RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 KRTAP10-10P60014 251 aa8.87□□□□□ -0.99
SSU72-203ENST00000378725 CSAG1Q6PB30 78 aa8.84□□□□□ -0.99
SSU72-203ENST00000378725 CRCT1Q9UGL9 99 aa8.82□□□□□ -1
SSU72-203ENST00000378725 SERP2Q8N6R1 65 aa8.8□□□□□ -1
SSU72-203ENST00000378725 KRTAP9-3Q9BYQ3 159 aa8.8□□□□□ -1
SSU72-203ENST00000378725 DMAC1Q96GE9 116 aa8.75□□□□□ -1.01
SSU72-203ENST00000378725 NDUFC1O43677 76 aa8.72□□□□□ -1.01
SSU72-203ENST00000378725 SNURFQ9Y675 71 aa8.72□□□□□ -1.01
SSU72-203ENST00000378725 C20orf197Q8N268 126 aa8.69□□□□□ -1.02
SSU72-203ENST00000378725 LCE2BO14633 110 aa8.66□□□□□ -1.02
SSU72-203ENST00000378725 COX7CP15954 63 aa8.64□□□□□ -1.03
SSU72-203ENST00000378725 ACYP2P14621 99 aa8.61□□□□□ -1.03
SSU72-203ENST00000378725 H0YAA0 97 aa8.59□□□□□ -1.03
SSU72-203ENST00000378725 SPANXA2-OT1Q8N9U9 137 aa8.59□□□□□ -1.03
SSU72-203ENST00000378725 USH2AO75445 5202 aa8.51□□□□□ -1.05
SSU72-203ENST00000378725 KRTAP19-1Q8IUB9 90 aa8.51□□□□□ -1.05
SSU72-203ENST00000378725 ANAPC13Q9BS18 74 aa8.5□□□□□ -1.05
SSU72-203ENST00000378725 ADM2Q7Z4H4 148 aa8.46□□□□□ -1.06
SSU72-203ENST00000378725 SPRR2GQ9BYE4 73 aa8.46□□□□□ -1.06
SSU72-203ENST00000378725 CRIPTQ9P021 101 aa8.46□□□□□ -1.06
SSU72-203ENST00000378725 CYSTM1Q9H1C7 97 aa8.44□□□□□ -1.06
SSU72-203ENST00000378725 H7BZZ5 65 aa8.43□□□□□ -1.06
SSU72-203ENST00000378725 CHKB-CPT1BH3BT56 60 aa8.41□□□□□ -1.06
SSU72-203ENST00000378725 SPTSSBQ8NFR3 76 aa8.41□□□□□ -1.06
SSU72-203ENST00000378725 KRTAP19-8Q3LI54 63 aa8.36□□□□□ -1.07
SSU72-203ENST00000378725 SSPOA2VEC9 5147 aa8.36□□□□□ -1.07
SSU72-203ENST00000378725 KRTAP9-7A8MTY7 169 aa8.33□□□□□ -1.08
SSU72-203ENST00000378725 CCDC179H3BU77 68 aa8.33□□□□□ -1.08
SSU72-203ENST00000378725 P0C880 135 aa8.32□□□□□ -1.08
SSU72-203ENST00000378725 KRTAP19-6Q3LI70 58 aa8.3□□□□□ -1.08
SSU72-203ENST00000378725 COA5Q86WW8 74 aa8.3□□□□□ -1.08
SSU72-203ENST00000378725 MT1BP07438 61 aa8.29□□□□□ -1.08
SSU72-203ENST00000378725 Q5VV11 94 aa8.29□□□□□ -1.08
SSU72-203ENST00000378725 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.25□□□□□ -1.09
SSU72-203ENST00000378725 R4GN34 69 aa8.2□□□□□ -1.1
SSU72-203ENST00000378725 M0QZ58 72 aa8.15□□□□□ -1.1
SSU72-203ENST00000378725 FCGBPQ9Y6R7 5405 aaPredicted RBP8.12□□□□□ -1.11
SSU72-203ENST00000378725 ATP5EP56381 51 aaPredicted RBP8.12□□□□□ -1.11
SSU72-203ENST00000378725 TMEM258P61165 79 aa8.04□□□□□ -1.12
SSU72-203ENST00000378725 KRTAP10-5P60370 271 aa8.03□□□□□ -1.12
SSU72-203ENST00000378725 A6NN06 94 aa8.02□□□□□ -1.13
SSU72-203ENST00000378725 SEC61GP60059 68 aa8.01□□□□□ -1.13
SSU72-203ENST00000378725 PLAC4Q8WY50 150 aa8□□□□□ -1.13
SSU72-203ENST00000378725 LINC01554Q52M75 96 aa7.99□□□□□ -1.13
SSU72-203ENST00000378725 SERP1Q9Y6X1 66 aa7.99□□□□□ -1.13
SSU72-203ENST00000378725 KRTAP13-4Q3LI77 160 aa7.93□□□□□ -1.14
SSU72-203ENST00000378725 A0A1B0GU33 70 aa7.86□□□□□ -1.15
SSU72-203ENST00000378725 A0A1B0GU69 56 aa7.86□□□□□ -1.15
SSU72-203ENST00000378725 MT1XP80297 61 aa7.86□□□□□ -1.15
SSU72-203ENST00000378725 SYNE2Q8WXH0 6885 aaKnown RBP7.86□□□□□ -1.15
SSU72-203ENST00000378725 PRO2289Q9P1D8 64 aa7.84□□□□□ -1.15
SSU72-203ENST00000378725 LINC01558Q9Y6Z2 57 aa7.79□□□□□ -1.16
SSU72-203ENST00000378725 MACF1Q9UPN3 7388 aaKnown RBP7.78□□□□□ -1.16
SSU72-203ENST00000378725 SPATA8Q6RVD6 105 aa7.77□□□□□ -1.17
SSU72-203ENST00000378725 PCP4P48539 62 aa7.73□□□□□ -1.17
SSU72-203ENST00000378725 PRR15LQ9BU68 103 aa7.73□□□□□ -1.17
SSU72-203ENST00000378725 A0A0D9SG42 100 aa7.69□□□□□ -1.18
SSU72-203ENST00000378725 KRTAP6-3Q3LI67 103 aa7.64□□□□□ -1.19
SSU72-203ENST00000378725 SMIM26A0A096LP01 95 aa7.63□□□□□ -1.19
SSU72-203ENST00000378725 KRTAP12-2P59991 146 aa7.62□□□□□ -1.19
SSU72-203ENST00000378725 KRTAP12-1P59990 96 aa7.59□□□□□ -1.19
SSU72-203ENST00000378725 CAMK2N1Q7Z7J9 78 aa7.58□□□□□ -1.2
SSU72-203ENST00000378725 A8MU10 97 aa7.56□□□□□ -1.2
SSU72-203ENST00000378725 SPINT4Q6UDR6 99 aa7.56□□□□□ -1.2
SSU72-203ENST00000378725 V9GYY9 64 aa7.54□□□□□ -1.2
SSU72-203ENST00000378725 Q1T7F1 81 aa7.53□□□□□ -1.2
SSU72-203ENST00000378725 UQCR11O14957 56 aa7.5□□□□□ -1.21
SSU72-203ENST00000378725 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
SSU72-203ENST00000378725 RPS28P62857 69 aaKnown RBP7.5□□□□□ -1.21
SSU72-203ENST00000378725 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
SSU72-203ENST00000378725 KRTAP5-9P26371 169 aa7.45□□□□□ -1.22
SSU72-203ENST00000378725 PSPHP1O15172 72 aa7.42□□□□□ -1.22
SSU72-203ENST00000378725 NEBP20929 6669 aa7.4□□□□□ -1.22
SSU72-203ENST00000378725 KRTAP4-8A0A0G2JLE6 195 aa7.39□□□□□ -1.23
SSU72-203ENST00000378725 KRTAP4-8Q9BYQ9 185 aa7.39□□□□□ -1.23
SSU72-203ENST00000378725 KRTAP8-1Q8IUC2 63 aa7.38□□□□□ -1.23
SSU72-203ENST00000378725 MIR22HGQ0VDD5 57 aa7.36□□□□□ -1.23
SSU72-203ENST00000378725 KMT2DO14686 5537 aa7.36□□□□□ -1.23
SSU72-203ENST00000378725 SPRR2FQ96RM1 72 aa7.27□□□□□ -1.25
SSU72-203ENST00000378725 MUC12Q9UKN1 5478 aa7.25□□□□□ -1.25
SSU72-203ENST00000378725 KRTAP20-1Q3LI63 56 aa7.23□□□□□ -1.25
SSU72-203ENST00000378725 C10orf95Q9H7T3 257 aa7.23□□□□□ -1.25
SSU72-203ENST00000378725 A6NED7 52 aa7.18□□□□□ -1.26
SSU72-203ENST00000378725 K7ERS5 55 aa7.13□□□□□ -1.27
SSU72-203ENST00000378725 TNP1P09430 55 aa7.12□□□□□ -1.27
SSU72-203ENST00000378725 SPRR2EP22531 72 aa7.08□□□□□ -1.28
SSU72-203ENST00000378725 SPRR2BP35325 72 aa7.08□□□□□ -1.28
SSU72-203ENST00000378725 SPRR2AP35326 72 aa7.08□□□□□ -1.28
SSU72-203ENST00000378725 LCE1AQ5T7P2 110 aa7.07□□□□□ -1.28
SSU72-203ENST00000378725 MDN1Q9NU22 5596 aa7.05□□□□□ -1.28
SSU72-203ENST00000378725 KRTAP19-7Q3SYF9 63 aa7.03□□□□□ -1.28
SSU72-203ENST00000378725 CDC42SE1Q9NRR8 79 aa6.96□□□□□ -1.3
SSU72-203ENST00000378725 LCE3AQ5TA76 89 aa6.95□□□□□ -1.3
SSU72-203ENST00000378725 MT1EP04732 61 aa6.94□□□□□ -1.3
SSU72-203ENST00000378725 KRTAP19-5Q3LI72 72 aa6.94□□□□□ -1.3
SSU72-203ENST00000378725 LOC100996750A0A140TA64 210 aa6.93□□□□□ -1.3
SSU72-203ENST00000378725 KRTAP4-6Q9BYQ5 205 aa6.93□□□□□ -1.3
SSU72-203ENST00000378725 KRTAP25-1Q3LHN0 102 aa6.91□□□□□ -1.3
SSU72-203ENST00000378725 KRTAP2-3P0C7H8 128 aa6.84□□□□□ -1.31
SSU72-203ENST00000378725 KRTAP2-4Q9BYR9 128 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms