RNA–Protein interactions for RNA: ENST00000381140.8

GTF3A-201, Transcript of general transcription factor IIIA, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-201ENST00000381140 NISCHQ9Y2I1 1504 aa46.72■■■■■ 5.07
GTF3A-201ENST00000381140 CCDC180Q9P1Z9 1646 aa41.51■■■■■ 4.24
GTF3A-201ENST00000381140 ABCC9O60706 1549 aa40.53■■■■■ 4.08
GTF3A-201ENST00000381140 DCAF8L2P0C7V8 631 aa39.13■■■■□ 3.85
GTF3A-201ENST00000381140 RB1CC1Q8TDY2 1594 aa39■■■■□ 3.83
GTF3A-201ENST00000381140 NACADO15069 1562 aa38.94■■■■□ 3.82
GTF3A-201ENST00000381140 ZCCHC6Q5VYS8 1495 aaKnown RBP38.94■■■■□ 3.82
GTF3A-201ENST00000381140 MYO15BQ96JP2 1530 aa38.66■■■■□ 3.78
GTF3A-201ENST00000381140 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
GTF3A-201ENST00000381140 UNC13AQ9UPW8 1703 aa38.25■■■■□ 3.71
GTF3A-201ENST00000381140 SCRIBQ14160 1630 aa37.99■■■■□ 3.67
GTF3A-201ENST00000381140 PABPN1Q86U42 306 aaKnown RBP eCLIP37.9■■■■□ 3.66
GTF3A-201ENST00000381140 BICRAQ9NZM4 1560 aa37.8■■■■□ 3.64
GTF3A-201ENST00000381140 SHROOM4Q9ULL8 1493 aa37.3■■■■□ 3.56
GTF3A-201ENST00000381140 DNAJC5BQ9UF47 199 aa37■■■■□ 3.51
GTF3A-201ENST00000381140 EIF4G1Q04637 1599 aaKnown RBP36.8■■■■□ 3.48
GTF3A-201ENST00000381140 CC2D2AQ9P2K1 1620 aa36.66■■■■□ 3.46
GTF3A-201ENST00000381140 CECR2Q9BXF3 1484 aa36.42■■■■□ 3.42
GTF3A-201ENST00000381140 SMARCA4P51532 1647 aa36.28■■■■□ 3.4
GTF3A-201ENST00000381140 BAZ1AQ9NRL2 1556 aaPredicted RBP36.22■■■■□ 3.39
GTF3A-201ENST00000381140 MROH2BQ7Z745 1585 aa36.05■■■■□ 3.36
GTF3A-201ENST00000381140 ATAD2BQ9ULI0 1458 aa35.98■■■■□ 3.35
GTF3A-201ENST00000381140 SMARCA2P51531 1590 aa35.96■■■■□ 3.35
GTF3A-201ENST00000381140 NCAPD3P42695 1498 aa35.89■■■■□ 3.34
GTF3A-201ENST00000381140 PEG3Q9GZU2 1588 aa35.82■■■■□ 3.32
GTF3A-201ENST00000381140 HMGXB3Q12766 1538 aa35.77■■■■□ 3.32
GTF3A-201ENST00000381140 WIZO95785 1651 aa35.74■■■■□ 3.31
GTF3A-201ENST00000381140 BAZ1BQ9UIG0 1483 aaKnown RBP35.74■■■■□ 3.31
GTF3A-201ENST00000381140 RSF1Q96T23 1441 aaPredicted RBP35.64■■■■□ 3.3
GTF3A-201ENST00000381140 TOP2AP11388 1531 aaKnown RBP35.29■■■■□ 3.24
GTF3A-201ENST00000381140 NESP48681 1621 aa35.11■■■■□ 3.21
GTF3A-201ENST00000381140 SUPT5HO00267 1087 aaKnown RBP35■■■■□ 3.19
GTF3A-201ENST00000381140 LAMC3Q9Y6N6 1575 aa34.99■■■■□ 3.19
GTF3A-201ENST00000381140 ERCC6Q03468 1493 aa34.92■■■■□ 3.18
GTF3A-201ENST00000381140 CADPSQ9ULU8 1353 aa34.88■■■■□ 3.17
GTF3A-201ENST00000381140 CCDC88BA6NC98 1476 aa34.88■■■■□ 3.17
GTF3A-201ENST00000381140 KIF21AQ7Z4S6 1674 aa34.76■■■■□ 3.16
GTF3A-201ENST00000381140 PDS5BQ9NTI5 1447 aa34.73■■■■□ 3.15
GTF3A-201ENST00000381140 CFTRP13569 1480 aa34.7■■■■□ 3.15
GTF3A-201ENST00000381140 PRDM2Q13029 1718 aa34.62■■■■□ 3.13
GTF3A-201ENST00000381140 FANCD2Q9BXW9 1451 aa34.54■■■■□ 3.12
GTF3A-201ENST00000381140 THOC2Q8NI27 1593 aaKnown RBP34.52■■■■□ 3.12
GTF3A-201ENST00000381140 CEP164Q9UPV0 1460 aa34.49■■■■□ 3.11
GTF3A-201ENST00000381140 CUX2O14529 1486 aa34.4■■■■□ 3.1
GTF3A-201ENST00000381140 MRC2Q9UBG0 1479 aa34.39■■■■□ 3.1
GTF3A-201ENST00000381140 WDR62O43379 1518 aa34.26■■■■□ 3.07
GTF3A-201ENST00000381140 URB2Q14146 1524 aaKnown RBP34.19■■■■□ 3.06
GTF3A-201ENST00000381140 TOPBP1Q92547 1522 aa34■■■■□ 3.03
GTF3A-201ENST00000381140 DNMBPQ6XZF7 1577 aa33.98■■■■□ 3.03
GTF3A-201ENST00000381140 ABCC8Q09428 1581 aa33.95■■■■□ 3.03
GTF3A-201ENST00000381140 CUX1P39880 1505 aa33.82■■■■□ 3
GTF3A-201ENST00000381140 IFT140Q96RY7 1462 aa33.72■■■□□ 2.99
GTF3A-201ENST00000381140 POLA1P09884 1462 aaPredicted RBP33.71■■■□□ 2.99
GTF3A-201ENST00000381140 FGD5Q6ZNL6 1462 aa33.69■■■□□ 2.98
GTF3A-201ENST00000381140 WRNQ14191 1432 aaPredicted RBP eCLIP33.63■■■□□ 2.97
GTF3A-201ENST00000381140 TARBP1Q13395 1621 aaKnown RBP33.63■■■□□ 2.97
GTF3A-201ENST00000381140 RAD54L2Q9Y4B4 1467 aa33.61■■■□□ 2.97
GTF3A-201ENST00000381140 ZNF608Q9ULD9 1512 aaPredicted RBP33.61■■■□□ 2.97
GTF3A-201ENST00000381140 SYNJ1O43426 1573 aa33.6■■■□□ 2.97
GTF3A-201ENST00000381140 SOGA1O94964 1423 aa33.58■■■□□ 2.97
GTF3A-201ENST00000381140 BIVM-ERCC5R4GMW8 1640 aa33.58■■■□□ 2.97
GTF3A-201ENST00000381140 TOP2BQ02880 1626 aa33.55■■■□□ 2.96
GTF3A-201ENST00000381140 EIF4G3O43432 1585 aaKnown RBP33.51■■■□□ 2.95
GTF3A-201ENST00000381140 AQRO60306 1485 aaKnown RBP eCLIP33.43■■■□□ 2.946e-7■■■■□ 20.5
GTF3A-201ENST00000381140 WDR97A6NE52 1622 aa33.42■■■□□ 2.94
GTF3A-201ENST00000381140 TDRD9Q8NDG6 1382 aaKnown RBP33.4■■■□□ 2.94
GTF3A-201ENST00000381140 ABCA10Q8WWZ4 1543 aa33.31■■■□□ 2.92
GTF3A-201ENST00000381140 PBRM1Q86U86 1689 aa33.23■■■□□ 2.91
GTF3A-201ENST00000381140 ABCA5Q8WWZ7 1642 aa33.22■■■□□ 2.91
GTF3A-201ENST00000381140 GAPVD1Q14C86 1478 aa33.21■■■□□ 2.91
GTF3A-201ENST00000381140 GRIN2BQ13224 1484 aa33.16■■■□□ 2.9
GTF3A-201ENST00000381140 DNAJC5Q9H3Z4 198 aa33.16■■■□□ 2.9
GTF3A-201ENST00000381140 SNAPC4Q5SXM2 1469 aa33.14■■■□□ 2.9
GTF3A-201ENST00000381140 CHD1O14646 1710 aa33.14■■■□□ 2.9
GTF3A-201ENST00000381140 FBLN2P98095 1184 aa33.08■■■□□ 2.89
GTF3A-201ENST00000381140 MAGI1Q96QZ7 1491 aaPredicted RBP33.05■■■□□ 2.88
GTF3A-201ENST00000381140 OSCARQ8IYS5 282 aa33.03■■■□□ 2.88
GTF3A-201ENST00000381140 TRIM41Q8WV44 630 aa32.98■■■□□ 2.87
GTF3A-201ENST00000381140 CHMP7Q8WUX9 453 aaPredicted RBP32.94■■■□□ 2.86
GTF3A-201ENST00000381140 SYNJ2O15056 1496 aa32.93■■■□□ 2.86
GTF3A-201ENST00000381140 ERICH3Q5RHP9 1530 aa32.92■■■□□ 2.86
GTF3A-201ENST00000381140 KIF27Q86VH2 1401 aa32.91■■■□□ 2.86
GTF3A-201ENST00000381140 ADAMTS12P58397 1594 aa32.9■■■□□ 2.86
GTF3A-201ENST00000381140 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
GTF3A-201ENST00000381140 GRIN2AQ12879 1464 aa32.75■■■□□ 2.83
GTF3A-201ENST00000381140 IGF1RP08069 1367 aa32.73■■■□□ 2.83
GTF3A-201ENST00000381140 RUSC2Q8N2Y8 1516 aa32.72■■■□□ 2.83
GTF3A-201ENST00000381140 CUL7Q14999 1698 aa32.72■■■□□ 2.83
GTF3A-201ENST00000381140 CHIC1Q5VXU3 224 aa32.66■■■□□ 2.82
GTF3A-201ENST00000381140 CLASP1Q7Z460 1538 aa32.65■■■□□ 2.82
GTF3A-201ENST00000381140 CEP170Q5SW79 1584 aa32.62■■■□□ 2.81
GTF3A-201ENST00000381140 CARMIL1Q5VZK9 1371 aa32.57■■■□□ 2.8
GTF3A-201ENST00000381140 RIMBP3CA6NJZ7 1639 aa32.57■■■□□ 2.8
GTF3A-201ENST00000381140 RIMBP3BA6NNM3 1639 aa32.57■■■□□ 2.8
GTF3A-201ENST00000381140 RIMBP3Q9UFD9 1639 aa32.57■■■□□ 2.8
GTF3A-201ENST00000381140 NUP160Q12769 1436 aa32.55■■■□□ 2.8
GTF3A-201ENST00000381140 ARHGEF11O15085 1522 aa32.52■■■□□ 2.8
GTF3A-201ENST00000381140 FAM9AQ8IZU1 332 aaPredicted RBP32.4■■■□□ 2.78
GTF3A-201ENST00000381140 RAPGEF2Q9Y4G8 1499 aa32.4■■■□□ 2.78
GTF3A-201ENST00000381140 EEA1Q15075 1411 aa32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms