RNA–Protein interactions for RNA: ENST00000381140.8

GTF3A-201, Transcript of general transcription factor IIIA, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-201ENST00000381140 TMEM258P61165 79 aa9.55□□□□□ -0.88
GTF3A-201ENST00000381140 LOC100996750A0A140TA64 210 aa9.51□□□□□ -0.89
GTF3A-201ENST00000381140 C4orf26Q17RF5 130 aa9.51□□□□□ -0.89
GTF3A-201ENST00000381140 KRTAP4-6Q9BYQ5 205 aa9.51□□□□□ -0.89
GTF3A-201ENST00000381140 ATP5EP56381 51 aaPredicted RBP9.5□□□□□ -0.89
GTF3A-201ENST00000381140 H1FX-AS1Q4G0G2 97 aa9.48□□□□□ -0.89
GTF3A-201ENST00000381140 DMAC1Q96GE9 116 aa9.44□□□□□ -0.9
GTF3A-201ENST00000381140 KRTAP9-8Q9BYQ0 159 aa9.42□□□□□ -0.9
GTF3A-201ENST00000381140 A8MUN3 132 aa9.41□□□□□ -0.9
GTF3A-201ENST00000381140 KRTAP3-1Q9BYR8 98 aa9.38□□□□□ -0.91
GTF3A-201ENST00000381140 MT2AP02795 61 aa9.36□□□□□ -0.91
GTF3A-201ENST00000381140 ACYP2P14621 99 aa9.34□□□□□ -0.91
GTF3A-201ENST00000381140 MT1FP04733 61 aa9.28□□□□□ -0.92
GTF3A-201ENST00000381140 KRTAP10-10P60014 251 aa9.28□□□□□ -0.92
GTF3A-201ENST00000381140 SERP1Q9Y6X1 66 aa9.25□□□□□ -0.93
GTF3A-201ENST00000381140 COA5Q86WW8 74 aa9.24□□□□□ -0.93
GTF3A-201ENST00000381140 S4R3F8 94 aa9.24□□□□□ -0.93
GTF3A-201ENST00000381140 FSIP2Q5CZC0 6907 aa9.19□□□□□ -0.94
GTF3A-201ENST00000381140 KRTAP9-6A0A140TA67 174 aa9.19□□□□□ -0.94
GTF3A-201ENST00000381140 LCA10Q71F78 164 aa9.17□□□□□ -0.94
GTF3A-201ENST00000381140 CHKB-CPT1BH3BT56 60 aa9.16□□□□□ -0.94
GTF3A-201ENST00000381140 RPS28P62857 69 aaKnown RBP9.16□□□□□ -0.94
GTF3A-201ENST00000381140 CRCT1Q9UGL9 99 aa9.14□□□□□ -0.95
GTF3A-201ENST00000381140 CSAG1Q6PB30 78 aa9.12□□□□□ -0.95
GTF3A-201ENST00000381140 KRTAP9-3Q9BYQ3 159 aa9.12□□□□□ -0.95
GTF3A-201ENST00000381140 SPTSSBQ8NFR3 76 aa9.06□□□□□ -0.96
GTF3A-201ENST00000381140 SMIM26A0A096LP01 95 aa8.98□□□□□ -0.97
GTF3A-201ENST00000381140 USH2AO75445 5202 aa8.97□□□□□ -0.97
GTF3A-201ENST00000381140 Q1T7F1 81 aa8.86□□□□□ -0.99
GTF3A-201ENST00000381140 LINC01558Q9Y6Z2 57 aa8.86□□□□□ -0.99
GTF3A-201ENST00000381140 V9GYY9 64 aa8.86□□□□□ -0.99
GTF3A-201ENST00000381140 SSPOA2VEC9 5147 aa8.83□□□□□ -1
GTF3A-201ENST00000381140 H0YAA0 97 aa8.81□□□□□ -1
GTF3A-201ENST00000381140 KRTAP19-1Q8IUB9 90 aa8.78□□□□□ -1
GTF3A-201ENST00000381140 A0A1B0GU69 56 aa8.74□□□□□ -1.01
GTF3A-201ENST00000381140 SEC61GP60059 68 aa8.74□□□□□ -1.01
GTF3A-201ENST00000381140 ADM2Q7Z4H4 148 aa8.74□□□□□ -1.01
GTF3A-201ENST00000381140 KRTAP4-8Q9BYQ9 185 aa8.73□□□□□ -1.01
GTF3A-201ENST00000381140 PRR15LQ9BU68 103 aa8.72□□□□□ -1.01
GTF3A-201ENST00000381140 SPRR2GQ9BYE4 73 aa8.7□□□□□ -1.02
GTF3A-201ENST00000381140 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
GTF3A-201ENST00000381140 PSPHP1O15172 72 aa8.64□□□□□ -1.03
GTF3A-201ENST00000381140 KRTAP19-6Q3LI70 58 aa8.63□□□□□ -1.03
GTF3A-201ENST00000381140 Q5VV11 94 aa8.63□□□□□ -1.03
GTF3A-201ENST00000381140 P0C880 135 aa8.62□□□□□ -1.03
GTF3A-201ENST00000381140 KRTAP19-8Q3LI54 63 aa8.61□□□□□ -1.03
GTF3A-201ENST00000381140 FCGBPQ9Y6R7 5405 aaPredicted RBP8.6□□□□□ -1.03
GTF3A-201ENST00000381140 MT1BP07438 61 aa8.59□□□□□ -1.03
GTF3A-201ENST00000381140 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.55□□□□□ -1.04
GTF3A-201ENST00000381140 A0A1B0GU33 70 aa8.53□□□□□ -1.04
GTF3A-201ENST00000381140 R4GN34 69 aa8.48□□□□□ -1.05
GTF3A-201ENST00000381140 M0QZ58 72 aa8.46□□□□□ -1.06
GTF3A-201ENST00000381140 UQCR11O14957 56 aa8.46□□□□□ -1.06
GTF3A-201ENST00000381140 A6NN06 94 aa8.41□□□□□ -1.06
GTF3A-201ENST00000381140 A6NED7 52 aa8.4□□□□□ -1.06
GTF3A-201ENST00000381140 KRTAP13-4Q3LI77 160 aa8.4□□□□□ -1.06
GTF3A-201ENST00000381140 SPATA8Q6RVD6 105 aa8.36□□□□□ -1.07
GTF3A-201ENST00000381140 LINC01554Q52M75 96 aa8.35□□□□□ -1.07
GTF3A-201ENST00000381140 MIR22HGQ0VDD5 57 aa8.35□□□□□ -1.07
GTF3A-201ENST00000381140 KRTAP4-12Q9BQ66 201 aa8.34□□□□□ -1.07
GTF3A-201ENST00000381140 MACF1Q9UPN3 7388 aaKnown RBP8.32□□□□□ -1.08
GTF3A-201ENST00000381140 KRTAP10-5P60370 271 aa8.32□□□□□ -1.08
GTF3A-201ENST00000381140 LCE3BQ5TA77 95 aa8.32□□□□□ -1.08
GTF3A-201ENST00000381140 KRTAP9-7A8MTY7 169 aa8.31□□□□□ -1.08
GTF3A-201ENST00000381140 PLAC4Q8WY50 150 aa8.31□□□□□ -1.08
GTF3A-201ENST00000381140 CDC42SE1Q9NRR8 79 aa8.26□□□□□ -1.09
GTF3A-201ENST00000381140 A8MU10 97 aa8.22□□□□□ -1.09
GTF3A-201ENST00000381140 A0A0D9SG42 100 aa8.2□□□□□ -1.1
GTF3A-201ENST00000381140 BRK1Q8WUW1 75 aa8.17□□□□□ -1.1
GTF3A-201ENST00000381140 SYNE2Q8WXH0 6885 aaKnown RBP8.17□□□□□ -1.1
GTF3A-201ENST00000381140 PRO2289Q9P1D8 64 aa8.14□□□□□ -1.11
GTF3A-201ENST00000381140 MT1XP80297 61 aa8.13□□□□□ -1.11
GTF3A-201ENST00000381140 KRTAP9-9Q9BYP9 154 aa8.13□□□□□ -1.11
GTF3A-201ENST00000381140 KRTAP9-4Q9BYQ2 154 aa8.13□□□□□ -1.11
GTF3A-201ENST00000381140 KRTAP12-1P59990 96 aa8.1□□□□□ -1.11
GTF3A-201ENST00000381140 KRTAP12-2P59991 146 aa8.04□□□□□ -1.12
GTF3A-201ENST00000381140 KRTAP4-8A0A0G2JLE6 195 aa8.02□□□□□ -1.13
GTF3A-201ENST00000381140 SPINT4Q6UDR6 99 aa8.02□□□□□ -1.13
GTF3A-201ENST00000381140 K7ERS5 55 aa8.01□□□□□ -1.13
GTF3A-201ENST00000381140 KRTAP6-3Q3LI67 103 aa8.01□□□□□ -1.13
GTF3A-201ENST00000381140 PRO0628Q9UI54 55 aa7.94□□□□□ -1.14
GTF3A-201ENST00000381140 CAMK2N1Q7Z7J9 78 aa7.88□□□□□ -1.15
GTF3A-201ENST00000381140 KRTAP10-7P60409 375 aaPredicted RBP7.79□□□□□ -1.16
GTF3A-201ENST00000381140 LCE1DQ5T752 114 aa7.78□□□□□ -1.16
GTF3A-201ENST00000381140 KMT2DO14686 5537 aa7.75□□□□□ -1.17
GTF3A-201ENST00000381140 KRTAP5-9P26371 169 aa7.74□□□□□ -1.17
GTF3A-201ENST00000381140 KRTAP4-7Q9BYR0 210 aa7.74□□□□□ -1.17
GTF3A-201ENST00000381140 KRTAP8-1Q8IUC2 63 aa7.73□□□□□ -1.17
GTF3A-201ENST00000381140 PMAIP1Q13794 54 aa7.71□□□□□ -1.17
GTF3A-201ENST00000381140 KRTAP10-12P60413 245 aa7.7□□□□□ -1.18
GTF3A-201ENST00000381140 NEBP20929 6669 aa7.67□□□□□ -1.18
GTF3A-201ENST00000381140 SPRR2FQ96RM1 72 aa7.67□□□□□ -1.18
GTF3A-201ENST00000381140 C10orf95Q9H7T3 257 aa7.66□□□□□ -1.18
GTF3A-201ENST00000381140 ROMO1P60602 79 aa7.64□□□□□ -1.19
GTF3A-201ENST00000381140 MUC12Q9UKN1 5478 aa7.64□□□□□ -1.19
GTF3A-201ENST00000381140 KRTAP4-9Q9BYQ8 210 aa7.56□□□□□ -1.2
GTF3A-201ENST00000381140 SPRR2EP22531 72 aa7.5□□□□□ -1.21
GTF3A-201ENST00000381140 SPRR2BP35325 72 aa7.5□□□□□ -1.21
GTF3A-201ENST00000381140 SPRR2AP35326 72 aa7.5□□□□□ -1.21
GTF3A-201ENST00000381140 LCE4AQ5TA78 99 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms