94 aa7.23□□□□□ -1.25
SCAF11-204ENST00000395454 PMAIP1Q13794 54 aa7.21□□□□□ -1.25
SCAF11-204ENST00000395454 P0C880 135 aa7.21□□□□□ -1.26
SCAF11-204ENST00000395454 ADM2Q7Z4H4 148 aa7.19□□□□□ -1.26
SCAF11-204ENST00000395454 KRTAP13-4Q3LI77 160 aa7.15□□□□□ -1.27
SCAF11-204ENST00000395454 LORP23490 312 aaPredicted RBP7.13□□□□□ -1.27
SCAF11-204ENST00000395454 M0QZ58 72 aa7.07□□□□□ -1.28
SCAF11-204ENST00000395454 KRTAP9-8Q9BYQ0 159 aa7.03□□□□□ -1.28
SCAF11-204ENST00000395454 KTN1-AS1Q86SY8 53 aa7.02□□□□□ -1.29
SCAF11-204ENST00000395454 MT2AP02795 61 aa6.99□□□□□ -1.29
SCAF11-204ENST00000395454 K7ERS5 55 aa6.96□□□□□ -1.3
SCAF11-204ENST00000395454 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
SCAF11-204ENST00000395454 KRTAP4-6Q9BYQ5 205 aa6.95□□□□□ -1.3
SCAF11-204ENST00000395454 MT1FP04733 61 aa6.95□□□□□ -1.3
SCAF11-204ENST00000395454 KRTAP10-10P60014 251 aa6.95□□□□□ -1.3
SCAF11-204ENST00000395454 A0A0D9SG42 100 aa6.93□□□□□ -1.3
SCAF11-204ENST00000395454 R4GN34 69 aa6.91□□□□□ -1.3
SCAF11-204ENST00000395454 KRTAP12-1P59990 96 aa6.89□□□□□ -1.31
SCAF11-204ENST00000395454 KRTAP12-2P59991 146 aa6.87□□□□□ -1.31
SCAF11-204ENST00000395454 CRIPTQ9P021 101 aa6.85□□□□□ -1.31
SCAF11-204ENST00000395454 KRTAP9-3Q9BYQ3 159 aa6.8□□□□□ -1.32
SCAF11-204ENST00000395454 FSIP2Q5CZC0 6907 aa6.77□□□□□ -1.33
SCAF11-204ENST00000395454 KRTAP9-2Q9BYQ4 174 aa6.76□□□□□ -1.33
SCAF11-204ENST00000395454 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
SCAF11-204ENST00000395454 ROMO1P60602 79 aa6.75□□□□□ -1.33
SCAF11-204ENST00000395454 LINC01554Q52M75 96 aa6.74□□□□□ -1.33
SCAF11-204ENST00000395454 PRAC1Q96KF2 57 aa6.73□□□□□ -1.33
SCAF11-204ENST00000395454 SPRR2GQ9BYE4 73 aa6.68□□□□□ -1.34
SCAF11-204ENST00000395454 LCE2BO14633 110 aa6.68□□□□□ -1.34
SCAF11-204ENST00000395454 KRTAP19-1Q8IUB9 90 aa6.67□□□□□ -1.34
SCAF11-204ENST00000395454 USH2AO75445 5202 aa6.66□□□□□ -1.34
SCAF11-204ENST00000395454 KRTAP25-1Q3LHN0 102 aa6.58□□□□□ -1.36
SCAF11-204ENST00000395454 KRTAP19-8Q3LI54 63 aa6.52□□□□□ -1.37
SCAF11-204ENST00000395454 SSPOA2VEC9 5147 aa6.51□□□□□ -1.37
SCAF11-204ENST00000395454 C10orf95Q9H7T3 257 aa6.5□□□□□ -1.37
SCAF11-204ENST00000395454 MT1BP07438 61 aa6.48□□□□□ -1.37
SCAF11-204ENST00000395454 CAMK2N1Q7Z7J9 78 aa6.47□□□□□ -1.37
SCAF11-204ENST00000395454 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
SCAF11-204ENST00000395454 PLAC4Q8WY50 150 aa6.39□□□□□ -1.39
SCAF11-204ENST00000395454 KRTAP9-6A0A140TA67 174 aa6.37□□□□□ -1.39
SCAF11-204ENST00000395454 KRTAP19-6Q3LI70 58 aa6.35□□□□□ -1.39
SCAF11-204ENST00000395454 FCGBPQ9Y6R7 5405 aaPredicted RBP6.28□□□□□ -1.4
SCAF11-204ENST00000395454 TNP1P09430 55 aa6.23□□□□□ -1.41
SCAF11-204ENST00000395454 KRTAP10-5P60370 271 aa6.23□□□□□ -1.41
SCAF11-204ENST00000395454 PP632Q6XCG6 107 aa6.21□□□□□ -1.41
SCAF11-204ENST00000395454 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
SCAF11-204ENST00000395454 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
SCAF11-204ENST00000395454 MT1XP80297 61 aa6.19□□□□□ -1.42
SCAF11-204ENST00000395454 MACF1Q9UPN3 7388 aaKnown RBP6.11□□□□□ -1.43
SCAF11-204ENST00000395454 SYNE2Q8WXH0 6885 aaKnown RBP5.99□□□□□ -1.45
SCAF11-204ENST00000395454 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.99□□□□□ -1.45
SCAF11-204ENST00000395454 KMT2DO14686 5537 aa5.98□□□□□ -1.45
SCAF11-204ENST00000395454 KRTAP10-7P60409 375 aaPredicted RBP5.94□□□□□ -1.46
SCAF11-204ENST00000395454 LCE3AQ5TA76 89 aa5.94□□□□□ -1.46
SCAF11-204ENST00000395454 KRTAP10-12P60413 245 aa5.91□□□□□ -1.46
SCAF11-204ENST00000395454 KRTAP8-1Q8IUC2 63 aa5.9□□□□□ -1.46
SCAF11-204ENST00000395454 KRTAP15-1Q3LI76 137 aa5.89□□□□□ -1.47
SCAF11-204ENST00000395454 KRTAP4-8Q9BYQ9 185 aa5.89□□□□□ -1.47
SCAF11-204ENST00000395454 KRTAP4-8A0A0G2JLE6 195 aa5.82□□□□□ -1.48
SCAF11-204ENST00000395454 KRTAP9-7A8MTY7 169 aa5.79□□□□□ -1.48
SCAF11-204ENST00000395454 KRTAP12-3P60328 96 aa5.72□□□□□ -1.49
SCAF11-204ENST00000395454 KRTAP6-3Q3LI67 103 aa5.72□□□□□ -1.49
SCAF11-204ENST00000395454 MUC12Q9UKN1 5478 aa5.69□□□□□ -1.5
SCAF11-204ENST00000395454 SPRR5A0A1B0GTR4 108 aa5.66□□□□□ -1.5
SCAF11-204ENST00000395454 KRTAP5-9P26371 169 aa5.66□□□□□ -1.5
SCAF11-204ENST00000395454 SPRR2FQ96RM1 72 aa5.65□□□□□ -1.51
SCAF11-204ENST00000395454 KRTAP5-3Q6L8H2 238 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms