RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 KRTAP17-1Q9BYP8 105 aa13.21□□□□□ -0.3
C9orf40-201ENST00000376854 CSAG1Q6PB30 78 aa13.17□□□□□ -0.3
C9orf40-201ENST00000376854 MYCBP2O75592 4640 aa13.16□□□□□ -0.3
C9orf40-201ENST00000376854 DMBT1Q9UGM3 2413 aaPredicted RBP13.13□□□□□ -0.31
C9orf40-201ENST00000376854 LINC01554Q52M75 96 aa13.13□□□□□ -0.31
C9orf40-201ENST00000376854 KIAA1109Q2LD37 5005 aa13.13□□□□□ -0.31
C9orf40-201ENST00000376854 RPL37P61927 97 aaKnown RBP13.1□□□□□ -0.31
C9orf40-201ENST00000376854 XP32Q5T750 250 aa13.03□□□□□ -0.32
C9orf40-201ENST00000376854 KRTAP3-3Q9BYR6 98 aa13□□□□□ -0.33
C9orf40-201ENST00000376854 K7ERS5 55 aa12.93□□□□□ -0.34
C9orf40-201ENST00000376854 EPPK1P58107 5090 aaKnown RBP12.92□□□□□ -0.34
C9orf40-201ENST00000376854 KRTAP10-6P60371 365 aaPredicted RBP12.91□□□□□ -0.34
C9orf40-201ENST00000376854 MT1HL1P0DM35 61 aa12.9□□□□□ -0.34
C9orf40-201ENST00000376854 S4R3F8 94 aa12.89□□□□□ -0.35
C9orf40-201ENST00000376854 KRTAP25-1Q3LHN0 102 aa12.82□□□□□ -0.36
C9orf40-201ENST00000376854 KRTAP3-2Q9BYR7 98 aa12.82□□□□□ -0.36
C9orf40-201ENST00000376854 KRTAP13-4Q3LI77 160 aa12.78□□□□□ -0.36
C9orf40-201ENST00000376854 LPAP08519 4548 aa12.71□□□□□ -0.37
C9orf40-201ENST00000376854 A0A0D9SG42 100 aa12.71□□□□□ -0.38
C9orf40-201ENST00000376854 LRP2P98164 4655 aa12.68□□□□□ -0.38
C9orf40-201ENST00000376854 P0C880 135 aa12.66□□□□□ -0.38
C9orf40-201ENST00000376854 ROMO1P60602 79 aa12.63□□□□□ -0.39
C9orf40-201ENST00000376854 CRIPTQ9P021 101 aa12.63□□□□□ -0.39
C9orf40-201ENST00000376854 ABCA13Q86UQ4 5058 aa12.59□□□□□ -0.39
C9orf40-201ENST00000376854 KRTAP4-5Q9BYR2 181 aa12.55□□□□□ -0.4
C9orf40-201ENST00000376854 TPRXLQ17RH7 258 aa12.51□□□□□ -0.41
C9orf40-201ENST00000376854 H3BS24 57 aa12.49□□□□□ -0.41
C9orf40-201ENST00000376854 KRTAP12-2P59991 146 aa12.38□□□□□ -0.43
C9orf40-201ENST00000376854 KRTAP12-1P59990 96 aa12.29□□□□□ -0.44
C9orf40-201ENST00000376854 SPINT4Q6UDR6 99 aa12.28□□□□□ -0.44
C9orf40-201ENST00000376854 BIRC6Q9NR09 4857 aa12.28□□□□□ -0.44
C9orf40-201ENST00000376854 M0QZ58 72 aa12.26□□□□□ -0.45
C9orf40-201ENST00000376854 HERC2O95714 4834 aa12.19□□□□□ -0.46
C9orf40-201ENST00000376854 C10orf95Q9H7T3 257 aa12.19□□□□□ -0.46
C9orf40-201ENST00000376854 MUC17Q685J3 4493 aa12.13□□□□□ -0.47
C9orf40-201ENST00000376854 SEC61BP60468 96 aaKnown RBP12.05□□□□□ -0.48
C9orf40-201ENST00000376854 J3QL48 77 aa12.03□□□□□ -0.48
C9orf40-201ENST00000376854 KRTAP4-1Q9BYQ7 146 aa12□□□□□ -0.49
C9orf40-201ENST00000376854 R4GN34 69 aa11.97□□□□□ -0.49
C9orf40-201ENST00000376854 LORP23490 312 aaPredicted RBP11.8□□□□□ -0.52
C9orf40-201ENST00000376854 MUC2Q02817 5179 aa11.74□□□□□ -0.53
C9orf40-201ENST00000376854 KRTAP19-2Q3LHN2 52 aa11.73□□□□□ -0.53
C9orf40-201ENST00000376854 KRTAP15-1Q3LI76 137 aa11.69□□□□□ -0.54
C9orf40-201ENST00000376854 HERC1Q15751 4861 aa11.66□□□□□ -0.54
C9orf40-201ENST00000376854 PCLOQ9Y6V0 5065 aa11.57□□□□□ -0.56
C9orf40-201ENST00000376854 HMCN2Q8NDA2 5059 aa11.52□□□□□ -0.56
C9orf40-201ENST00000376854 FLGP20930 4061 aaPredicted RBP11.49□□□□□ -0.57
C9orf40-201ENST00000376854 NDUFAF8A1L188 74 aa11.4□□□□□ -0.58
C9orf40-201ENST00000376854 CAMK2N1Q7Z7J9 78 aa11.37□□□□□ -0.59
C9orf40-201ENST00000376854 FAT4Q6V0I7 4981 aa11.22□□□□□ -0.61
C9orf40-201ENST00000376854 PLAC4Q8WY50 150 aa11.2□□□□□ -0.62
C9orf40-201ENST00000376854 PP632Q6XCG6 107 aa11.17□□□□□ -0.62
C9orf40-201ENST00000376854 LCE2CQ5TA81 110 aa11.12□□□□□ -0.63
C9orf40-201ENST00000376854 RNF213Q63HN8 5207 aa11.02□□□□□ -0.65
C9orf40-201ENST00000376854 UBR4Q5T4S7 5183 aa11.01□□□□□ -0.65
C9orf40-201ENST00000376854 TNP1P09430 55 aa10.94□□□□□ -0.66
C9orf40-201ENST00000376854 MT1HP80294 61 aa10.8□□□□□ -0.68
C9orf40-201ENST00000376854 SPRR2GQ9BYE4 73 aa10.8□□□□□ -0.68
C9orf40-201ENST00000376854 M0R2T5 61 aa10.8□□□□□ -0.68
C9orf40-201ENST00000376854 KRTAP23-1A1A580 65 aa10.79□□□□□ -0.68
C9orf40-201ENST00000376854 KRTAP19-1Q8IUB9 90 aa10.74□□□□□ -0.69
C9orf40-201ENST00000376854 LUZP6Q538Z0 58 aa10.68□□□□□ -0.7
C9orf40-201ENST00000376854 MT1FP04733 61 aa10.6□□□□□ -0.71
C9orf40-201ENST00000376854 MT2AP02795 61 aa10.59□□□□□ -0.71
C9orf40-201ENST00000376854 KRTAP10-10P60014 251 aa10.55□□□□□ -0.72
C9orf40-201ENST00000376854 KRTAP9-8Q9BYQ0 159 aa10.53□□□□□ -0.72
C9orf40-201ENST00000376854 SPRR5A0A1B0GTR4 108 aa10.41□□□□□ -0.74
C9orf40-201ENST00000376854 LCE3AQ5TA76 89 aa10.36□□□□□ -0.75
C9orf40-201ENST00000376854 A0A0A0MQY5 61 aa10.32□□□□□ -0.76
C9orf40-201ENST00000376854 KRTAP19-8Q3LI54 63 aa10.31□□□□□ -0.76
C9orf40-201ENST00000376854 MT1BP07438 61 aa10.19□□□□□ -0.78
C9orf40-201ENST00000376854 KRTAP10-5P60370 271 aa10.14□□□□□ -0.79
C9orf40-201ENST00000376854 MT1XP80297 61 aa10.12□□□□□ -0.79
C9orf40-201ENST00000376854 KRTAP8-1Q8IUC2 63 aa10.09□□□□□ -0.79
C9orf40-201ENST00000376854 KRTAP9-3Q9BYQ3 159 aa10.09□□□□□ -0.79
C9orf40-201ENST00000376854 KRTAP10-12P60413 245 aa9.95□□□□□ -0.82
C9orf40-201ENST00000376854 KRTAP12-3P60328 96 aa9.87□□□□□ -0.83
C9orf40-201ENST00000376854 KRTAP10-7P60409 375 aaPredicted RBP9.84□□□□□ -0.83
C9orf40-201ENST00000376854 LCE2BO14633 110 aa9.76□□□□□ -0.85
C9orf40-201ENST00000376854 PRO2289Q9P1D8 64 aa9.76□□□□□ -0.85
C9orf40-201ENST00000376854 LCE2AQ5TA79 106 aaPredicted RBP9.71□□□□□ -0.85
C9orf40-201ENST00000376854 USH2AO75445 5202 aa9.71□□□□□ -0.86
C9orf40-201ENST00000376854 KRTAP19-5Q3LI72 72 aa9.45□□□□□ -0.9
C9orf40-201ENST00000376854 KMT2DO14686 5537 aa9.44□□□□□ -0.9
C9orf40-201ENST00000376854 LCE3CQ5T5A8 94 aa9.29□□□□□ -0.92
C9orf40-201ENST00000376854 KRTAP4-8A0A0G2JLE6 195 aa9.26□□□□□ -0.93
C9orf40-201ENST00000376854 KRTAP4-8Q9BYQ9 185 aa9.26□□□□□ -0.93
C9orf40-201ENST00000376854 INE1O15225 51 aa9.18□□□□□ -0.94
C9orf40-201ENST00000376854 LCE2DQ5TA82 110 aaPredicted RBP9.15□□□□□ -0.95
C9orf40-201ENST00000376854 SSPOA2VEC9 5147 aa9.1□□□□□ -0.95
C9orf40-201ENST00000376854 KRTAP9-2Q9BYQ4 174 aa9.09□□□□□ -0.95
C9orf40-201ENST00000376854 KRTAP19-7Q3SYF9 63 aa9.02□□□□□ -0.97
C9orf40-201ENST00000376854 KRTAP9-6A8MVA2 160 aa8.94□□□□□ -0.98
C9orf40-201ENST00000376854 FSIP2Q5CZC0 6907 aa8.93□□□□□ -0.98
C9orf40-201ENST00000376854 KRTAP4-7Q9BYR0 210 aa8.85□□□□□ -0.99
C9orf40-201ENST00000376854 KRTAP19-6Q3LI70 58 aa8.76□□□□□ -1.01
C9orf40-201ENST00000376854 KRTAP19-4Q3LI73 84 aa8.76□□□□□ -1.01
C9orf40-201ENST00000376854 MT1EP04732 61 aa8.76□□□□□ -1.01
C9orf40-201ENST00000376854 MT1LQ93083 61 aa8.76□□□□□ -1.01
C9orf40-201ENST00000376854 KRTAP9-6A0A140TA67 174 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms