RNA–Protein interactions for RNA: ENST00000305866.9

VPS50-202, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS50, Length 3,613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-202ENST00000305866 KRTAP13-4Q3LI77 160 aa2.86□□□□□ -1.95
VPS50-202ENST00000305866 KRTAP17-1Q9BYP8 105 aa2.85□□□□□ -1.95
VPS50-202ENST00000305866 RETNLBQ9BQ08 111 aa2.84□□□□□ -1.95
VPS50-202ENST00000305866 P0C880 135 aa2.83□□□□□ -1.96
VPS50-202ENST00000305866 RYR1P21817 5038 aa2.83□□□□□ -1.96
VPS50-202ENST00000305866 KRTAP25-1Q3LHN0 102 aa2.83□□□□□ -1.96
VPS50-202ENST00000305866 FLGP20930 4061 aaPredicted RBP2.81□□□□□ -1.96
VPS50-202ENST00000305866 ABCA13Q86UQ4 5058 aa2.81□□□□□ -1.96
VPS50-202ENST00000305866 LRP2P98164 4655 aa2.8□□□□□ -1.96
VPS50-202ENST00000305866 H1FX-AS1Q4G0G2 97 aa2.8□□□□□ -1.96
VPS50-202ENST00000305866 COX6B2Q6YFQ2 88 aa2.8□□□□□ -1.96
VPS50-202ENST00000305866 Q8N1X5 172 aa2.8□□□□□ -1.96
VPS50-202ENST00000305866 TPRXLQ17RH7 258 aa2.78□□□□□ -1.96
VPS50-202ENST00000305866 RPL37P61927 97 aaKnown RBP2.78□□□□□ -1.96
VPS50-202ENST00000305866 FLG2Q5D862 2391 aaPredicted RBP2.77□□□□□ -1.97
VPS50-202ENST00000305866 ROMO1P60602 79 aa2.77□□□□□ -1.97
VPS50-202ENST00000305866 XP32Q5T750 250 aa2.76□□□□□ -1.97
VPS50-202ENST00000305866 KRTAP15-1Q3LI76 137 aa2.75□□□□□ -1.97
VPS50-202ENST00000305866 MT1HL1P0DM35 61 aa2.75□□□□□ -1.97
VPS50-202ENST00000305866 H3BS24 57 aa2.74□□□□□ -1.97
VPS50-202ENST00000305866 A0A1B0GU33 70 aa2.73□□□□□ -1.97
VPS50-202ENST00000305866 EPPK1P58107 5090 aaKnown RBP2.7□□□□□ -1.98
VPS50-202ENST00000305866 KRTAP12-2P59991 146 aa2.7□□□□□ -1.98
VPS50-202ENST00000305866 KRTAP19-2Q3LHN2 52 aa2.7□□□□□ -1.98
VPS50-202ENST00000305866 C9orf92A6NGG3 77 aa2.68□□□□□ -1.98
VPS50-202ENST00000305866 KRTAP12-1P59990 96 aa2.68□□□□□ -1.98
VPS50-202ENST00000305866 SMR3BP02814 79 aaPredicted RBP2.67□□□□□ -1.98
VPS50-202ENST00000305866 Q5VSD8 79 aa2.66□□□□□ -1.98
VPS50-202ENST00000305866 KIAA1109Q2LD37 5005 aa2.65□□□□□ -1.99
VPS50-202ENST00000305866 HERC1Q15751 4861 aa2.64□□□□□ -1.99
VPS50-202ENST00000305866 CRIPTQ9P021 101 aa2.64□□□□□ -1.99
VPS50-202ENST00000305866 LCE2AQ5TA79 106 aaPredicted RBP2.63□□□□□ -1.99
VPS50-202ENST00000305866 PCLOQ9Y6V0 5065 aa2.63□□□□□ -1.99
VPS50-202ENST00000305866 S4R3F8 94 aa2.63□□□□□ -1.99
VPS50-202ENST00000305866 C10orf95Q9H7T3 257 aa2.63□□□□□ -1.99
VPS50-202ENST00000305866 BIRC6Q9NR09 4857 aa2.63□□□□□ -1.99
VPS50-202ENST00000305866 LCE2BO14633 110 aa2.62□□□□□ -1.99
VPS50-202ENST00000305866 M0QZ58 72 aa2.6□□□□□ -1.99
VPS50-202ENST00000305866 LCE2CQ5TA81 110 aa2.59□□□□□ -1.99
VPS50-202ENST00000305866 LORP23490 312 aaPredicted RBP2.59□□□□□ -2
VPS50-202ENST00000305866 KRTAP4-1Q9BYQ7 146 aa2.55□□□□□ -2
VPS50-202ENST00000305866 K7ERS5 55 aa2.55□□□□□ -2
VPS50-202ENST00000305866 MUC2Q02817 5179 aa2.54□□□□□ -2
VPS50-202ENST00000305866 HERC2O95714 4834 aa2.5□□□□□ -2.01
VPS50-202ENST00000305866 SPRR5A0A1B0GTR4 108 aa2.5□□□□□ -2.01
VPS50-202ENST00000305866 KRTAP23-1A1A580 65 aa2.49□□□□□ -2.01
VPS50-202ENST00000305866 A0A0D9SG42 100 aa2.49□□□□□ -2.01
VPS50-202ENST00000305866 SEC61BP60468 96 aaKnown RBP2.49□□□□□ -2.01
VPS50-202ENST00000305866 KRTAP4-5Q9BYR2 181 aa2.47□□□□□ -2.01
VPS50-202ENST00000305866 NDUFAF8A1L188 74 aa2.46□□□□□ -2.02
VPS50-202ENST00000305866 UBR4Q5T4S7 5183 aa2.46□□□□□ -2.02
VPS50-202ENST00000305866 HMCN2Q8NDA2 5059 aa2.44□□□□□ -2.02
VPS50-202ENST00000305866 A0A0A0MQY5 61 aa2.43□□□□□ -2.02
VPS50-202ENST00000305866 PP632Q6XCG6 107 aa2.4□□□□□ -2.03
VPS50-202ENST00000305866 SPRR2GQ9BYE4 73 aa2.39□□□□□ -2.03
VPS50-202ENST00000305866 LOC100996750A0A140TA64 210 aa2.39□□□□□ -2.03
VPS50-202ENST00000305866 KRTAP4-6Q9BYQ5 205 aa2.39□□□□□ -2.03
VPS50-202ENST00000305866 FAT4Q6V0I7 4981 aa2.39□□□□□ -2.03
VPS50-202ENST00000305866 DMBT1Q9UGM3 2413 aaPredicted RBP2.39□□□□□ -2.03
VPS50-202ENST00000305866 SPINT4Q6UDR6 99 aa2.38□□□□□ -2.03
VPS50-202ENST00000305866 PLAC4Q8WY50 150 aa2.36□□□□□ -2.03
VPS50-202ENST00000305866 R4GN34 69 aa2.35□□□□□ -2.03
VPS50-202ENST00000305866 KRTAP19-1Q8IUB9 90 aa2.33□□□□□ -2.04
VPS50-202ENST00000305866 KRTAP19-8Q3LI54 63 aa2.32□□□□□ -2.04
VPS50-202ENST00000305866 RNF213Q63HN8 5207 aa2.29□□□□□ -2.04
VPS50-202ENST00000305866 KRTAP9-8Q9BYQ0 159 aa2.28□□□□□ -2.04
VPS50-202ENST00000305866 MT1HP80294 61 aa2.28□□□□□ -2.05
VPS50-202ENST00000305866 LUZP6Q538Z0 58 aa2.24□□□□□ -2.05
VPS50-202ENST00000305866 MT2AP02795 61 aa2.23□□□□□ -2.05
VPS50-202ENST00000305866 KRTAP9-6A0A140TA67 174 aa2.23□□□□□ -2.05
VPS50-202ENST00000305866 TNP1P09430 55 aa2.23□□□□□ -2.05
VPS50-202ENST00000305866 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
VPS50-202ENST00000305866 MT1FP04733 61 aa2.22□□□□□ -2.05
VPS50-202ENST00000305866 KRTAP8-1Q8IUC2 63 aa2.22□□□□□ -2.05
VPS50-202ENST00000305866 KRTAP10-5P60370 271 aa2.21□□□□□ -2.06
VPS50-202ENST00000305866 MT1BP07438 61 aa2.21□□□□□ -2.06
VPS50-202ENST00000305866 KRTAP9-3Q9BYQ3 159 aa2.19□□□□□ -2.06
VPS50-202ENST00000305866 MT1XP80297 61 aa2.19□□□□□ -2.06
VPS50-202ENST00000305866 LCE3AQ5TA76 89 aa2.18□□□□□ -2.06
VPS50-202ENST00000305866 KRTAP19-4Q3LI73 84 aa2.18□□□□□ -2.06
VPS50-202ENST00000305866 CAMK2N1Q7Z7J9 78 aa2.17□□□□□ -2.06
VPS50-202ENST00000305866 KRTAP10-7P60409 375 aaPredicted RBP2.1□□□□□ -2.07
VPS50-202ENST00000305866 KRTAP9-6A8MVA2 160 aa2.09□□□□□ -2.07
VPS50-202ENST00000305866 KRTAP9-2Q9BYQ4 174 aa2.08□□□□□ -2.08
VPS50-202ENST00000305866 KMT2DO14686 5537 aa2.07□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP10-10P60014 251 aa2.06□□□□□ -2.08
VPS50-202ENST00000305866 PRO2289Q9P1D8 64 aa2.05□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP2-3P0C7H8 128 aa2.03□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP2-4Q9BYR9 128 aa2.03□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP2-1Q9BYU5 128 aa2.03□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP12-3P60328 96 aa2.03□□□□□ -2.08
VPS50-202ENST00000305866 KRTAP4-8Q9BYQ9 185 aa2.03□□□□□ -2.09
VPS50-202ENST00000305866 USH2AO75445 5202 aa2.01□□□□□ -2.09
VPS50-202ENST00000305866 KRTAP19-5Q3LI72 72 aa2□□□□□ -2.09
VPS50-202ENST00000305866 SSPOA2VEC9 5147 aa2□□□□□ -2.09
VPS50-202ENST00000305866 INE1O15225 51 aa2□□□□□ -2.09
VPS50-202ENST00000305866 KRTAP19-7Q3SYF9 63 aa1.98□□□□□ -2.09
VPS50-202ENST00000305866 LCE3CQ5T5A8 94 aa1.98□□□□□ -2.09
VPS50-202ENST00000305866 M0R2T5 61 aa1.97□□□□□ -2.09
VPS50-202ENST00000305866 KRTAP9-7A8MTY7 169 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 394.3 ms