RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 LPAP08519 4548 aa9.24□□□□□ -0.93
HLA-DQB1-201ENST00000374943 A0A1B0GU69 56 aa9.22□□□□□ -0.93
HLA-DQB1-201ENST00000374943 A6NED7 52 aa9.17□□□□□ -0.94
HLA-DQB1-201ENST00000374943 SEC61BP60468 96 aaKnown RBP9.13□□□□□ -0.95
HLA-DQB1-201ENST00000374943 SVIPQ8NHG7 77 aa9.11□□□□□ -0.95
HLA-DQB1-201ENST00000374943 CDC42SE1Q9NRR8 79 aa9.09□□□□□ -0.95
HLA-DQB1-201ENST00000374943 LCA10Q71F78 164 aa9.08□□□□□ -0.96
HLA-DQB1-201ENST00000374943 SEC61GP60059 68 aa9.07□□□□□ -0.96
HLA-DQB1-201ENST00000374943 H1FX-AS1Q4G0G2 97 aa9.06□□□□□ -0.96
HLA-DQB1-201ENST00000374943 RBM12B-AS1Q9P1G2 102 aa9.06□□□□□ -0.96
HLA-DQB1-201ENST00000374943 KRTAP3-3Q9BYR6 98 aa9.05□□□□□ -0.96
HLA-DQB1-201ENST00000374943 S4R3F8 94 aa9.05□□□□□ -0.96
HLA-DQB1-201ENST00000374943 A8MU10 97 aa9.04□□□□□ -0.96
HLA-DQB1-201ENST00000374943 MUC17Q685J3 4493 aa9.04□□□□□ -0.96
HLA-DQB1-201ENST00000374943 RNF213Q63HN8 5207 aa9.02□□□□□ -0.96
HLA-DQB1-201ENST00000374943 UQCR11O14957 56 aa9□□□□□ -0.97
HLA-DQB1-201ENST00000374943 SPATA8Q6RVD6 105 aa8.95□□□□□ -0.98
HLA-DQB1-201ENST00000374943 MIR22HGQ0VDD5 57 aa8.91□□□□□ -0.98
HLA-DQB1-201ENST00000374943 KRTAP4-1Q9BYQ7 146 aa8.91□□□□□ -0.98
HLA-DQB1-201ENST00000374943 A0A1B0GU33 70 aa8.86□□□□□ -0.99
HLA-DQB1-201ENST00000374943 KRTAP10-6P60371 365 aaPredicted RBP8.81□□□□□ -1
HLA-DQB1-201ENST00000374943 CSAG1Q6PB30 78 aa8.81□□□□□ -1
HLA-DQB1-201ENST00000374943 KRTAP3-2Q9BYR7 98 aa8.8□□□□□ -1
HLA-DQB1-201ENST00000374943 H0YAA0 97 aa8.79□□□□□ -1
HLA-DQB1-201ENST00000374943 PMAIP1Q13794 54 aa8.77□□□□□ -1.01
HLA-DQB1-201ENST00000374943 KRTAP19-2Q3LHN2 52 aa8.77□□□□□ -1.01
HLA-DQB1-201ENST00000374943 A6NN06 94 aa8.73□□□□□ -1.01
HLA-DQB1-201ENST00000374943 ADM2Q7Z4H4 148 aa8.68□□□□□ -1.02
HLA-DQB1-201ENST00000374943 P0C880 135 aa8.67□□□□□ -1.02
HLA-DQB1-201ENST00000374943 KRTAP9-2Q9BYQ4 174 aa8.65□□□□□ -1.02
HLA-DQB1-201ENST00000374943 FLGP20930 4061 aaPredicted RBP8.61□□□□□ -1.03
HLA-DQB1-201ENST00000374943 KRTAP13-4Q3LI77 160 aa8.6□□□□□ -1.03
HLA-DQB1-201ENST00000374943 MUC2Q02817 5179 aa8.55□□□□□ -1.04
HLA-DQB1-201ENST00000374943 KTN1-AS1Q86SY8 53 aa8.53□□□□□ -1.04
HLA-DQB1-201ENST00000374943 M0QZ58 72 aa8.49□□□□□ -1.05
HLA-DQB1-201ENST00000374943 LCE2AQ5TA79 106 aaPredicted RBP8.49□□□□□ -1.05
HLA-DQB1-201ENST00000374943 KRTAP9-6A0A140TA67 174 aa8.49□□□□□ -1.05
HLA-DQB1-201ENST00000374943 K7ERS5 55 aa8.45□□□□□ -1.06
HLA-DQB1-201ENST00000374943 FAT4Q6V0I7 4981 aa8.44□□□□□ -1.06
HLA-DQB1-201ENST00000374943 LCE2CQ5TA81 110 aa8.43□□□□□ -1.06
HLA-DQB1-201ENST00000374943 A0A0D9SG42 100 aa8.42□□□□□ -1.06
HLA-DQB1-201ENST00000374943 R4GN34 69 aa8.34□□□□□ -1.08
HLA-DQB1-201ENST00000374943 LORP23490 312 aaPredicted RBP8.3□□□□□ -1.08
HLA-DQB1-201ENST00000374943 KRTAP12-1P59990 96 aa8.29□□□□□ -1.08
HLA-DQB1-201ENST00000374943 KRTAP12-2P59991 146 aa8.27□□□□□ -1.08
HLA-DQB1-201ENST00000374943 MT1HP80294 61 aa8.23□□□□□ -1.09
HLA-DQB1-201ENST00000374943 SPINT4Q6UDR6 99 aa8.21□□□□□ -1.1
HLA-DQB1-201ENST00000374943 CRIPTQ9P021 101 aa8.21□□□□□ -1.1
HLA-DQB1-201ENST00000374943 PRAC1Q96KF2 57 aa8.19□□□□□ -1.1
HLA-DQB1-201ENST00000374943 LINC01554Q52M75 96 aa8.18□□□□□ -1.1
HLA-DQB1-201ENST00000374943 ROMO1P60602 79 aa8.17□□□□□ -1.1
HLA-DQB1-201ENST00000374943 LCE2DQ5TA82 110 aaPredicted RBP8.14□□□□□ -1.11
HLA-DQB1-201ENST00000374943 M0R2T5 61 aa8.12□□□□□ -1.11
HLA-DQB1-201ENST00000374943 CRCT1Q9UGL9 99 aa8.1□□□□□ -1.11
HLA-DQB1-201ENST00000374943 FSIP2Q5CZC0 6907 aa8.01□□□□□ -1.13
HLA-DQB1-201ENST00000374943 MT2AP02795 61 aa7.98□□□□□ -1.13
HLA-DQB1-201ENST00000374943 KRTAP25-1Q3LHN0 102 aa7.97□□□□□ -1.13
HLA-DQB1-201ENST00000374943 SPRR2GQ9BYE4 73 aa7.97□□□□□ -1.13
HLA-DQB1-201ENST00000374943 KRTAP9-8Q9BYQ0 159 aa7.97□□□□□ -1.13
HLA-DQB1-201ENST00000374943 MT1FP04733 61 aa7.93□□□□□ -1.14
HLA-DQB1-201ENST00000374943 KRTAP19-1Q8IUB9 90 aa7.92□□□□□ -1.14
HLA-DQB1-201ENST00000374943 KRTAP10-10P60014 251 aa7.89□□□□□ -1.15
HLA-DQB1-201ENST00000374943 CAMK2N1Q7Z7J9 78 aa7.83□□□□□ -1.16
HLA-DQB1-201ENST00000374943 C10orf95Q9H7T3 257 aa7.83□□□□□ -1.16
HLA-DQB1-201ENST00000374943 KRTAP19-8Q3LI54 63 aa7.73□□□□□ -1.17
HLA-DQB1-201ENST00000374943 PLAC4Q8WY50 150 aa7.73□□□□□ -1.17
HLA-DQB1-201ENST00000374943 KRTAP9-3Q9BYQ3 159 aa7.67□□□□□ -1.18
HLA-DQB1-201ENST00000374943 KRTAP9-7A8MTY7 169 aa7.59□□□□□ -1.19
HLA-DQB1-201ENST00000374943 MT1BP07438 61 aa7.59□□□□□ -1.19
HLA-DQB1-201ENST00000374943 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.57□□□□□ -1.2
HLA-DQB1-201ENST00000374943 TNP1P09430 55 aa7.52□□□□□ -1.21
HLA-DQB1-201ENST00000374943 PP632Q6XCG6 107 aa7.48□□□□□ -1.21
HLA-DQB1-201ENST00000374943 KRTAP23-1A1A580 65 aa7.44□□□□□ -1.22
HLA-DQB1-201ENST00000374943 LCE2BO14633 110 aa7.41□□□□□ -1.22
HLA-DQB1-201ENST00000374943 MT1XP80297 61 aa7.4□□□□□ -1.23
HLA-DQB1-201ENST00000374943 SSPOA2VEC9 5147 aa7.39□□□□□ -1.23
HLA-DQB1-201ENST00000374943 KRTAP10-5P60370 271 aa7.39□□□□□ -1.23
HLA-DQB1-201ENST00000374943 USH2AO75445 5202 aa7.37□□□□□ -1.23
HLA-DQB1-201ENST00000374943 FCGBPQ9Y6R7 5405 aaPredicted RBP7.28□□□□□ -1.24
HLA-DQB1-201ENST00000374943 PRO2289Q9P1D8 64 aa7.27□□□□□ -1.25
HLA-DQB1-201ENST00000374943 LCE3AQ5TA76 89 aa7.16□□□□□ -1.26
HLA-DQB1-201ENST00000374943 MACF1Q9UPN3 7388 aaKnown RBP7.15□□□□□ -1.27
HLA-DQB1-201ENST00000374943 KRTAP15-1Q3LI76 137 aa7.12□□□□□ -1.27
HLA-DQB1-201ENST00000374943 SYNE2Q8WXH0 6885 aaKnown RBP7.1□□□□□ -1.27
HLA-DQB1-201ENST00000374943 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
HLA-DQB1-201ENST00000374943 KRTAP10-12P60413 245 aa7.1□□□□□ -1.27
HLA-DQB1-201ENST00000374943 KRTAP8-1Q8IUC2 63 aa7.06□□□□□ -1.28
HLA-DQB1-201ENST00000374943 KRTAP19-6Q3LI70 58 aa7.02□□□□□ -1.29
HLA-DQB1-201ENST00000374943 KRTAP6-3Q3LI67 103 aa6.93□□□□□ -1.3
HLA-DQB1-201ENST00000374943 KRTAP12-3P60328 96 aa6.87□□□□□ -1.31
HLA-DQB1-201ENST00000374943 SPRR5A0A1B0GTR4 108 aa6.77□□□□□ -1.32
HLA-DQB1-201ENST00000374943 NEBP20929 6669 aa6.76□□□□□ -1.33
HLA-DQB1-201ENST00000374943 KRTAP4-8A0A0G2JLE6 195 aa6.73□□□□□ -1.33
HLA-DQB1-201ENST00000374943 KRTAP19-5Q3LI72 72 aa6.73□□□□□ -1.33
HLA-DQB1-201ENST00000374943 KRTAP4-8Q9BYQ9 185 aa6.73□□□□□ -1.33
HLA-DQB1-201ENST00000374943 KMT2DO14686 5537 aa6.69□□□□□ -1.34
HLA-DQB1-201ENST00000374943 NDUFAF8A1L188 74 aa6.65□□□□□ -1.34
HLA-DQB1-201ENST00000374943 LOC100996750A0A140TA64 210 aa6.62□□□□□ -1.35
HLA-DQB1-201ENST00000374943 KRTAP20-1Q3LI63 56 aa6.62□□□□□ -1.35
HLA-DQB1-201ENST00000374943 KRTAP4-6Q9BYQ5 205 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms