RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 TPRXLQ17RH7 258 aa10.62□□□□□ -0.71
RUNX3-202ENST00000338888 KRTAP13-4Q3LI77 160 aa10.62□□□□□ -0.71
RUNX3-202ENST00000338888 SPINT4Q6UDR6 99 aa10.61□□□□□ -0.71
RUNX3-202ENST00000338888 RYR3Q15413 4870 aa10.6□□□□□ -0.71
RUNX3-202ENST00000338888 KRTAP10-6P60371 365 aaPredicted RBP10.6□□□□□ -0.71
RUNX3-202ENST00000338888 DMBT1Q9UGM3 2413 aaPredicted RBP10.58□□□□□ -0.72
RUNX3-202ENST00000338888 C10orf95Q9H7T3 257 aa10.54□□□□□ -0.72
RUNX3-202ENST00000338888 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
RUNX3-202ENST00000338888 KRTAP10-4P60372 401 aaPredicted RBP10.51□□□□□ -0.73
RUNX3-202ENST00000338888 KRTAP3-2Q9BYR7 98 aa10.48□□□□□ -0.73
RUNX3-202ENST00000338888 PKHD1L1Q86WI1 4243 aa10.46□□□□□ -0.74
RUNX3-202ENST00000338888 NDUFAF8A1L188 74 aa10.37□□□□□ -0.75
RUNX3-202ENST00000338888 HSPG2P98160 4391 aa10.36□□□□□ -0.75
RUNX3-202ENST00000338888 KRTAP15-1Q3LI76 137 aa10.35□□□□□ -0.75
RUNX3-202ENST00000338888 S4R3F8 94 aa10.34□□□□□ -0.75
RUNX3-202ENST00000338888 Q5VSD8 79 aa10.33□□□□□ -0.76
RUNX3-202ENST00000338888 KRTAP12-2P59991 146 aa10.32□□□□□ -0.76
RUNX3-202ENST00000338888 LRP1Q07954 4544 aaKnown RBP10.3□□□□□ -0.76
RUNX3-202ENST00000338888 KRTAP10-8P60410 259 aa10.3□□□□□ -0.76
RUNX3-202ENST00000338888 KIAA1109Q2LD37 5005 aa10.27□□□□□ -0.77
RUNX3-202ENST00000338888 RYR1P21817 5038 aa10.26□□□□□ -0.77
RUNX3-202ENST00000338888 KRTAP17-1Q9BYP8 105 aa10.26□□□□□ -0.77
RUNX3-202ENST00000338888 EPPK1P58107 5090 aaKnown RBP10.24□□□□□ -0.77
RUNX3-202ENST00000338888 FAT3Q8TDW7 4589 aa10.18□□□□□ -0.78
RUNX3-202ENST00000338888 KRTAP12-1P59990 96 aa10.17□□□□□ -0.78
RUNX3-202ENST00000338888 TNXBP22105 4242 aa10.14□□□□□ -0.79
RUNX3-202ENST00000338888 MYCBP2O75592 4640 aa10.11□□□□□ -0.79
RUNX3-202ENST00000338888 XP32Q5T750 250 aa10.07□□□□□ -0.8
RUNX3-202ENST00000338888 MT1HL1P0DM35 61 aa9.93□□□□□ -0.82
RUNX3-202ENST00000338888 M0QZ58 72 aa9.92□□□□□ -0.82
RUNX3-202ENST00000338888 KRTAP4-5Q9BYR2 181 aa9.92□□□□□ -0.82
RUNX3-202ENST00000338888 LPAP08519 4548 aa9.83□□□□□ -0.84
RUNX3-202ENST00000338888 ABCA13Q86UQ4 5058 aa9.71□□□□□ -0.85
RUNX3-202ENST00000338888 PLAC4Q8WY50 150 aa9.68□□□□□ -0.86
RUNX3-202ENST00000338888 R4GN34 69 aa9.65□□□□□ -0.86
RUNX3-202ENST00000338888 LRP2P98164 4655 aa9.63□□□□□ -0.87
RUNX3-202ENST00000338888 HERC2O95714 4834 aa9.61□□□□□ -0.87
RUNX3-202ENST00000338888 J3QL48 77 aa9.57□□□□□ -0.88
RUNX3-202ENST00000338888 BIRC6Q9NR09 4857 aa9.56□□□□□ -0.88
RUNX3-202ENST00000338888 LORP23490 312 aaPredicted RBP9.49□□□□□ -0.89
RUNX3-202ENST00000338888 LUZP6Q538Z0 58 aa9.45□□□□□ -0.9
RUNX3-202ENST00000338888 A0A0A0MQY5 61 aa9.44□□□□□ -0.9
RUNX3-202ENST00000338888 PCLOQ9Y6V0 5065 aa9.28□□□□□ -0.92
RUNX3-202ENST00000338888 PP632Q6XCG6 107 aa9.26□□□□□ -0.93
RUNX3-202ENST00000338888 CAMK2N1Q7Z7J9 78 aa9.24□□□□□ -0.93
RUNX3-202ENST00000338888 HERC1Q15751 4861 aa9.22□□□□□ -0.93
RUNX3-202ENST00000338888 SEC61BP60468 96 aaKnown RBP9.2□□□□□ -0.94
RUNX3-202ENST00000338888 KRTAP4-1Q9BYQ7 146 aa9.13□□□□□ -0.95
RUNX3-202ENST00000338888 MUC17Q685J3 4493 aa9.12□□□□□ -0.95
RUNX3-202ENST00000338888 MUC2Q02817 5179 aa9.08□□□□□ -0.96
RUNX3-202ENST00000338888 HMCN2Q8NDA2 5059 aa9□□□□□ -0.97
RUNX3-202ENST00000338888 TNP1P09430 55 aa8.91□□□□□ -0.98
RUNX3-202ENST00000338888 KRTAP19-2Q3LHN2 52 aa8.89□□□□□ -0.99
RUNX3-202ENST00000338888 SPRR5A0A1B0GTR4 108 aa8.84□□□□□ -0.99
RUNX3-202ENST00000338888 KRTAP23-1A1A580 65 aa8.77□□□□□ -1.01
RUNX3-202ENST00000338888 UBR4Q5T4S7 5183 aa8.72□□□□□ -1.01
RUNX3-202ENST00000338888 RNF213Q63HN8 5207 aa8.69□□□□□ -1.02
RUNX3-202ENST00000338888 FAT4Q6V0I7 4981 aa8.66□□□□□ -1.02
RUNX3-202ENST00000338888 FLGP20930 4061 aaPredicted RBP8.64□□□□□ -1.03
RUNX3-202ENST00000338888 LCE2CQ5TA81 110 aa8.52□□□□□ -1.05
RUNX3-202ENST00000338888 M0R2T5 61 aa8.43□□□□□ -1.06
RUNX3-202ENST00000338888 LCE3AQ5TA76 89 aa8.42□□□□□ -1.06
RUNX3-202ENST00000338888 PRO2289Q9P1D8 64 aa8.36□□□□□ -1.07
RUNX3-202ENST00000338888 MT1HP80294 61 aa8.35□□□□□ -1.07
RUNX3-202ENST00000338888 SPRR2GQ9BYE4 73 aa8.33□□□□□ -1.08
RUNX3-202ENST00000338888 KRTAP19-1Q8IUB9 90 aa8.31□□□□□ -1.08
RUNX3-202ENST00000338888 INE1O15225 51 aa8.17□□□□□ -1.1
RUNX3-202ENST00000338888 KRTAP8-1Q8IUC2 63 aa8.13□□□□□ -1.11
RUNX3-202ENST00000338888 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
RUNX3-202ENST00000338888 MT2AP02795 61 aa8.09□□□□□ -1.11
RUNX3-202ENST00000338888 MT1FP04733 61 aa8.09□□□□□ -1.11
RUNX3-202ENST00000338888 KRTAP9-8Q9BYQ0 159 aa8.07□□□□□ -1.12
RUNX3-202ENST00000338888 KRTAP12-3P60328 96 aa7.97□□□□□ -1.13
RUNX3-202ENST00000338888 KRTAP10-5P60370 271 aa7.9□□□□□ -1.14
RUNX3-202ENST00000338888 KRTAP10-12P60413 245 aa7.88□□□□□ -1.15
RUNX3-202ENST00000338888 MT1XP80297 61 aa7.87□□□□□ -1.15
RUNX3-202ENST00000338888 KRTAP19-8Q3LI54 63 aa7.84□□□□□ -1.15
RUNX3-202ENST00000338888 MT1BP07438 61 aa7.8□□□□□ -1.16
RUNX3-202ENST00000338888 KRTAP10-7P60409 375 aaPredicted RBP7.75□□□□□ -1.17
RUNX3-202ENST00000338888 KRTAP9-3Q9BYQ3 159 aa7.75□□□□□ -1.17
RUNX3-202ENST00000338888 LCE2AQ5TA79 106 aaPredicted RBP7.73□□□□□ -1.17
RUNX3-202ENST00000338888 USH2AO75445 5202 aa7.56□□□□□ -1.2
RUNX3-202ENST00000338888 LCE2BO14633 110 aa7.55□□□□□ -1.2
RUNX3-202ENST00000338888 LCE3CQ5T5A8 94 aa7.52□□□□□ -1.21
RUNX3-202ENST00000338888 KRTAP19-5Q3LI72 72 aa7.49□□□□□ -1.21
RUNX3-202ENST00000338888 KRTAP9-6A8MVA2 160 aa7.36□□□□□ -1.23
RUNX3-202ENST00000338888 KMT2DO14686 5537 aa7.34□□□□□ -1.23
RUNX3-202ENST00000338888 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 FSIP2Q5CZC0 6907 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-3P0C7H8 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-4Q9BYR9 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-1Q9BYU5 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP4-7Q9BYR0 210 aa7.15□□□□□ -1.26
RUNX3-202ENST00000338888 SSPOA2VEC9 5147 aa7.1□□□□□ -1.27
RUNX3-202ENST00000338888 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
RUNX3-202ENST00000338888 KRTAP19-6Q3LI70 58 aa6.88□□□□□ -1.31
RUNX3-202ENST00000338888 MT1LQ93083 61 aa6.83□□□□□ -1.32
RUNX3-202ENST00000338888 LCE2DQ5TA82 110 aaPredicted RBP6.82□□□□□ -1.32
RUNX3-202ENST00000338888 MT1EP04732 61 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms