RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MYCBP2O75592 4640 aa9.65□□□□□ -0.87
CCDC3-201ENST00000378825 ROMO1P60602 79 aa9.62□□□□□ -0.87
CCDC3-201ENST00000378825 KRTAP13-4Q3LI77 160 aa9.6□□□□□ -0.87
CCDC3-201ENST00000378825 A0A0D9SG42 100 aa9.57□□□□□ -0.88
CCDC3-201ENST00000378825 FAT3Q8TDW7 4589 aa9.57□□□□□ -0.88
CCDC3-201ENST00000378825 TNXBP22105 4242 aa9.56□□□□□ -0.88
CCDC3-201ENST00000378825 KRTAP10-6P60371 365 aaPredicted RBP9.55□□□□□ -0.88
CCDC3-201ENST00000378825 RYR3Q15413 4870 aa9.55□□□□□ -0.88
CCDC3-201ENST00000378825 KRTAP3-3Q9BYR6 98 aa9.54□□□□□ -0.88
CCDC3-201ENST00000378825 K7ERS5 55 aa9.53□□□□□ -0.88
CCDC3-201ENST00000378825 KRTAP10-8P60410 259 aa9.48□□□□□ -0.89
CCDC3-201ENST00000378825 KRTAP3-2Q9BYR7 98 aa9.46□□□□□ -0.89
CCDC3-201ENST00000378825 Q5VSD8 79 aa9.46□□□□□ -0.9
CCDC3-201ENST00000378825 P0C880 135 aa9.45□□□□□ -0.9
CCDC3-201ENST00000378825 RPL37P61927 97 aaKnown RBP9.44□□□□□ -0.9
CCDC3-201ENST00000378825 TPRXLQ17RH7 258 aa9.42□□□□□ -0.9
CCDC3-201ENST00000378825 KRTAP17-1Q9BYP8 105 aa9.42□□□□□ -0.9
CCDC3-201ENST00000378825 C10orf95Q9H7T3 257 aa9.41□□□□□ -0.9
CCDC3-201ENST00000378825 RYR1P21817 5038 aa9.4□□□□□ -0.9
CCDC3-201ENST00000378825 KIAA1109Q2LD37 5005 aa9.4□□□□□ -0.91
CCDC3-201ENST00000378825 LPAP08519 4548 aa9.39□□□□□ -0.91
CCDC3-201ENST00000378825 S4R3F8 94 aa9.32□□□□□ -0.92
CCDC3-201ENST00000378825 KRTAP12-2P59991 146 aa9.27□□□□□ -0.92
CCDC3-201ENST00000378825 XP32Q5T750 250 aa9.27□□□□□ -0.93
CCDC3-201ENST00000378825 SPINT4Q6UDR6 99 aa9.25□□□□□ -0.93
CCDC3-201ENST00000378825 EPPK1P58107 5090 aaKnown RBP9.21□□□□□ -0.93
CCDC3-201ENST00000378825 LRP2P98164 4655 aa9.18□□□□□ -0.94
CCDC3-201ENST00000378825 MT1HL1P0DM35 61 aa9.16□□□□□ -0.94
CCDC3-201ENST00000378825 KRTAP12-1P59990 96 aa9.12□□□□□ -0.95
CCDC3-201ENST00000378825 ABCA13Q86UQ4 5058 aa9.05□□□□□ -0.96
CCDC3-201ENST00000378825 KRTAP15-1Q3LI76 137 aa9.03□□□□□ -0.96
CCDC3-201ENST00000378825 NDUFAF8A1L188 74 aa9.02□□□□□ -0.97
CCDC3-201ENST00000378825 KRTAP4-5Q9BYR2 181 aa8.96□□□□□ -0.97
CCDC3-201ENST00000378825 M0QZ58 72 aa8.83□□□□□ -1
CCDC3-201ENST00000378825 LORP23490 312 aaPredicted RBP8.74□□□□□ -1.01
CCDC3-201ENST00000378825 R4GN34 69 aa8.69□□□□□ -1.02
CCDC3-201ENST00000378825 HERC2O95714 4834 aa8.69□□□□□ -1.02
CCDC3-201ENST00000378825 MUC17Q685J3 4493 aa8.62□□□□□ -1.03
CCDC3-201ENST00000378825 J3QL48 77 aa8.59□□□□□ -1.03
CCDC3-201ENST00000378825 KRTAP4-1Q9BYQ7 146 aa8.58□□□□□ -1.04
CCDC3-201ENST00000378825 MUC2Q02817 5179 aa8.57□□□□□ -1.04
CCDC3-201ENST00000378825 SEC61BP60468 96 aaKnown RBP8.52□□□□□ -1.04
CCDC3-201ENST00000378825 PLAC4Q8WY50 150 aa8.49□□□□□ -1.05
CCDC3-201ENST00000378825 HERC1Q15751 4861 aa8.38□□□□□ -1.07
CCDC3-201ENST00000378825 BIRC6Q9NR09 4857 aa8.35□□□□□ -1.07
CCDC3-201ENST00000378825 KRTAP19-2Q3LHN2 52 aa8.31□□□□□ -1.08
CCDC3-201ENST00000378825 CAMK2N1Q7Z7J9 78 aa8.3□□□□□ -1.08
CCDC3-201ENST00000378825 PCLOQ9Y6V0 5065 aa8.26□□□□□ -1.09
CCDC3-201ENST00000378825 FLGP20930 4061 aaPredicted RBP8.2□□□□□ -1.1
CCDC3-201ENST00000378825 HMCN2Q8NDA2 5059 aa8.16□□□□□ -1.1
CCDC3-201ENST00000378825 FAT4Q6V0I7 4981 aa8.14□□□□□ -1.11
CCDC3-201ENST00000378825 PP632Q6XCG6 107 aa8.11□□□□□ -1.11
CCDC3-201ENST00000378825 LUZP6Q538Z0 58 aa8.09□□□□□ -1.12
CCDC3-201ENST00000378825 RNF213Q63HN8 5207 aa7.99□□□□□ -1.13
CCDC3-201ENST00000378825 TNP1P09430 55 aa7.95□□□□□ -1.14
CCDC3-201ENST00000378825 UBR4Q5T4S7 5183 aa7.92□□□□□ -1.14
CCDC3-201ENST00000378825 LCE2CQ5TA81 110 aa7.87□□□□□ -1.15
CCDC3-201ENST00000378825 A0A0A0MQY5 61 aa7.83□□□□□ -1.16
CCDC3-201ENST00000378825 SPRR5A0A1B0GTR4 108 aa7.79□□□□□ -1.16
CCDC3-201ENST00000378825 M0R2T5 61 aa7.78□□□□□ -1.16
CCDC3-201ENST00000378825 KRTAP23-1A1A580 65 aa7.69□□□□□ -1.18
CCDC3-201ENST00000378825 KRTAP19-1Q8IUB9 90 aa7.69□□□□□ -1.18
CCDC3-201ENST00000378825 MT1HP80294 61 aa7.68□□□□□ -1.18
CCDC3-201ENST00000378825 LCE3AQ5TA76 89 aa7.65□□□□□ -1.19
CCDC3-201ENST00000378825 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
CCDC3-201ENST00000378825 MT1FP04733 61 aa7.56□□□□□ -1.2
CCDC3-201ENST00000378825 KRTAP10-10P60014 251 aa7.56□□□□□ -1.2
CCDC3-201ENST00000378825 MT2AP02795 61 aa7.53□□□□□ -1.2
CCDC3-201ENST00000378825 KRTAP9-8Q9BYQ0 159 aa7.48□□□□□ -1.21
CCDC3-201ENST00000378825 KRTAP8-1Q8IUC2 63 aa7.31□□□□□ -1.24
CCDC3-201ENST00000378825 KRTAP10-5P60370 271 aa7.28□□□□□ -1.24
CCDC3-201ENST00000378825 MT1XP80297 61 aa7.26□□□□□ -1.25
CCDC3-201ENST00000378825 MT1BP07438 61 aa7.25□□□□□ -1.25
CCDC3-201ENST00000378825 KRTAP19-8Q3LI54 63 aa7.25□□□□□ -1.25
CCDC3-201ENST00000378825 KRTAP12-3P60328 96 aa7.19□□□□□ -1.26
CCDC3-201ENST00000378825 KRTAP10-7P60409 375 aaPredicted RBP7.17□□□□□ -1.26
CCDC3-201ENST00000378825 KRTAP10-12P60413 245 aa7.15□□□□□ -1.26
CCDC3-201ENST00000378825 KRTAP9-3Q9BYQ3 159 aa7.15□□□□□ -1.26
CCDC3-201ENST00000378825 USH2AO75445 5202 aa7.11□□□□□ -1.27
CCDC3-201ENST00000378825 PRO2289Q9P1D8 64 aa7.1□□□□□ -1.27
CCDC3-201ENST00000378825 KMT2DO14686 5537 aa7.07□□□□□ -1.28
CCDC3-201ENST00000378825 INE1O15225 51 aa6.95□□□□□ -1.3
CCDC3-201ENST00000378825 LCE2BO14633 110 aa6.94□□□□□ -1.3
CCDC3-201ENST00000378825 KRTAP19-5Q3LI72 72 aa6.87□□□□□ -1.31
CCDC3-201ENST00000378825 LCE2AQ5TA79 106 aaPredicted RBP6.8□□□□□ -1.32
CCDC3-201ENST00000378825 LCE3CQ5T5A8 94 aa6.77□□□□□ -1.33
CCDC3-201ENST00000378825 KRTAP4-8A0A0G2JLE6 195 aa6.75□□□□□ -1.33
CCDC3-201ENST00000378825 KRTAP4-8Q9BYQ9 185 aa6.75□□□□□ -1.33
CCDC3-201ENST00000378825 KRTAP9-6A8MVA2 160 aa6.73□□□□□ -1.33
CCDC3-201ENST00000378825 KRTAP4-7Q9BYR0 210 aa6.63□□□□□ -1.35
CCDC3-201ENST00000378825 FSIP2Q5CZC0 6907 aa6.61□□□□□ -1.35
CCDC3-201ENST00000378825 SSPOA2VEC9 5147 aa6.48□□□□□ -1.37
CCDC3-201ENST00000378825 KRTAP19-7Q3SYF9 63 aa6.48□□□□□ -1.37
CCDC3-201ENST00000378825 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.38
CCDC3-201ENST00000378825 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.38
CCDC3-201ENST00000378825 KRTAP2-1Q9BYU5 128 aa6.4□□□□□ -1.38
CCDC3-201ENST00000378825 MT1LQ93083 61 aa6.27□□□□□ -1.41
CCDC3-201ENST00000378825 MT1EP04732 61 aa6.22□□□□□ -1.41
CCDC3-201ENST00000378825 LOC100996750A0A140TA64 210 aa6.16□□□□□ -1.42
CCDC3-201ENST00000378825 FCGBPQ9Y6R7 5405 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms