RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 DMBT1Q9UGM3 2413 aaPredicted RBP8.44□□□□□ -1.06
SDC4-201ENST00000372733 H3BS24 57 aa8.44□□□□□ -1.06
SDC4-201ENST00000372733 KRTAP13-4Q3LI77 160 aa8.44□□□□□ -1.06
SDC4-201ENST00000372733 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
SDC4-201ENST00000372733 HSPG2P98160 4391 aa8.42□□□□□ -1.06
SDC4-201ENST00000372733 A0A0D9SG42 100 aa8.41□□□□□ -1.06
SDC4-201ENST00000372733 ROMO1P60602 79 aa8.41□□□□□ -1.06
SDC4-201ENST00000372733 TNXBP22105 4242 aa8.39□□□□□ -1.07
SDC4-201ENST00000372733 KRTAP10-8P60410 259 aa8.38□□□□□ -1.07
SDC4-201ENST00000372733 RYR3Q15413 4870 aa8.38□□□□□ -1.07
SDC4-201ENST00000372733 RPL37P61927 97 aaKnown RBP8.38□□□□□ -1.07
SDC4-201ENST00000372733 KRTAP3-2Q9BYR7 98 aa8.38□□□□□ -1.07
SDC4-201ENST00000372733 MYCBP2O75592 4640 aa8.34□□□□□ -1.07
SDC4-201ENST00000372733 S4R3F8 94 aa8.33□□□□□ -1.08
SDC4-201ENST00000372733 XP32Q5T750 250 aa8.3□□□□□ -1.08
SDC4-201ENST00000372733 P0C880 135 aa8.29□□□□□ -1.08
SDC4-201ENST00000372733 TPRXLQ17RH7 258 aa8.24□□□□□ -1.09
SDC4-201ENST00000372733 Q5VSD8 79 aa8.2□□□□□ -1.1
SDC4-201ENST00000372733 C10orf95Q9H7T3 257 aa8.2□□□□□ -1.1
SDC4-201ENST00000372733 KRTAP12-2P59991 146 aa8.16□□□□□ -1.1
SDC4-201ENST00000372733 KIAA1109Q2LD37 5005 aa8.16□□□□□ -1.1
SDC4-201ENST00000372733 EPPK1P58107 5090 aaKnown RBP8.11□□□□□ -1.11
SDC4-201ENST00000372733 SPINT4Q6UDR6 99 aa8.1□□□□□ -1.11
SDC4-201ENST00000372733 LPAP08519 4548 aa8.1□□□□□ -1.11
SDC4-201ENST00000372733 KRTAP17-1Q9BYP8 105 aa8.08□□□□□ -1.12
SDC4-201ENST00000372733 KRTAP12-1P59990 96 aa8.08□□□□□ -1.12
SDC4-201ENST00000372733 RYR1P21817 5038 aa8.07□□□□□ -1.12
SDC4-201ENST00000372733 MT1HL1P0DM35 61 aa8.01□□□□□ -1.13
SDC4-201ENST00000372733 LRP2P98164 4655 aa8□□□□□ -1.13
SDC4-201ENST00000372733 M0QZ58 72 aa7.92□□□□□ -1.14
SDC4-201ENST00000372733 KRTAP15-1Q3LI76 137 aa7.91□□□□□ -1.14
SDC4-201ENST00000372733 NDUFAF8A1L188 74 aa7.83□□□□□ -1.16
SDC4-201ENST00000372733 ABCA13Q86UQ4 5058 aa7.79□□□□□ -1.16
SDC4-201ENST00000372733 KRTAP4-5Q9BYR2 181 aa7.79□□□□□ -1.16
SDC4-201ENST00000372733 R4GN34 69 aa7.74□□□□□ -1.17
SDC4-201ENST00000372733 LORP23490 312 aaPredicted RBP7.68□□□□□ -1.18
SDC4-201ENST00000372733 MUC17Q685J3 4493 aa7.63□□□□□ -1.19
SDC4-201ENST00000372733 HERC2O95714 4834 aa7.58□□□□□ -1.2
SDC4-201ENST00000372733 KRTAP4-1Q9BYQ7 146 aa7.56□□□□□ -1.2
SDC4-201ENST00000372733 SEC61BP60468 96 aaKnown RBP7.54□□□□□ -1.2
SDC4-201ENST00000372733 PLAC4Q8WY50 150 aa7.47□□□□□ -1.21
SDC4-201ENST00000372733 J3QL48 77 aa7.45□□□□□ -1.22
SDC4-201ENST00000372733 KRTAP19-2Q3LHN2 52 aa7.41□□□□□ -1.22
SDC4-201ENST00000372733 BIRC6Q9NR09 4857 aa7.4□□□□□ -1.22
SDC4-201ENST00000372733 CAMK2N1Q7Z7J9 78 aa7.39□□□□□ -1.23
SDC4-201ENST00000372733 MUC2Q02817 5179 aa7.38□□□□□ -1.23
SDC4-201ENST00000372733 HERC1Q15751 4861 aa7.35□□□□□ -1.23
SDC4-201ENST00000372733 PCLOQ9Y6V0 5065 aa7.34□□□□□ -1.23
SDC4-201ENST00000372733 PP632Q6XCG6 107 aa7.3□□□□□ -1.24
SDC4-201ENST00000372733 FLGP20930 4061 aaPredicted RBP7.21□□□□□ -1.26
SDC4-201ENST00000372733 LUZP6Q538Z0 58 aa7.15□□□□□ -1.26
SDC4-201ENST00000372733 TNP1P09430 55 aa7.1□□□□□ -1.27
SDC4-201ENST00000372733 HMCN2Q8NDA2 5059 aa7.08□□□□□ -1.28
SDC4-201ENST00000372733 RNF213Q63HN8 5207 aa7.03□□□□□ -1.28
SDC4-201ENST00000372733 FAT4Q6V0I7 4981 aa7□□□□□ -1.29
SDC4-201ENST00000372733 UBR4Q5T4S7 5183 aa6.97□□□□□ -1.29
SDC4-201ENST00000372733 KRTAP23-1A1A580 65 aa6.97□□□□□ -1.29
SDC4-201ENST00000372733 SPRR5A0A1B0GTR4 108 aa6.92□□□□□ -1.3
SDC4-201ENST00000372733 A0A0A0MQY5 61 aa6.9□□□□□ -1.3
SDC4-201ENST00000372733 LCE2CQ5TA81 110 aa6.89□□□□□ -1.31
SDC4-201ENST00000372733 KRTAP19-1Q8IUB9 90 aa6.86□□□□□ -1.31
SDC4-201ENST00000372733 SPRR2GQ9BYE4 73 aa6.86□□□□□ -1.31
SDC4-201ENST00000372733 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
SDC4-201ENST00000372733 M0R2T5 61 aa6.75□□□□□ -1.33
SDC4-201ENST00000372733 LCE2DQ5TA82 110 aaPredicted RBP6.72□□□□□ -1.33
SDC4-201ENST00000372733 MT1HP80294 61 aa6.68□□□□□ -1.34
SDC4-201ENST00000372733 MT1FP04733 61 aa6.67□□□□□ -1.34
SDC4-201ENST00000372733 MT2AP02795 61 aa6.64□□□□□ -1.35
SDC4-201ENST00000372733 KRTAP10-10P60014 251 aa6.64□□□□□ -1.35
SDC4-201ENST00000372733 KRTAP9-8Q9BYQ0 159 aa6.55□□□□□ -1.36
SDC4-201ENST00000372733 KRTAP8-1Q8IUC2 63 aa6.54□□□□□ -1.36
SDC4-201ENST00000372733 KRTAP19-8Q3LI54 63 aa6.52□□□□□ -1.37
SDC4-201ENST00000372733 KRTAP10-5P60370 271 aa6.49□□□□□ -1.37
SDC4-201ENST00000372733 MT1XP80297 61 aa6.48□□□□□ -1.37
SDC4-201ENST00000372733 MT1BP07438 61 aa6.48□□□□□ -1.37
SDC4-201ENST00000372733 KRTAP10-12P60413 245 aa6.41□□□□□ -1.38
SDC4-201ENST00000372733 KRTAP12-3P60328 96 aa6.4□□□□□ -1.38
SDC4-201ENST00000372733 KRTAP10-7P60409 375 aaPredicted RBP6.34□□□□□ -1.39
SDC4-201ENST00000372733 KRTAP9-3Q9BYQ3 159 aa6.26□□□□□ -1.41
SDC4-201ENST00000372733 PRO2289Q9P1D8 64 aa6.25□□□□□ -1.41
SDC4-201ENST00000372733 INE1O15225 51 aa6.19□□□□□ -1.42
SDC4-201ENST00000372733 USH2AO75445 5202 aa6.17□□□□□ -1.42
SDC4-201ENST00000372733 KRTAP19-5Q3LI72 72 aa6.1□□□□□ -1.43
SDC4-201ENST00000372733 LCE3CQ5T5A8 94 aa6.02□□□□□ -1.45
SDC4-201ENST00000372733 LCE2BO14633 110 aa6.01□□□□□ -1.45
SDC4-201ENST00000372733 KMT2DO14686 5537 aa6□□□□□ -1.45
SDC4-201ENST00000372733 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
SDC4-201ENST00000372733 KRTAP4-8A0A0G2JLE6 195 aa5.93□□□□□ -1.46
SDC4-201ENST00000372733 KRTAP4-8Q9BYQ9 185 aa5.93□□□□□ -1.46
SDC4-201ENST00000372733 LCE2AQ5TA79 106 aaPredicted RBP5.92□□□□□ -1.46
SDC4-201ENST00000372733 KRTAP9-6A8MVA2 160 aa5.89□□□□□ -1.47
SDC4-201ENST00000372733 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
SDC4-201ENST00000372733 KRTAP19-7Q3SYF9 63 aa5.77□□□□□ -1.49
SDC4-201ENST00000372733 KRTAP2-3P0C7H8 128 aa5.68□□□□□ -1.5
SDC4-201ENST00000372733 KRTAP2-4Q9BYR9 128 aa5.68□□□□□ -1.5
SDC4-201ENST00000372733 KRTAP2-1Q9BYU5 128 aa5.68□□□□□ -1.5
SDC4-201ENST00000372733 SSPOA2VEC9 5147 aa5.66□□□□□ -1.5
SDC4-201ENST00000372733 MT1LQ93083 61 aa5.61□□□□□ -1.51
SDC4-201ENST00000372733 MT1EP04732 61 aa5.59□□□□□ -1.52
SDC4-201ENST00000372733 KRTAP19-4Q3LI73 84 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms