RNA–Protein interactions for RNA: ENST00000298454.3

VSTM4-201, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VSTM4, Length 2,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-201ENST00000298454 SEC61BP60468 96 aaKnown RBP11.51□□□□□ -0.57
VSTM4-201ENST00000298454 A6NED7 52 aa11.5□□□□□ -0.57
VSTM4-201ENST00000298454 HERC1Q15751 4861 aa11.46□□□□□ -0.57
VSTM4-201ENST00000298454 LCA10Q71F78 164 aa11.45□□□□□ -0.58
VSTM4-201ENST00000298454 A8MU10 97 aa11.44□□□□□ -0.58
VSTM4-201ENST00000298454 KRTAP3-3Q9BYR6 98 aa11.43□□□□□ -0.58
VSTM4-201ENST00000298454 RBM12B-AS1Q9P1G2 102 aa11.41□□□□□ -0.58
VSTM4-201ENST00000298454 H1FX-AS1Q4G0G2 97 aa11.41□□□□□ -0.58
VSTM4-201ENST00000298454 S4R3F8 94 aa11.4□□□□□ -0.58
VSTM4-201ENST00000298454 KRTAP4-1Q9BYQ7 146 aa11.39□□□□□ -0.59
VSTM4-201ENST00000298454 MUC17Q685J3 4493 aa11.39□□□□□ -0.59
VSTM4-201ENST00000298454 SEC61GP60059 68 aa11.37□□□□□ -0.59
VSTM4-201ENST00000298454 HMCN2Q8NDA2 5059 aa11.33□□□□□ -0.6
VSTM4-201ENST00000298454 CDC42SE1Q9NRR8 79 aa11.3□□□□□ -0.6
VSTM4-201ENST00000298454 UQCR11O14957 56 aa11.24□□□□□ -0.61
VSTM4-201ENST00000298454 MIR22HGQ0VDD5 57 aa11.17□□□□□ -0.62
VSTM4-201ENST00000298454 SPATA8Q6RVD6 105 aa11.16□□□□□ -0.62
VSTM4-201ENST00000298454 MUC2Q02817 5179 aa11.15□□□□□ -0.62
VSTM4-201ENST00000298454 A0A1B0GU33 70 aa11.12□□□□□ -0.63
VSTM4-201ENST00000298454 KRTAP10-6P60371 365 aaPredicted RBP11.1□□□□□ -0.63
VSTM4-201ENST00000298454 KRTAP19-2Q3LHN2 52 aa11.09□□□□□ -0.63
VSTM4-201ENST00000298454 CSAG1Q6PB30 78 aa11.09□□□□□ -0.63
VSTM4-201ENST00000298454 KRTAP3-2Q9BYR7 98 aa11.09□□□□□ -0.63
VSTM4-201ENST00000298454 H0YAA0 97 aa11.04□□□□□ -0.64
VSTM4-201ENST00000298454 P0C880 135 aa10.99□□□□□ -0.65
VSTM4-201ENST00000298454 ADM2Q7Z4H4 148 aa10.98□□□□□ -0.65
VSTM4-201ENST00000298454 PMAIP1Q13794 54 aa10.96□□□□□ -0.65
VSTM4-201ENST00000298454 KRTAP13-4Q3LI77 160 aa10.88□□□□□ -0.67
VSTM4-201ENST00000298454 A6NN06 94 aa10.86□□□□□ -0.67
VSTM4-201ENST00000298454 UBR4Q5T4S7 5183 aa10.84□□□□□ -0.67
VSTM4-201ENST00000298454 FLGP20930 4061 aaPredicted RBP10.78□□□□□ -0.68
VSTM4-201ENST00000298454 RNF213Q63HN8 5207 aa10.76□□□□□ -0.69
VSTM4-201ENST00000298454 LCE2CQ5TA81 110 aa10.72□□□□□ -0.69
VSTM4-201ENST00000298454 A0A0D9SG42 100 aa10.7□□□□□ -0.7
VSTM4-201ENST00000298454 FAT4Q6V0I7 4981 aa10.67□□□□□ -0.7
VSTM4-201ENST00000298454 M0QZ58 72 aa10.62□□□□□ -0.71
VSTM4-201ENST00000298454 LORP23490 312 aaPredicted RBP10.6□□□□□ -0.71
VSTM4-201ENST00000298454 KTN1-AS1Q86SY8 53 aa10.56□□□□□ -0.72
VSTM4-201ENST00000298454 R4GN34 69 aa10.54□□□□□ -0.72
VSTM4-201ENST00000298454 K7ERS5 55 aa10.53□□□□□ -0.72
VSTM4-201ENST00000298454 MT1HP80294 61 aa10.48□□□□□ -0.73
VSTM4-201ENST00000298454 KRTAP12-2P59991 146 aa10.46□□□□□ -0.74
VSTM4-201ENST00000298454 LINC01554Q52M75 96 aa10.43□□□□□ -0.74
VSTM4-201ENST00000298454 KRTAP12-1P59990 96 aa10.43□□□□□ -0.74
VSTM4-201ENST00000298454 M0R2T5 61 aa10.41□□□□□ -0.74
VSTM4-201ENST00000298454 SPINT4Q6UDR6 99 aa10.41□□□□□ -0.74
VSTM4-201ENST00000298454 PRAC1Q96KF2 57 aa10.32□□□□□ -0.76
VSTM4-201ENST00000298454 CRIPTQ9P021 101 aa10.24□□□□□ -0.77
VSTM4-201ENST00000298454 ROMO1P60602 79 aa10.2□□□□□ -0.78
VSTM4-201ENST00000298454 KRTAP9-8Q9BYQ0 159 aa10.14□□□□□ -0.79
VSTM4-201ENST00000298454 MT2AP02795 61 aa10.13□□□□□ -0.79
VSTM4-201ENST00000298454 MT1FP04733 61 aa10.1□□□□□ -0.79
VSTM4-201ENST00000298454 KRTAP10-10P60014 251 aa10.06□□□□□ -0.8
VSTM4-201ENST00000298454 SPRR2GQ9BYE4 73 aa10.03□□□□□ -0.8
VSTM4-201ENST00000298454 KRTAP19-1Q8IUB9 90 aa10.02□□□□□ -0.8
VSTM4-201ENST00000298454 KRTAP25-1Q3LHN0 102 aa9.92□□□□□ -0.82
VSTM4-201ENST00000298454 CAMK2N1Q7Z7J9 78 aa9.91□□□□□ -0.82
VSTM4-201ENST00000298454 C10orf95Q9H7T3 257 aa9.87□□□□□ -0.83
VSTM4-201ENST00000298454 LCE2AQ5TA79 106 aaPredicted RBP9.82□□□□□ -0.84
VSTM4-201ENST00000298454 PLAC4Q8WY50 150 aa9.75□□□□□ -0.85
VSTM4-201ENST00000298454 KRTAP9-3Q9BYQ3 159 aa9.74□□□□□ -0.85
VSTM4-201ENST00000298454 KRTAP19-8Q3LI54 63 aa9.71□□□□□ -0.86
VSTM4-201ENST00000298454 H3BS24 57 aa9.7□□□□□ -0.86
VSTM4-201ENST00000298454 MT1BP07438 61 aa9.61□□□□□ -0.87
VSTM4-201ENST00000298454 LCE2BO14633 110 aa9.46□□□□□ -0.89
VSTM4-201ENST00000298454 TNP1P09430 55 aa9.44□□□□□ -0.9
VSTM4-201ENST00000298454 MT1XP80297 61 aa9.37□□□□□ -0.91
VSTM4-201ENST00000298454 KRTAP10-5P60370 271 aa9.37□□□□□ -0.91
VSTM4-201ENST00000298454 PP632Q6XCG6 107 aa9.27□□□□□ -0.93
VSTM4-201ENST00000298454 USH2AO75445 5202 aa9.25□□□□□ -0.93
VSTM4-201ENST00000298454 KRTAP23-1A1A580 65 aa9.16□□□□□ -0.94
VSTM4-201ENST00000298454 PRO2289Q9P1D8 64 aa9.14□□□□□ -0.95
VSTM4-201ENST00000298454 LCE3AQ5TA76 89 aa9.07□□□□□ -0.96
VSTM4-201ENST00000298454 KRTAP10-7P60409 375 aaPredicted RBP9.06□□□□□ -0.96
VSTM4-201ENST00000298454 KRTAP10-12P60413 245 aa8.96□□□□□ -0.98
VSTM4-201ENST00000298454 KRTAP15-1Q3LI76 137 aa8.87□□□□□ -0.99
VSTM4-201ENST00000298454 SSPOA2VEC9 5147 aa8.85□□□□□ -0.99
VSTM4-201ENST00000298454 KRTAP8-1Q8IUC2 63 aa8.83□□□□□ -1
VSTM4-201ENST00000298454 FSIP2Q5CZC0 6907 aa8.81□□□□□ -1
VSTM4-201ENST00000298454 LCE2DQ5TA82 110 aaPredicted RBP8.75□□□□□ -1.01
VSTM4-201ENST00000298454 KRTAP19-6Q3LI70 58 aa8.73□□□□□ -1.01
VSTM4-201ENST00000298454 KMT2DO14686 5537 aa8.71□□□□□ -1.01
VSTM4-201ENST00000298454 KRTAP4-8A0A0G2JLE6 195 aa8.66□□□□□ -1.02
VSTM4-201ENST00000298454 KRTAP12-3P60328 96 aa8.66□□□□□ -1.02
VSTM4-201ENST00000298454 KRTAP4-8Q9BYQ9 185 aa8.66□□□□□ -1.02
VSTM4-201ENST00000298454 KRTAP19-5Q3LI72 72 aa8.55□□□□□ -1.04
VSTM4-201ENST00000298454 NDUFAF8A1L188 74 aa8.46□□□□□ -1.05
VSTM4-201ENST00000298454 FCGBPQ9Y6R7 5405 aaPredicted RBP8.41□□□□□ -1.06
VSTM4-201ENST00000298454 SPRR5A0A1B0GTR4 108 aa8.38□□□□□ -1.07
VSTM4-201ENST00000298454 KRTAP19-7Q3SYF9 63 aa8.37□□□□□ -1.07
VSTM4-201ENST00000298454 KRTAP9-2Q9BYQ4 174 aa8.32□□□□□ -1.08
VSTM4-201ENST00000298454 A0A0A0MQY5 61 aa8.23□□□□□ -1.09
VSTM4-201ENST00000298454 LUZP6Q538Z0 58 aa8.22□□□□□ -1.09
VSTM4-201ENST00000298454 MT1EP04732 61 aa8.18□□□□□ -1.1
VSTM4-201ENST00000298454 LCE3CQ5T5A8 94 aa8.11□□□□□ -1.11
VSTM4-201ENST00000298454 MT1LQ93083 61 aa8.05□□□□□ -1.12
VSTM4-201ENST00000298454 CRCT1Q9UGL9 99 aa8.05□□□□□ -1.12
VSTM4-201ENST00000298454 MACF1Q9UPN3 7388 aaKnown RBP8.03□□□□□ -1.12
VSTM4-201ENST00000298454 KRTAP4-7Q9BYR0 210 aa7.97□□□□□ -1.13
VSTM4-201ENST00000298454 MUC12Q9UKN1 5478 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms