RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 KRTAP10-8P60410 259 aa9.77□□□□□ -0.85
RTN4-201ENST00000317610 ROMO1P60602 79 aa9.77□□□□□ -0.85
RTN4-201ENST00000317610 LRP1Q07954 4544 aaKnown RBP9.76□□□□□ -0.85
RTN4-201ENST00000317610 KRTAP13-4Q3LI77 160 aa9.76□□□□□ -0.85
RTN4-201ENST00000317610 HSPG2P98160 4391 aa9.73□□□□□ -0.85
RTN4-201ENST00000317610 RYR2Q92736 4967 aa9.73□□□□□ -0.85
RTN4-201ENST00000317610 CRIPTQ9P021 101 aa9.71□□□□□ -0.86
RTN4-201ENST00000317610 S4R3F8 94 aa9.71□□□□□ -0.86
RTN4-201ENST00000317610 XP32Q5T750 250 aa9.69□□□□□ -0.86
RTN4-201ENST00000317610 DMBT1Q9UGM3 2413 aaPredicted RBP9.64□□□□□ -0.87
RTN4-201ENST00000317610 A0A0D9SG42 100 aa9.63□□□□□ -0.87
RTN4-201ENST00000317610 H3BS24 57 aa9.63□□□□□ -0.87
RTN4-201ENST00000317610 P0C880 135 aa9.59□□□□□ -0.87
RTN4-201ENST00000317610 KMT2CQ8NEZ4 4911 aaKnown RBP9.58□□□□□ -0.88
RTN4-201ENST00000317610 Q5VSD8 79 aa9.55□□□□□ -0.88
RTN4-201ENST00000317610 TPRXLQ17RH7 258 aa9.53□□□□□ -0.88
RTN4-201ENST00000317610 MYCBP2O75592 4640 aa9.51□□□□□ -0.89
RTN4-201ENST00000317610 KRTAP12-2P59991 146 aa9.45□□□□□ -0.9
RTN4-201ENST00000317610 RYR3Q15413 4870 aa9.42□□□□□ -0.9
RTN4-201ENST00000317610 RYR1P21817 5038 aa9.4□□□□□ -0.9
RTN4-201ENST00000317610 KRTAP12-1P59990 96 aa9.39□□□□□ -0.91
RTN4-201ENST00000317610 MT1HL1P0DM35 61 aa9.38□□□□□ -0.91
RTN4-201ENST00000317610 C10orf95Q9H7T3 257 aa9.38□□□□□ -0.91
RTN4-201ENST00000317610 KRTAP17-1Q9BYP8 105 aa9.35□□□□□ -0.91
RTN4-201ENST00000317610 M0QZ58 72 aa9.32□□□□□ -0.92
RTN4-201ENST00000317610 SPINT4Q6UDR6 99 aa9.31□□□□□ -0.92
RTN4-201ENST00000317610 LPAP08519 4548 aa9.27□□□□□ -0.93
RTN4-201ENST00000317610 KRTAP15-1Q3LI76 137 aa9.21□□□□□ -0.94
RTN4-201ENST00000317610 LRP2P98164 4655 aa9.21□□□□□ -0.94
RTN4-201ENST00000317610 KIAA1109Q2LD37 5005 aa9.13□□□□□ -0.95
RTN4-201ENST00000317610 EPPK1P58107 5090 aaKnown RBP9.09□□□□□ -0.95
RTN4-201ENST00000317610 R4GN34 69 aa8.99□□□□□ -0.97
RTN4-201ENST00000317610 NDUFAF8A1L188 74 aa8.96□□□□□ -0.97
RTN4-201ENST00000317610 MUC17Q685J3 4493 aa8.93□□□□□ -0.98
RTN4-201ENST00000317610 ABCA13Q86UQ4 5058 aa8.89□□□□□ -0.99
RTN4-201ENST00000317610 SEC61BP60468 96 aaKnown RBP8.88□□□□□ -0.99
RTN4-201ENST00000317610 BIRC6Q9NR09 4857 aa8.87□□□□□ -0.99
RTN4-201ENST00000317610 LORP23490 312 aaPredicted RBP8.86□□□□□ -0.99
RTN4-201ENST00000317610 KRTAP4-1Q9BYQ7 146 aa8.78□□□□□ -1
RTN4-201ENST00000317610 KRTAP4-5Q9BYR2 181 aa8.75□□□□□ -1.01
RTN4-201ENST00000317610 KRTAP19-2Q3LHN2 52 aa8.72□□□□□ -1.01
RTN4-201ENST00000317610 PLAC4Q8WY50 150 aa8.68□□□□□ -1.02
RTN4-201ENST00000317610 HERC2O95714 4834 aa8.63□□□□□ -1.03
RTN4-201ENST00000317610 PP632Q6XCG6 107 aa8.61□□□□□ -1.03
RTN4-201ENST00000317610 CAMK2N1Q7Z7J9 78 aa8.54□□□□□ -1.04
RTN4-201ENST00000317610 J3QL48 77 aa8.48□□□□□ -1.05
RTN4-201ENST00000317610 PCLOQ9Y6V0 5065 aa8.45□□□□□ -1.06
RTN4-201ENST00000317610 FLGP20930 4061 aaPredicted RBP8.45□□□□□ -1.06
RTN4-201ENST00000317610 HERC1Q15751 4861 aa8.4□□□□□ -1.06
RTN4-201ENST00000317610 KRTAP23-1A1A580 65 aa8.33□□□□□ -1.08
RTN4-201ENST00000317610 TNP1P09430 55 aa8.29□□□□□ -1.08
RTN4-201ENST00000317610 LUZP6Q538Z0 58 aa8.29□□□□□ -1.08
RTN4-201ENST00000317610 MUC2Q02817 5179 aa8.22□□□□□ -1.09
RTN4-201ENST00000317610 SPRR5A0A1B0GTR4 108 aa8.15□□□□□ -1.1
RTN4-201ENST00000317610 SPRR2GQ9BYE4 73 aa8.09□□□□□ -1.11
RTN4-201ENST00000317610 LCE2CQ5TA81 110 aa8.08□□□□□ -1.12
RTN4-201ENST00000317610 KRTAP19-1Q8IUB9 90 aa8.02□□□□□ -1.13
RTN4-201ENST00000317610 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
RTN4-201ENST00000317610 HMCN2Q8NDA2 5059 aa7.99□□□□□ -1.13
RTN4-201ENST00000317610 FAT4Q6V0I7 4981 aa7.87□□□□□ -1.15
RTN4-201ENST00000317610 LCE3AQ5TA76 89 aa7.83□□□□□ -1.16
RTN4-201ENST00000317610 MT1HP80294 61 aa7.82□□□□□ -1.16
RTN4-201ENST00000317610 M0R2T5 61 aa7.79□□□□□ -1.16
RTN4-201ENST00000317610 MT1FP04733 61 aa7.77□□□□□ -1.17
RTN4-201ENST00000317610 MT2AP02795 61 aa7.76□□□□□ -1.17
RTN4-201ENST00000317610 KRTAP19-8Q3LI54 63 aa7.72□□□□□ -1.17
RTN4-201ENST00000317610 KRTAP10-10P60014 251 aa7.71□□□□□ -1.18
RTN4-201ENST00000317610 KRTAP8-1Q8IUC2 63 aa7.69□□□□□ -1.18
RTN4-201ENST00000317610 KRTAP9-8Q9BYQ0 159 aa7.69□□□□□ -1.18
RTN4-201ENST00000317610 UBR4Q5T4S7 5183 aa7.66□□□□□ -1.18
RTN4-201ENST00000317610 RNF213Q63HN8 5207 aa7.66□□□□□ -1.18
RTN4-201ENST00000317610 KRTAP10-5P60370 271 aa7.59□□□□□ -1.19
RTN4-201ENST00000317610 MT1BP07438 61 aa7.58□□□□□ -1.2
RTN4-201ENST00000317610 MT1XP80297 61 aa7.57□□□□□ -1.2
RTN4-201ENST00000317610 KRTAP10-12P60413 245 aa7.46□□□□□ -1.21
RTN4-201ENST00000317610 KRTAP12-3P60328 96 aa7.46□□□□□ -1.22
RTN4-201ENST00000317610 KRTAP9-3Q9BYQ3 159 aa7.36□□□□□ -1.23
RTN4-201ENST00000317610 KRTAP10-7P60409 375 aaPredicted RBP7.35□□□□□ -1.23
RTN4-201ENST00000317610 PRO2289Q9P1D8 64 aa7.3□□□□□ -1.24
RTN4-201ENST00000317610 INE1O15225 51 aa7.29□□□□□ -1.24
RTN4-201ENST00000317610 KRTAP19-5Q3LI72 72 aa7.08□□□□□ -1.28
RTN4-201ENST00000317610 LCE3CQ5T5A8 94 aa7.05□□□□□ -1.28
RTN4-201ENST00000317610 LCE2BO14633 110 aa7.01□□□□□ -1.29
RTN4-201ENST00000317610 LCE2AQ5TA79 106 aaPredicted RBP6.93□□□□□ -1.3
RTN4-201ENST00000317610 KRTAP4-8A0A0G2JLE6 195 aa6.82□□□□□ -1.32
RTN4-201ENST00000317610 KRTAP4-8Q9BYQ9 185 aa6.82□□□□□ -1.32
RTN4-201ENST00000317610 KRTAP9-6A8MVA2 160 aa6.81□□□□□ -1.32
RTN4-201ENST00000317610 KMT2DO14686 5537 aa6.77□□□□□ -1.32
RTN4-201ENST00000317610 KRTAP19-7Q3SYF9 63 aa6.75□□□□□ -1.33
RTN4-201ENST00000317610 USH2AO75445 5202 aa6.74□□□□□ -1.33
RTN4-201ENST00000317610 KRTAP19-4Q3LI73 84 aa6.7□□□□□ -1.34
RTN4-201ENST00000317610 KRTAP2-3P0C7H8 128 aa6.68□□□□□ -1.34
RTN4-201ENST00000317610 KRTAP2-4Q9BYR9 128 aa6.68□□□□□ -1.34
RTN4-201ENST00000317610 KRTAP2-1Q9BYU5 128 aa6.68□□□□□ -1.34
RTN4-201ENST00000317610 KRTAP4-7Q9BYR0 210 aa6.6□□□□□ -1.35
RTN4-201ENST00000317610 MT1LQ93083 61 aa6.56□□□□□ -1.36
RTN4-201ENST00000317610 KRTAP9-2Q9BYQ4 174 aa6.54□□□□□ -1.36
RTN4-201ENST00000317610 MT1EP04732 61 aa6.54□□□□□ -1.36
RTN4-201ENST00000317610 FSIP2Q5CZC0 6907 aa6.45□□□□□ -1.38
RTN4-201ENST00000317610 LCE2DQ5TA82 110 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms