RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 CDC42SE1Q9NRR8 79 aa12.18□□□□□ -0.46
VPS16-201ENST00000380443 COX6B2Q6YFQ2 88 aa12.16□□□□□ -0.46
VPS16-201ENST00000380443 KRTAP3-1Q9BYR8 98 aa12.14□□□□□ -0.47
VPS16-201ENST00000380443 LCA10Q71F78 164 aa12.12□□□□□ -0.47
VPS16-201ENST00000380443 TPRXLQ17RH7 258 aa12.05□□□□□ -0.48
VPS16-201ENST00000380443 KTN1-AS1Q86SY8 53 aa12.04□□□□□ -0.48
VPS16-201ENST00000380443 A8MU10 97 aa12□□□□□ -0.49
VPS16-201ENST00000380443 UQCR11O14957 56 aa11.97□□□□□ -0.49
VPS16-201ENST00000380443 SPATA8Q6RVD6 105 aa11.93□□□□□ -0.5
VPS16-201ENST00000380443 HMCN2Q8NDA2 5059 aa11.92□□□□□ -0.5
VPS16-201ENST00000380443 A6NN06 94 aa11.86□□□□□ -0.51
VPS16-201ENST00000380443 MIR22HGQ0VDD5 57 aa11.86□□□□□ -0.51
VPS16-201ENST00000380443 RBM12B-AS1Q9P1G2 102 aa11.8□□□□□ -0.52
VPS16-201ENST00000380443 S4R3F8 94 aa11.72□□□□□ -0.53
VPS16-201ENST00000380443 H1FX-AS1Q4G0G2 97 aa11.71□□□□□ -0.54
VPS16-201ENST00000380443 A0A1B0GU33 70 aa11.68□□□□□ -0.54
VPS16-201ENST00000380443 KRTAP3-3Q9BYR6 98 aa11.68□□□□□ -0.54
VPS16-201ENST00000380443 LRP2P98164 4655 aa11.65□□□□□ -0.54
VPS16-201ENST00000380443 SEC61BP60468 96 aaKnown RBP11.64□□□□□ -0.55
VPS16-201ENST00000380443 LPAP08519 4548 aa11.6□□□□□ -0.55
VPS16-201ENST00000380443 H0YAA0 97 aa11.53□□□□□ -0.56
VPS16-201ENST00000380443 UBR4Q5T4S7 5183 aa11.52□□□□□ -0.56
VPS16-201ENST00000380443 KRTAP10-6P60371 365 aaPredicted RBP11.46□□□□□ -0.58
VPS16-201ENST00000380443 CSAG1Q6PB30 78 aa11.43□□□□□ -0.58
VPS16-201ENST00000380443 KRTAP3-2Q9BYR7 98 aa11.41□□□□□ -0.58
VPS16-201ENST00000380443 K7ERS5 55 aa11.29□□□□□ -0.6
VPS16-201ENST00000380443 RNF213Q63HN8 5207 aa11.26□□□□□ -0.61
VPS16-201ENST00000380443 MUC17Q685J3 4493 aa11.26□□□□□ -0.61
VPS16-201ENST00000380443 ADM2Q7Z4H4 148 aa11.25□□□□□ -0.61
VPS16-201ENST00000380443 P0C880 135 aa11.23□□□□□ -0.61
VPS16-201ENST00000380443 KRTAP4-1Q9BYQ7 146 aa11.21□□□□□ -0.62
VPS16-201ENST00000380443 LINC01554Q52M75 96 aa11.19□□□□□ -0.62
VPS16-201ENST00000380443 KRTAP13-4Q3LI77 160 aa11.16□□□□□ -0.62
VPS16-201ENST00000380443 PRAC1Q96KF2 57 aa11.16□□□□□ -0.62
VPS16-201ENST00000380443 M0QZ58 72 aa11.12□□□□□ -0.63
VPS16-201ENST00000380443 MUC2Q02817 5179 aa11.11□□□□□ -0.63
VPS16-201ENST00000380443 KRTAP19-2Q3LHN2 52 aa11.05□□□□□ -0.64
VPS16-201ENST00000380443 A0A0D9SG42 100 aa11.02□□□□□ -0.65
VPS16-201ENST00000380443 ROMO1P60602 79 aa10.86□□□□□ -0.67
VPS16-201ENST00000380443 R4GN34 69 aa10.84□□□□□ -0.67
VPS16-201ENST00000380443 KRTAP12-1P59990 96 aa10.82□□□□□ -0.68
VPS16-201ENST00000380443 KRTAP12-2P59991 146 aa10.79□□□□□ -0.68
VPS16-201ENST00000380443 FAT4Q6V0I7 4981 aa10.77□□□□□ -0.69
VPS16-201ENST00000380443 FLGP20930 4061 aaPredicted RBP10.76□□□□□ -0.69
VPS16-201ENST00000380443 SPINT4Q6UDR6 99 aa10.76□□□□□ -0.69
VPS16-201ENST00000380443 H3BS24 57 aa10.71□□□□□ -0.69
VPS16-201ENST00000380443 KRTAP25-1Q3LHN0 102 aa10.7□□□□□ -0.7
VPS16-201ENST00000380443 LCE2AQ5TA79 106 aaPredicted RBP10.65□□□□□ -0.7
VPS16-201ENST00000380443 CRIPTQ9P021 101 aa10.62□□□□□ -0.71
VPS16-201ENST00000380443 LORP23490 312 aaPredicted RBP10.61□□□□□ -0.71
VPS16-201ENST00000380443 LCE2CQ5TA81 110 aa10.61□□□□□ -0.71
VPS16-201ENST00000380443 MT1HP80294 61 aa10.49□□□□□ -0.73
VPS16-201ENST00000380443 M0R2T5 61 aa10.4□□□□□ -0.74
VPS16-201ENST00000380443 CAMK2N1Q7Z7J9 78 aa10.21□□□□□ -0.77
VPS16-201ENST00000380443 C10orf95Q9H7T3 257 aa10.2□□□□□ -0.78
VPS16-201ENST00000380443 SPRR2GQ9BYE4 73 aa10.19□□□□□ -0.78
VPS16-201ENST00000380443 KRTAP9-2Q9BYQ4 174 aa10.07□□□□□ -0.8
VPS16-201ENST00000380443 MT2AP02795 61 aa10.05□□□□□ -0.8
VPS16-201ENST00000380443 KRTAP19-1Q8IUB9 90 aa10.05□□□□□ -0.8
VPS16-201ENST00000380443 KRTAP9-8Q9BYQ0 159 aa10.03□□□□□ -0.8
VPS16-201ENST00000380443 KRTAP10-10P60014 251 aa10.01□□□□□ -0.81
VPS16-201ENST00000380443 LCE2DQ5TA82 110 aaPredicted RBP10.01□□□□□ -0.81
VPS16-201ENST00000380443 PLAC4Q8WY50 150 aa10□□□□□ -0.81
VPS16-201ENST00000380443 MT1FP04733 61 aa9.98□□□□□ -0.81
VPS16-201ENST00000380443 PP632Q6XCG6 107 aa9.93□□□□□ -0.82
VPS16-201ENST00000380443 TNP1P09430 55 aa9.85□□□□□ -0.83
VPS16-201ENST00000380443 KRTAP19-8Q3LI54 63 aa9.83□□□□□ -0.84
VPS16-201ENST00000380443 KRTAP23-1A1A580 65 aa9.81□□□□□ -0.84
VPS16-201ENST00000380443 KRTAP15-1Q3LI76 137 aa9.78□□□□□ -0.84
VPS16-201ENST00000380443 KRTAP9-3Q9BYQ3 159 aa9.66□□□□□ -0.86
VPS16-201ENST00000380443 NDUFAF8A1L188 74 aa9.62□□□□□ -0.87
VPS16-201ENST00000380443 KRTAP9-6A0A140TA67 174 aa9.61□□□□□ -0.87
VPS16-201ENST00000380443 FSIP2Q5CZC0 6907 aa9.6□□□□□ -0.87
VPS16-201ENST00000380443 MT1BP07438 61 aa9.59□□□□□ -0.87
VPS16-201ENST00000380443 CRCT1Q9UGL9 99 aa9.59□□□□□ -0.88
VPS16-201ENST00000380443 LCE2BO14633 110 aa9.49□□□□□ -0.89
VPS16-201ENST00000380443 KRTAP10-5P60370 271 aa9.42□□□□□ -0.9
VPS16-201ENST00000380443 USH2AO75445 5202 aa9.42□□□□□ -0.9
VPS16-201ENST00000380443 MT1XP80297 61 aa9.41□□□□□ -0.9
VPS16-201ENST00000380443 PRO2289Q9P1D8 64 aa9.34□□□□□ -0.91
VPS16-201ENST00000380443 SSPOA2VEC9 5147 aa9.25□□□□□ -0.93
VPS16-201ENST00000380443 LCE3AQ5TA76 89 aa9.25□□□□□ -0.93
VPS16-201ENST00000380443 KRTAP8-1Q8IUC2 63 aa9.17□□□□□ -0.94
VPS16-201ENST00000380443 KRTAP19-6Q3LI70 58 aa9.15□□□□□ -0.95
VPS16-201ENST00000380443 KRTAP10-12P60413 245 aa9.13□□□□□ -0.95
VPS16-201ENST00000380443 KRTAP10-7P60409 375 aaPredicted RBP9.03□□□□□ -0.96
VPS16-201ENST00000380443 FCGBPQ9Y6R7 5405 aaPredicted RBP9.02□□□□□ -0.97
VPS16-201ENST00000380443 SPRR5A0A1B0GTR4 108 aa8.98□□□□□ -0.97
VPS16-201ENST00000380443 LUZP6Q538Z0 58 aa8.97□□□□□ -0.97
VPS16-201ENST00000380443 KRTAP12-3P60328 96 aa8.91□□□□□ -0.98
VPS16-201ENST00000380443 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.89□□□□□ -0.99
VPS16-201ENST00000380443 A0A0A0MQY5 61 aa8.86□□□□□ -0.99
VPS16-201ENST00000380443 MACF1Q9UPN3 7388 aaKnown RBP8.71□□□□□ -1.02
VPS16-201ENST00000380443 KRTAP9-7A8MTY7 169 aa8.68□□□□□ -1.02
VPS16-201ENST00000380443 KRTAP19-5Q3LI72 72 aa8.63□□□□□ -1.03
VPS16-201ENST00000380443 SYNE2Q8WXH0 6885 aaKnown RBP8.51□□□□□ -1.05
VPS16-201ENST00000380443 KRTAP4-8A0A0G2JLE6 195 aa8.5□□□□□ -1.05
VPS16-201ENST00000380443 KRTAP4-8Q9BYQ9 185 aa8.5□□□□□ -1.05
VPS16-201ENST00000380443 KRTAP6-3Q3LI67 103 aa8.45□□□□□ -1.06
VPS16-201ENST00000380443 KRTAP19-4Q3LI73 84 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms