RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HIST1H4AP62805 103 aaKnown RBP8.73□□□□□ -1.01
LIME1-201ENST00000309546 KRTAP19-8Q3LI54 63 aa8.73□□□□□ -1.01
LIME1-201ENST00000309546 KRTAP3-3Q9BYR6 98 aa8.73□□□□□ -1.01
LIME1-201ENST00000309546 LOC101927531A0A1B0GV80 90 aa8.71□□□□□ -1.02
LIME1-201ENST00000309546 A0A087WVE0 104 aa8.7□□□□□ -1.02
LIME1-201ENST00000309546 NEBP20929 6669 aa8.65□□□□□ -1.03
LIME1-201ENST00000309546 H0Y9P7 68 aa8.61□□□□□ -1.03
LIME1-201ENST00000309546 UQCRQO14949 82 aa8.6□□□□□ -1.03
LIME1-201ENST00000309546 KRTAP10-5P60370 271 aa8.6□□□□□ -1.03
LIME1-201ENST00000309546 ATOX1O00244 68 aa8.58□□□□□ -1.04
LIME1-201ENST00000309546 IMUPQ9GZP8 106 aa8.58□□□□□ -1.04
LIME1-201ENST00000309546 CRIPTQ9P021 101 aa8.58□□□□□ -1.04
LIME1-201ENST00000309546 MT-ATP8P03928 68 aa8.56□□□□□ -1.04
LIME1-201ENST00000309546 NDUFC1O43677 76 aa8.55□□□□□ -1.04
LIME1-201ENST00000309546 MUC12Q9UKN1 5478 aa8.5□□□□□ -1.05
LIME1-201ENST00000309546 H0YAA0 97 aa8.46□□□□□ -1.06
LIME1-201ENST00000309546 SCGB1A1P11684 91 aa8.46□□□□□ -1.06
LIME1-201ENST00000309546 LINC00208Q96KT6 92 aa8.46□□□□□ -1.06
LIME1-201ENST00000309546 A8MUN3 132 aa8.45□□□□□ -1.06
LIME1-201ENST00000309546 ADM2Q7Z4H4 148 aa8.43□□□□□ -1.06
LIME1-201ENST00000309546 OCR1Q9BZK8 76 aa8.43□□□□□ -1.06
LIME1-201ENST00000309546 MP68P56378 58 aa8.39□□□□□ -1.07
LIME1-201ENST00000309546 SMIM20Q8N5G0 67 aa8.35□□□□□ -1.07
LIME1-201ENST00000309546 KRTAP5-9P26371 169 aa8.34□□□□□ -1.07
LIME1-201ENST00000309546 H3BPC8 53 aa8.29□□□□□ -1.08
LIME1-201ENST00000309546 TRAV7A0A075B6U4 112 aa8.28□□□□□ -1.08
LIME1-201ENST00000309546 KRTAP20-1Q3LI63 56 aa8.28□□□□□ -1.08
LIME1-201ENST00000309546 KMT2DO14686 5537 aa8.26□□□□□ -1.09
LIME1-201ENST00000309546 PRO2289Q9P1D8 64 aa8.25□□□□□ -1.09
LIME1-201ENST00000309546 MDN1Q9NU22 5596 aa8.24□□□□□ -1.09
LIME1-201ENST00000309546 PLAC4Q8WY50 150 aa8.23□□□□□ -1.09
LIME1-201ENST00000309546 R4GN34 69 aa8.23□□□□□ -1.09
LIME1-201ENST00000309546 P0C880 135 aa8.21□□□□□ -1.1
LIME1-201ENST00000309546 MT1XP80297 61 aa8.21□□□□□ -1.1
LIME1-201ENST00000309546 C20orf197Q8N268 126 aa8.19□□□□□ -1.1
LIME1-201ENST00000309546 DMAC1Q96GE9 116 aa8.18□□□□□ -1.1
LIME1-201ENST00000309546 M0QZ58 72 aa8.17□□□□□ -1.1
LIME1-201ENST00000309546 SERP2Q8N6R1 65 aa8.17□□□□□ -1.1
LIME1-201ENST00000309546 SPRR2FQ96RM1 72 aa8.12□□□□□ -1.11
LIME1-201ENST00000309546 LINC01554Q52M75 96 aa8.09□□□□□ -1.11
LIME1-201ENST00000309546 KRTAP3-2Q9BYR7 98 aa8.07□□□□□ -1.12
LIME1-201ENST00000309546 KRTAP8-1Q8IUC2 63 aa8.05□□□□□ -1.12
LIME1-201ENST00000309546 SNURFQ9Y675 71 aa8.05□□□□□ -1.12
LIME1-201ENST00000309546 COX7CP15954 63 aa8.04□□□□□ -1.12
LIME1-201ENST00000309546 SPRR2EP22531 72 aa8.04□□□□□ -1.12
LIME1-201ENST00000309546 SPRR2BP35325 72 aa8.04□□□□□ -1.12
LIME1-201ENST00000309546 SPRR2AP35326 72 aa8.04□□□□□ -1.12
LIME1-201ENST00000309546 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
LIME1-201ENST00000309546 ANAPC13Q9BS18 74 aa7.99□□□□□ -1.13
LIME1-201ENST00000309546 KRTAP2-3P0C7H8 128 aa7.97□□□□□ -1.13
LIME1-201ENST00000309546 ACYP2P14621 99 aa7.97□□□□□ -1.13
LIME1-201ENST00000309546 KRTAP2-4Q9BYR9 128 aa7.97□□□□□ -1.13
LIME1-201ENST00000309546 SPANXA2-OT1Q8N9U9 137 aa7.92□□□□□ -1.14
LIME1-201ENST00000309546 KRTAP4-8A0A0G2JLE6 195 aa7.91□□□□□ -1.14
LIME1-201ENST00000309546 SPTSSBQ8NFR3 76 aa7.91□□□□□ -1.14
LIME1-201ENST00000309546 KRTAP4-8Q9BYQ9 185 aa7.91□□□□□ -1.14
LIME1-201ENST00000309546 CHKB-CPT1BH3BT56 60 aa7.87□□□□□ -1.15
LIME1-201ENST00000309546 LCE1AQ5T7P2 110 aa7.87□□□□□ -1.15
LIME1-201ENST00000309546 KRTAP10-7P60409 375 aaPredicted RBP7.85□□□□□ -1.15
LIME1-201ENST00000309546 H7BZZ5 65 aa7.81□□□□□ -1.16
LIME1-201ENST00000309546 CCDC179H3BU77 68 aa7.8□□□□□ -1.16
LIME1-201ENST00000309546 CYSTM1Q9H1C7 97 aa7.8□□□□□ -1.16
LIME1-201ENST00000309546 SPRR2DP22532 72 aa7.78□□□□□ -1.16
LIME1-201ENST00000309546 KRTAP10-12P60413 245 aa7.77□□□□□ -1.17
LIME1-201ENST00000309546 KRTAP2-2Q9BYT5 123 aa7.71□□□□□ -1.18
LIME1-201ENST00000309546 KRTAP2-1Q9BYU5 128 aa7.71□□□□□ -1.18
LIME1-201ENST00000309546 COA5Q86WW8 74 aa7.64□□□□□ -1.19
LIME1-201ENST00000309546 KRTAP13-4Q3LI77 160 aa7.61□□□□□ -1.19
LIME1-201ENST00000309546 ATP5EP56381 51 aaPredicted RBP7.6□□□□□ -1.19
LIME1-201ENST00000309546 CAMK2N1Q7Z7J9 78 aa7.57□□□□□ -1.2
LIME1-201ENST00000309546 TMEM258P61165 79 aa7.56□□□□□ -1.2
LIME1-201ENST00000309546 LCE3BQ5TA77 95 aa7.56□□□□□ -1.2
LIME1-201ENST00000309546 PCP4P48539 62 aa7.43□□□□□ -1.22
LIME1-201ENST00000309546 A0A0D9SG42 100 aa7.42□□□□□ -1.22
LIME1-201ENST00000309546 SEC61GP60059 68 aa7.41□□□□□ -1.22
LIME1-201ENST00000309546 SERP1Q9Y6X1 66 aa7.4□□□□□ -1.22
LIME1-201ENST00000309546 SPATA8Q6RVD6 105 aa7.35□□□□□ -1.23
LIME1-201ENST00000309546 KRTAP19-7Q3SYF9 63 aa7.32□□□□□ -1.24
LIME1-201ENST00000309546 SPINT4Q6UDR6 99 aa7.32□□□□□ -1.24
LIME1-201ENST00000309546 A0A1B0GU33 70 aa7.28□□□□□ -1.24
LIME1-201ENST00000309546 MT1EP04732 61 aa7.28□□□□□ -1.24
LIME1-201ENST00000309546 DSTQ03001 7570 aaKnown RBP7.27□□□□□ -1.24
LIME1-201ENST00000309546 A0A1B0GU69 56 aa7.26□□□□□ -1.25
LIME1-201ENST00000309546 LCE5AQ5TCM9 118 aa7.26□□□□□ -1.25
LIME1-201ENST00000309546 KRTAP19-3Q7Z4W3 81 aa7.24□□□□□ -1.25
LIME1-201ENST00000309546 LINC01558Q9Y6Z2 57 aa7.21□□□□□ -1.26
LIME1-201ENST00000309546 KRTAP12-1P59990 96 aa7.2□□□□□ -1.26
LIME1-201ENST00000309546 PRR15LQ9BU68 103 aa7.19□□□□□ -1.26
LIME1-201ENST00000309546 GPR98Q8WXG9 6306 aa7.15□□□□□ -1.27
LIME1-201ENST00000309546 KRTAP19-5Q3LI72 72 aa7.14□□□□□ -1.27
LIME1-201ENST00000309546 RPS28P62857 69 aaKnown RBP7.1□□□□□ -1.27
LIME1-201ENST00000309546 V9GYY9 64 aa7.09□□□□□ -1.27
LIME1-201ENST00000309546 SMIM26A0A096LP01 95 aa7.08□□□□□ -1.28
LIME1-201ENST00000309546 KRTAP4-9Q9BYQ8 210 aa7.08□□□□□ -1.28
LIME1-201ENST00000309546 A8MU10 97 aa7.05□□□□□ -1.28
LIME1-201ENST00000309546 Q1T7F1 81 aa7.05□□□□□ -1.28
LIME1-201ENST00000309546 MT1GP13640 62 aa7.04□□□□□ -1.28
LIME1-201ENST00000309546 PP632Q6XCG6 107 aa7.01□□□□□ -1.29
LIME1-201ENST00000309546 UQCR11O14957 56 aa6.96□□□□□ -1.3
LIME1-201ENST00000309546 MT1MQ8N339 61 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms