RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 H0YAA0 97 aa10.51□□□□□ -0.73
SOX2-201ENST00000325404 A0A1B0GU33 70 aa10.51□□□□□ -0.73
SOX2-201ENST00000325404 TNXBP22105 4242 aa10.49□□□□□ -0.73
SOX2-201ENST00000325404 H1FX-AS1Q4G0G2 97 aa10.48□□□□□ -0.73
SOX2-201ENST00000325404 FAT3Q8TDW7 4589 aa10.44□□□□□ -0.74
SOX2-201ENST00000325404 DMBT1Q9UGM3 2413 aaPredicted RBP10.39□□□□□ -0.75
SOX2-201ENST00000325404 MT1HL1P0DM35 61 aa10.36□□□□□ -0.75
SOX2-201ENST00000325404 MYCBP2O75592 4640 aa10.34□□□□□ -0.75
SOX2-201ENST00000325404 CSAG1Q6PB30 78 aa10.34□□□□□ -0.75
SOX2-201ENST00000325404 RPL37P61927 97 aaKnown RBP10.31□□□□□ -0.76
SOX2-201ENST00000325404 KRTAP4-5Q9BYR2 181 aa10.24□□□□□ -0.77
SOX2-201ENST00000325404 K7ERS5 55 aa10.23□□□□□ -0.77
SOX2-201ENST00000325404 BIRC6Q9NR09 4857 aa10.23□□□□□ -0.77
SOX2-201ENST00000325404 KRTAP3-3Q9BYR6 98 aa10.22□□□□□ -0.77
SOX2-201ENST00000325404 XP32Q5T750 250 aa10.2□□□□□ -0.78
SOX2-201ENST00000325404 KRTAP10-6P60371 365 aaPredicted RBP10.16□□□□□ -0.78
SOX2-201ENST00000325404 KRTAP25-1Q3LHN0 102 aa10.14□□□□□ -0.79
SOX2-201ENST00000325404 S4R3F8 94 aa10.12□□□□□ -0.79
SOX2-201ENST00000325404 KRTAP3-2Q9BYR7 98 aa10.09□□□□□ -0.79
SOX2-201ENST00000325404 ABCA13Q86UQ4 5058 aa10.03□□□□□ -0.8
SOX2-201ENST00000325404 ROMO1P60602 79 aa10.02□□□□□ -0.81
SOX2-201ENST00000325404 HERC2O95714 4834 aa10□□□□□ -0.81
SOX2-201ENST00000325404 TPRXLQ17RH7 258 aa9.99□□□□□ -0.81
SOX2-201ENST00000325404 KRTAP13-4Q3LI77 160 aa9.99□□□□□ -0.81
SOX2-201ENST00000325404 J3QL48 77 aa9.97□□□□□ -0.81
SOX2-201ENST00000325404 P0C880 135 aa9.88□□□□□ -0.83
SOX2-201ENST00000325404 A0A0D9SG42 100 aa9.86□□□□□ -0.83
SOX2-201ENST00000325404 LRP2P98164 4655 aa9.79□□□□□ -0.84
SOX2-201ENST00000325404 LPAP08519 4548 aa9.76□□□□□ -0.85
SOX2-201ENST00000325404 CRIPTQ9P021 101 aa9.76□□□□□ -0.85
SOX2-201ENST00000325404 PCLOQ9Y6V0 5065 aa9.73□□□□□ -0.85
SOX2-201ENST00000325404 M0QZ58 72 aa9.73□□□□□ -0.85
SOX2-201ENST00000325404 KRTAP12-2P59991 146 aa9.68□□□□□ -0.86
SOX2-201ENST00000325404 KRTAP12-1P59990 96 aa9.66□□□□□ -0.86
SOX2-201ENST00000325404 SEC61BP60468 96 aaKnown RBP9.65□□□□□ -0.86
SOX2-201ENST00000325404 SPINT4Q6UDR6 99 aa9.56□□□□□ -0.88
SOX2-201ENST00000325404 A0A0A0MQY5 61 aa9.5□□□□□ -0.89
SOX2-201ENST00000325404 C10orf95Q9H7T3 257 aa9.47□□□□□ -0.89
SOX2-201ENST00000325404 HERC1Q15751 4861 aa9.44□□□□□ -0.9
SOX2-201ENST00000325404 KRTAP4-1Q9BYQ7 146 aa9.42□□□□□ -0.9
SOX2-201ENST00000325404 MUC17Q685J3 4493 aa9.39□□□□□ -0.91
SOX2-201ENST00000325404 HMCN2Q8NDA2 5059 aa9.37□□□□□ -0.91
SOX2-201ENST00000325404 NDUFAF8A1L188 74 aa9.37□□□□□ -0.91
SOX2-201ENST00000325404 R4GN34 69 aa9.37□□□□□ -0.91
SOX2-201ENST00000325404 KRTAP15-1Q3LI76 137 aa9.26□□□□□ -0.93
SOX2-201ENST00000325404 KRTAP19-2Q3LHN2 52 aa9.19□□□□□ -0.94
SOX2-201ENST00000325404 LORP23490 312 aaPredicted RBP9.16□□□□□ -0.94
SOX2-201ENST00000325404 MUC2Q02817 5179 aa9.14□□□□□ -0.95
SOX2-201ENST00000325404 FLGP20930 4061 aaPredicted RBP9□□□□□ -0.97
SOX2-201ENST00000325404 UBR4Q5T4S7 5183 aa8.94□□□□□ -0.98
SOX2-201ENST00000325404 PP632Q6XCG6 107 aa8.93□□□□□ -0.98
SOX2-201ENST00000325404 RNF213Q63HN8 5207 aa8.92□□□□□ -0.98
SOX2-201ENST00000325404 LUZP6Q538Z0 58 aa8.91□□□□□ -0.98
SOX2-201ENST00000325404 LCE2CQ5TA81 110 aa8.88□□□□□ -0.99
SOX2-201ENST00000325404 CAMK2N1Q7Z7J9 78 aa8.88□□□□□ -0.99
SOX2-201ENST00000325404 PLAC4Q8WY50 150 aa8.84□□□□□ -0.99
SOX2-201ENST00000325404 FAT4Q6V0I7 4981 aa8.75□□□□□ -1.01
SOX2-201ENST00000325404 KRTAP23-1A1A580 65 aa8.7□□□□□ -1.02
SOX2-201ENST00000325404 MT1HP80294 61 aa8.7□□□□□ -1.02
SOX2-201ENST00000325404 M0R2T5 61 aa8.69□□□□□ -1.02
SOX2-201ENST00000325404 TNP1P09430 55 aa8.62□□□□□ -1.03
SOX2-201ENST00000325404 SPRR2GQ9BYE4 73 aa8.54□□□□□ -1.04
SOX2-201ENST00000325404 MT2AP02795 61 aa8.42□□□□□ -1.06
SOX2-201ENST00000325404 KRTAP19-1Q8IUB9 90 aa8.42□□□□□ -1.06
SOX2-201ENST00000325404 KRTAP9-8Q9BYQ0 159 aa8.41□□□□□ -1.06
SOX2-201ENST00000325404 KRTAP10-10P60014 251 aa8.39□□□□□ -1.07
SOX2-201ENST00000325404 MT1FP04733 61 aa8.39□□□□□ -1.07
SOX2-201ENST00000325404 SPRR5A0A1B0GTR4 108 aa8.32□□□□□ -1.08
SOX2-201ENST00000325404 KRTAP19-8Q3LI54 63 aa8.17□□□□□ -1.1
SOX2-201ENST00000325404 LCE2AQ5TA79 106 aaPredicted RBP8.15□□□□□ -1.1
SOX2-201ENST00000325404 KRTAP9-3Q9BYQ3 159 aa8.09□□□□□ -1.11
SOX2-201ENST00000325404 LCE3AQ5TA76 89 aa8.09□□□□□ -1.11
SOX2-201ENST00000325404 KRTAP8-1Q8IUC2 63 aa8.01□□□□□ -1.13
SOX2-201ENST00000325404 MT1BP07438 61 aa7.98□□□□□ -1.13
SOX2-201ENST00000325404 KRTAP10-5P60370 271 aa7.95□□□□□ -1.14
SOX2-201ENST00000325404 MT1XP80297 61 aa7.93□□□□□ -1.14
SOX2-201ENST00000325404 LCE2BO14633 110 aa7.83□□□□□ -1.16
SOX2-201ENST00000325404 KRTAP10-12P60413 245 aa7.8□□□□□ -1.16
SOX2-201ENST00000325404 PRO2289Q9P1D8 64 aa7.78□□□□□ -1.16
SOX2-201ENST00000325404 KRTAP12-3P60328 96 aa7.75□□□□□ -1.17
SOX2-201ENST00000325404 KRTAP10-7P60409 375 aaPredicted RBP7.66□□□□□ -1.18
SOX2-201ENST00000325404 USH2AO75445 5202 aa7.61□□□□□ -1.19
SOX2-201ENST00000325404 KRTAP9-2Q9BYQ4 174 aa7.54□□□□□ -1.2
SOX2-201ENST00000325404 INE1O15225 51 aa7.47□□□□□ -1.21
SOX2-201ENST00000325404 LCE2DQ5TA82 110 aaPredicted RBP7.43□□□□□ -1.22
SOX2-201ENST00000325404 KRTAP19-5Q3LI72 72 aa7.37□□□□□ -1.23
SOX2-201ENST00000325404 FSIP2Q5CZC0 6907 aa7.35□□□□□ -1.23
SOX2-201ENST00000325404 SSPOA2VEC9 5147 aa7.32□□□□□ -1.24
SOX2-201ENST00000325404 LCE3CQ5T5A8 94 aa7.32□□□□□ -1.24
SOX2-201ENST00000325404 KRTAP19-6Q3LI70 58 aa7.27□□□□□ -1.25
SOX2-201ENST00000325404 KRTAP9-6A0A140TA67 174 aa7.19□□□□□ -1.26
SOX2-201ENST00000325404 KRTAP19-4Q3LI73 84 aa7.17□□□□□ -1.26
SOX2-201ENST00000325404 CRCT1Q9UGL9 99 aa7.16□□□□□ -1.26
SOX2-201ENST00000325404 KRTAP4-8A0A0G2JLE6 195 aa7.15□□□□□ -1.27
SOX2-201ENST00000325404 KRTAP4-8Q9BYQ9 185 aa7.15□□□□□ -1.27
SOX2-201ENST00000325404 KMT2DO14686 5537 aa7.13□□□□□ -1.27
SOX2-201ENST00000325404 KRTAP19-7Q3SYF9 63 aa7.07□□□□□ -1.28
SOX2-201ENST00000325404 KRTAP9-6A8MVA2 160 aa6.97□□□□□ -1.29
SOX2-201ENST00000325404 FCGBPQ9Y6R7 5405 aaPredicted RBP6.96□□□□□ -1.3
SOX2-201ENST00000325404 MT1LQ93083 61 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms