RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 KRTAP3-3Q9BYR6 98 aa10.91□□□□□ -0.66
UPF3A-202ENST00000375299 KMT2CQ8NEZ4 4911 aaKnown RBP10.88□□□□□ -0.67
UPF3A-202ENST00000375299 FAT3Q8TDW7 4589 aa10.88□□□□□ -0.67
UPF3A-202ENST00000375299 KRTAP13-4Q3LI77 160 aa10.88□□□□□ -0.67
UPF3A-202ENST00000375299 KRTAP3-2Q9BYR7 98 aa10.83□□□□□ -0.68
UPF3A-202ENST00000375299 A0A0D9SG42 100 aa10.81□□□□□ -0.68
UPF3A-202ENST00000375299 TNXBP22105 4242 aa10.78□□□□□ -0.68
UPF3A-202ENST00000375299 S4R3F8 94 aa10.77□□□□□ -0.68
UPF3A-202ENST00000375299 LRP1Q07954 4544 aaKnown RBP10.76□□□□□ -0.69
UPF3A-202ENST00000375299 KRTAP10-8P60410 259 aa10.73□□□□□ -0.69
UPF3A-202ENST00000375299 P0C880 135 aa10.72□□□□□ -0.69
UPF3A-202ENST00000375299 TPRXLQ17RH7 258 aa10.71□□□□□ -0.69
UPF3A-202ENST00000375299 HSPG2P98160 4391 aa10.71□□□□□ -0.7
UPF3A-202ENST00000375299 RYR3Q15413 4870 aa10.7□□□□□ -0.7
UPF3A-202ENST00000375299 DMBT1Q9UGM3 2413 aaPredicted RBP10.69□□□□□ -0.7
UPF3A-202ENST00000375299 Q5VSD8 79 aa10.66□□□□□ -0.7
UPF3A-202ENST00000375299 XP32Q5T750 250 aa10.65□□□□□ -0.7
UPF3A-202ENST00000375299 SPINT4Q6UDR6 99 aa10.59□□□□□ -0.71
UPF3A-202ENST00000375299 C10orf95Q9H7T3 257 aa10.59□□□□□ -0.71
UPF3A-202ENST00000375299 KRTAP12-2P59991 146 aa10.55□□□□□ -0.72
UPF3A-202ENST00000375299 RYR1P21817 5038 aa10.52□□□□□ -0.73
UPF3A-202ENST00000375299 KRTAP17-1Q9BYP8 105 aa10.5□□□□□ -0.73
UPF3A-202ENST00000375299 MYCBP2O75592 4640 aa10.49□□□□□ -0.73
UPF3A-202ENST00000375299 KRTAP12-1P59990 96 aa10.46□□□□□ -0.73
UPF3A-202ENST00000375299 MT1HL1P0DM35 61 aa10.39□□□□□ -0.75
UPF3A-202ENST00000375299 KRTAP15-1Q3LI76 137 aa10.38□□□□□ -0.75
UPF3A-202ENST00000375299 KIAA1109Q2LD37 5005 aa10.36□□□□□ -0.75
UPF3A-202ENST00000375299 M0QZ58 72 aa10.33□□□□□ -0.76
UPF3A-202ENST00000375299 EPPK1P58107 5090 aaKnown RBP10.32□□□□□ -0.76
UPF3A-202ENST00000375299 LPAP08519 4548 aa10.25□□□□□ -0.77
UPF3A-202ENST00000375299 NDUFAF8A1L188 74 aa10.22□□□□□ -0.77
UPF3A-202ENST00000375299 LRP2P98164 4655 aa10.16□□□□□ -0.78
UPF3A-202ENST00000375299 BIRC6Q9NR09 4857 aa10.07□□□□□ -0.8
UPF3A-202ENST00000375299 ABCA13Q86UQ4 5058 aa10□□□□□ -0.81
UPF3A-202ENST00000375299 R4GN34 69 aa10□□□□□ -0.81
UPF3A-202ENST00000375299 KRTAP4-5Q9BYR2 181 aa9.93□□□□□ -0.82
UPF3A-202ENST00000375299 HERC2O95714 4834 aa9.83□□□□□ -0.84
UPF3A-202ENST00000375299 LORP23490 312 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-202ENST00000375299 MUC17Q685J3 4493 aa9.78□□□□□ -0.84
UPF3A-202ENST00000375299 PLAC4Q8WY50 150 aa9.77□□□□□ -0.85
UPF3A-202ENST00000375299 SEC61BP60468 96 aaKnown RBP9.76□□□□□ -0.85
UPF3A-202ENST00000375299 KRTAP4-1Q9BYQ7 146 aa9.67□□□□□ -0.86
UPF3A-202ENST00000375299 J3QL48 77 aa9.6□□□□□ -0.87
UPF3A-202ENST00000375299 PCLOQ9Y6V0 5065 aa9.6□□□□□ -0.87
UPF3A-202ENST00000375299 PP632Q6XCG6 107 aa9.58□□□□□ -0.88
UPF3A-202ENST00000375299 CAMK2N1Q7Z7J9 78 aa9.53□□□□□ -0.88
UPF3A-202ENST00000375299 KRTAP19-2Q3LHN2 52 aa9.51□□□□□ -0.89
UPF3A-202ENST00000375299 LUZP6Q538Z0 58 aa9.39□□□□□ -0.91
UPF3A-202ENST00000375299 MUC2Q02817 5179 aa9.3□□□□□ -0.92
UPF3A-202ENST00000375299 HERC1Q15751 4861 aa9.24□□□□□ -0.93
UPF3A-202ENST00000375299 TNP1P09430 55 aa9.23□□□□□ -0.93
UPF3A-202ENST00000375299 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-202ENST00000375299 KRTAP23-1A1A580 65 aa9.2□□□□□ -0.94
UPF3A-202ENST00000375299 A0A0A0MQY5 61 aa9.14□□□□□ -0.95
UPF3A-202ENST00000375299 HMCN2Q8NDA2 5059 aa9.07□□□□□ -0.96
UPF3A-202ENST00000375299 SPRR5A0A1B0GTR4 108 aa9.07□□□□□ -0.96
UPF3A-202ENST00000375299 LCE2CQ5TA81 110 aa8.94□□□□□ -0.98
UPF3A-202ENST00000375299 FAT4Q6V0I7 4981 aa8.87□□□□□ -0.99
UPF3A-202ENST00000375299 SPRR2GQ9BYE4 73 aa8.85□□□□□ -0.99
UPF3A-202ENST00000375299 KRTAP19-1Q8IUB9 90 aa8.78□□□□□ -1
UPF3A-202ENST00000375299 LCE3AQ5TA76 89 aa8.71□□□□□ -1.02
UPF3A-202ENST00000375299 UBR4Q5T4S7 5183 aa8.71□□□□□ -1.02
UPF3A-202ENST00000375299 M0R2T5 61 aa8.69□□□□□ -1.02
UPF3A-202ENST00000375299 MT1HP80294 61 aa8.69□□□□□ -1.02
UPF3A-202ENST00000375299 RNF213Q63HN8 5207 aa8.68□□□□□ -1.02
UPF3A-202ENST00000375299 MT2AP02795 61 aa8.55□□□□□ -1.04
UPF3A-202ENST00000375299 MT1FP04733 61 aa8.55□□□□□ -1.04
UPF3A-202ENST00000375299 KRTAP10-10P60014 251 aa8.52□□□□□ -1.05
UPF3A-202ENST00000375299 KRTAP9-8Q9BYQ0 159 aa8.5□□□□□ -1.05
UPF3A-202ENST00000375299 KRTAP8-1Q8IUC2 63 aa8.49□□□□□ -1.05
UPF3A-202ENST00000375299 KRTAP19-8Q3LI54 63 aa8.41□□□□□ -1.06
UPF3A-202ENST00000375299 KRTAP10-5P60370 271 aa8.33□□□□□ -1.08
UPF3A-202ENST00000375299 PRO2289Q9P1D8 64 aa8.32□□□□□ -1.08
UPF3A-202ENST00000375299 MT1XP80297 61 aa8.3□□□□□ -1.08
UPF3A-202ENST00000375299 MT1BP07438 61 aa8.29□□□□□ -1.08
UPF3A-202ENST00000375299 KRTAP12-3P60328 96 aa8.27□□□□□ -1.09
UPF3A-202ENST00000375299 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
UPF3A-202ENST00000375299 INE1O15225 51 aa8.24□□□□□ -1.09
UPF3A-202ENST00000375299 KRTAP9-3Q9BYQ3 159 aa8.14□□□□□ -1.11
UPF3A-202ENST00000375299 KRTAP10-7P60409 375 aaPredicted RBP8.1□□□□□ -1.11
UPF3A-202ENST00000375299 LCE2AQ5TA79 106 aaPredicted RBP7.85□□□□□ -1.15
UPF3A-202ENST00000375299 KRTAP19-5Q3LI72 72 aa7.82□□□□□ -1.16
UPF3A-202ENST00000375299 LCE2BO14633 110 aa7.82□□□□□ -1.16
UPF3A-202ENST00000375299 LCE3CQ5T5A8 94 aa7.81□□□□□ -1.16
UPF3A-202ENST00000375299 USH2AO75445 5202 aa7.66□□□□□ -1.18
UPF3A-202ENST00000375299 KRTAP9-6A8MVA2 160 aa7.55□□□□□ -1.2
UPF3A-202ENST00000375299 KMT2DO14686 5537 aa7.53□□□□□ -1.2
UPF3A-202ENST00000375299 KRTAP4-8A0A0G2JLE6 195 aa7.51□□□□□ -1.21
UPF3A-202ENST00000375299 KRTAP4-8Q9BYQ9 185 aa7.51□□□□□ -1.21
UPF3A-202ENST00000375299 KRTAP2-3P0C7H8 128 aa7.42□□□□□ -1.22
UPF3A-202ENST00000375299 KRTAP2-4Q9BYR9 128 aa7.42□□□□□ -1.22
UPF3A-202ENST00000375299 KRTAP2-1Q9BYU5 128 aa7.42□□□□□ -1.22
UPF3A-202ENST00000375299 KRTAP19-7Q3SYF9 63 aa7.4□□□□□ -1.23
UPF3A-202ENST00000375299 KRTAP4-7Q9BYR0 210 aa7.34□□□□□ -1.23
UPF3A-202ENST00000375299 KRTAP19-4Q3LI73 84 aa7.28□□□□□ -1.24
UPF3A-202ENST00000375299 KRTAP9-2Q9BYQ4 174 aa7.26□□□□□ -1.25
UPF3A-202ENST00000375299 LCE2DQ5TA82 110 aaPredicted RBP7.26□□□□□ -1.25
UPF3A-202ENST00000375299 FSIP2Q5CZC0 6907 aa7.25□□□□□ -1.25
UPF3A-202ENST00000375299 SSPOA2VEC9 5147 aa7.21□□□□□ -1.26
UPF3A-202ENST00000375299 MT1LQ93083 61 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms