RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 LCA10Q71F78 164 aa11.74□□□□□ -0.53
PDLIM2-202ENST00000308354 KTN1-AS1Q86SY8 53 aa11.72□□□□□ -0.53
PDLIM2-202ENST00000308354 A0A1B0GU69 56 aa11.68□□□□□ -0.54
PDLIM2-202ENST00000308354 CDC42SE1Q9NRR8 79 aa11.67□□□□□ -0.54
PDLIM2-202ENST00000308354 COX6B2Q6YFQ2 88 aa11.6□□□□□ -0.55
PDLIM2-202ENST00000308354 SPTSSBQ8NFR3 76 aa11.6□□□□□ -0.55
PDLIM2-202ENST00000308354 PCLOQ9Y6V0 5065 aa11.58□□□□□ -0.56
PDLIM2-202ENST00000308354 RBM12B-AS1Q9P1G2 102 aa11.56□□□□□ -0.56
PDLIM2-202ENST00000308354 A6NN06 94 aa11.5□□□□□ -0.57
PDLIM2-202ENST00000308354 HERC1Q15751 4861 aa11.42□□□□□ -0.58
PDLIM2-202ENST00000308354 UQCR11O14957 56 aa11.4□□□□□ -0.58
PDLIM2-202ENST00000308354 SEC61BP60468 96 aaKnown RBP11.36□□□□□ -0.59
PDLIM2-202ENST00000308354 SPATA8Q6RVD6 105 aa11.35□□□□□ -0.59
PDLIM2-202ENST00000308354 MIR22HGQ0VDD5 57 aa11.34□□□□□ -0.59
PDLIM2-202ENST00000308354 KRTAP4-1Q9BYQ7 146 aa11.27□□□□□ -0.61
PDLIM2-202ENST00000308354 KRTAP3-3Q9BYR6 98 aa11.27□□□□□ -0.61
PDLIM2-202ENST00000308354 S4R3F8 94 aa11.23□□□□□ -0.61
PDLIM2-202ENST00000308354 H1FX-AS1Q4G0G2 97 aa11.22□□□□□ -0.61
PDLIM2-202ENST00000308354 MUC17Q685J3 4493 aa11.21□□□□□ -0.62
PDLIM2-202ENST00000308354 HMCN2Q8NDA2 5059 aa11.2□□□□□ -0.62
PDLIM2-202ENST00000308354 A0A1B0GU33 70 aa11.17□□□□□ -0.62
PDLIM2-202ENST00000308354 H0YAA0 97 aa11.15□□□□□ -0.62
PDLIM2-202ENST00000308354 MUC2Q02817 5179 aa11.14□□□□□ -0.63
PDLIM2-202ENST00000308354 KRTAP10-6P60371 365 aaPredicted RBP11.03□□□□□ -0.64
PDLIM2-202ENST00000308354 KRTAP3-2Q9BYR7 98 aa11□□□□□ -0.65
PDLIM2-202ENST00000308354 LINC01554Q52M75 96 aa10.94□□□□□ -0.66
PDLIM2-202ENST00000308354 KRTAP19-2Q3LHN2 52 aa10.93□□□□□ -0.66
PDLIM2-202ENST00000308354 CSAG1Q6PB30 78 aa10.92□□□□□ -0.66
PDLIM2-202ENST00000308354 P0C880 135 aa10.89□□□□□ -0.67
PDLIM2-202ENST00000308354 PRAC1Q96KF2 57 aa10.89□□□□□ -0.67
PDLIM2-202ENST00000308354 ADM2Q7Z4H4 148 aa10.88□□□□□ -0.67
PDLIM2-202ENST00000308354 KRTAP13-4Q3LI77 160 aa10.86□□□□□ -0.67
PDLIM2-202ENST00000308354 UBR4Q5T4S7 5183 aa10.81□□□□□ -0.68
PDLIM2-202ENST00000308354 H3BS24 57 aa10.81□□□□□ -0.68
PDLIM2-202ENST00000308354 A0A0D9SG42 100 aa10.73□□□□□ -0.69
PDLIM2-202ENST00000308354 RNF213Q63HN8 5207 aa10.71□□□□□ -0.69
PDLIM2-202ENST00000308354 K7ERS5 55 aa10.66□□□□□ -0.7
PDLIM2-202ENST00000308354 FLGP20930 4061 aaPredicted RBP10.64□□□□□ -0.71
PDLIM2-202ENST00000308354 FAT4Q6V0I7 4981 aa10.62□□□□□ -0.71
PDLIM2-202ENST00000308354 LCE2CQ5TA81 110 aa10.6□□□□□ -0.71
PDLIM2-202ENST00000308354 M0QZ58 72 aa10.52□□□□□ -0.73
PDLIM2-202ENST00000308354 LORP23490 312 aaPredicted RBP10.47□□□□□ -0.73
PDLIM2-202ENST00000308354 KRTAP12-2P59991 146 aa10.46□□□□□ -0.73
PDLIM2-202ENST00000308354 KRTAP12-1P59990 96 aa10.41□□□□□ -0.74
PDLIM2-202ENST00000308354 R4GN34 69 aa10.39□□□□□ -0.75
PDLIM2-202ENST00000308354 SPINT4Q6UDR6 99 aa10.39□□□□□ -0.75
PDLIM2-202ENST00000308354 ROMO1P60602 79 aa10.36□□□□□ -0.75
PDLIM2-202ENST00000308354 MT1HP80294 61 aa10.36□□□□□ -0.75
PDLIM2-202ENST00000308354 KRTAP25-1Q3LHN0 102 aa10.36□□□□□ -0.75
PDLIM2-202ENST00000308354 M0R2T5 61 aa10.34□□□□□ -0.75
PDLIM2-202ENST00000308354 CRIPTQ9P021 101 aa10.27□□□□□ -0.77
PDLIM2-202ENST00000308354 MT2AP02795 61 aa10.01□□□□□ -0.81
PDLIM2-202ENST00000308354 KRTAP9-8Q9BYQ0 159 aa10.01□□□□□ -0.81
PDLIM2-202ENST00000308354 MT1FP04733 61 aa9.99□□□□□ -0.81
PDLIM2-202ENST00000308354 C10orf95Q9H7T3 257 aa9.99□□□□□ -0.81
PDLIM2-202ENST00000308354 KRTAP10-10P60014 251 aa9.97□□□□□ -0.81
PDLIM2-202ENST00000308354 KRTAP19-1Q8IUB9 90 aa9.89□□□□□ -0.83
PDLIM2-202ENST00000308354 SPRR2GQ9BYE4 73 aa9.86□□□□□ -0.83
PDLIM2-202ENST00000308354 CAMK2N1Q7Z7J9 78 aa9.8□□□□□ -0.84
PDLIM2-202ENST00000308354 LCE2AQ5TA79 106 aaPredicted RBP9.73□□□□□ -0.85
PDLIM2-202ENST00000308354 KRTAP9-3Q9BYQ3 159 aa9.63□□□□□ -0.87
PDLIM2-202ENST00000308354 PLAC4Q8WY50 150 aa9.62□□□□□ -0.87
PDLIM2-202ENST00000308354 KRTAP19-8Q3LI54 63 aa9.54□□□□□ -0.88
PDLIM2-202ENST00000308354 MT1BP07438 61 aa9.48□□□□□ -0.89
PDLIM2-202ENST00000308354 KRTAP15-1Q3LI76 137 aa9.47□□□□□ -0.89
PDLIM2-202ENST00000308354 NDUFAF8A1L188 74 aa9.41□□□□□ -0.9
PDLIM2-202ENST00000308354 LCE2BO14633 110 aa9.37□□□□□ -0.91
PDLIM2-202ENST00000308354 TNP1P09430 55 aa9.37□□□□□ -0.91
PDLIM2-202ENST00000308354 PP632Q6XCG6 107 aa9.32□□□□□ -0.92
PDLIM2-202ENST00000308354 USH2AO75445 5202 aa9.25□□□□□ -0.93
PDLIM2-202ENST00000308354 MT1XP80297 61 aa9.24□□□□□ -0.93
PDLIM2-202ENST00000308354 KRTAP10-5P60370 271 aa9.24□□□□□ -0.93
PDLIM2-202ENST00000308354 A0A0A0MQY5 61 aa9.23□□□□□ -0.93
PDLIM2-202ENST00000308354 KRTAP23-1A1A580 65 aa9.13□□□□□ -0.95
PDLIM2-202ENST00000308354 PRO2289Q9P1D8 64 aa9□□□□□ -0.97
PDLIM2-202ENST00000308354 LUZP6Q538Z0 58 aa8.96□□□□□ -0.97
PDLIM2-202ENST00000308354 LCE3AQ5TA76 89 aa8.96□□□□□ -0.97
PDLIM2-202ENST00000308354 KRTAP10-7P60409 375 aaPredicted RBP8.95□□□□□ -0.98
PDLIM2-202ENST00000308354 FSIP2Q5CZC0 6907 aa8.87□□□□□ -0.99
PDLIM2-202ENST00000308354 KRTAP10-12P60413 245 aa8.82□□□□□ -1
PDLIM2-202ENST00000308354 SSPOA2VEC9 5147 aa8.79□□□□□ -1
PDLIM2-202ENST00000308354 KRTAP8-1Q8IUC2 63 aa8.72□□□□□ -1.01
PDLIM2-202ENST00000308354 KMT2DO14686 5537 aa8.68□□□□□ -1.02
PDLIM2-202ENST00000308354 LCE2DQ5TA82 110 aaPredicted RBP8.64□□□□□ -1.03
PDLIM2-202ENST00000308354 KRTAP19-6Q3LI70 58 aa8.62□□□□□ -1.03
PDLIM2-202ENST00000308354 KRTAP4-8A0A0G2JLE6 195 aa8.59□□□□□ -1.03
PDLIM2-202ENST00000308354 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
PDLIM2-202ENST00000308354 KRTAP12-3P60328 96 aa8.55□□□□□ -1.04
PDLIM2-202ENST00000308354 SPRR5A0A1B0GTR4 108 aa8.53□□□□□ -1.04
PDLIM2-202ENST00000308354 KRTAP19-5Q3LI72 72 aa8.44□□□□□ -1.06
PDLIM2-202ENST00000308354 FCGBPQ9Y6R7 5405 aaPredicted RBP8.36□□□□□ -1.07
PDLIM2-202ENST00000308354 KRTAP9-2Q9BYQ4 174 aa8.31□□□□□ -1.08
PDLIM2-202ENST00000308354 KRTAP19-7Q3SYF9 63 aa8.25□□□□□ -1.09
PDLIM2-202ENST00000308354 MT1EP04732 61 aa8.06□□□□□ -1.12
PDLIM2-202ENST00000308354 CRCT1Q9UGL9 99 aa8.03□□□□□ -1.12
PDLIM2-202ENST00000308354 LCE3CQ5T5A8 94 aa8.02□□□□□ -1.13
PDLIM2-202ENST00000308354 MACF1Q9UPN3 7388 aaKnown RBP7.97□□□□□ -1.13
PDLIM2-202ENST00000308354 MT1LQ93083 61 aa7.94□□□□□ -1.14
PDLIM2-202ENST00000308354 KRTAP4-7Q9BYR0 210 aa7.9□□□□□ -1.15
PDLIM2-202ENST00000308354 MUC12Q9UKN1 5478 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms