RNA–Protein interactions for RNA: ENST00000297071.8

TRA2A-201, Transcript of transformer 2 alpha homolog, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRA2A, Length 1,845 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-201ENST00000297071 PKHD1P08F94 4074 aa10.04□□□□□ -0.8
TRA2A-201ENST00000297071 A0A1B0GVY2 172 aa9.96□□□□□ -0.81
TRA2A-201ENST00000297071 SMR3BP02814 79 aaPredicted RBP9.96□□□□□ -0.81
TRA2A-201ENST00000297071 ROMO1P60602 79 aa9.96□□□□□ -0.81
TRA2A-201ENST00000297071 KRTAP4-5Q9BYR2 181 aa9.95□□□□□ -0.82
TRA2A-201ENST00000297071 RPL37P61927 97 aaKnown RBP9.93□□□□□ -0.82
TRA2A-201ENST00000297071 DYNC1H1Q14204 4646 aaKnown RBP9.93□□□□□ -0.82
TRA2A-201ENST00000297071 KRTAP10-6P60371 365 aaPredicted RBP9.92□□□□□ -0.82
TRA2A-201ENST00000297071 HERC1Q15751 4861 aa9.92□□□□□ -0.82
TRA2A-201ENST00000297071 KRTAP3-3Q9BYR6 98 aa9.9□□□□□ -0.82
TRA2A-201ENST00000297071 H3BS24 57 aa9.89□□□□□ -0.83
TRA2A-201ENST00000297071 FLG2Q5D862 2391 aaPredicted RBP9.85□□□□□ -0.83
TRA2A-201ENST00000297071 KRTAP3-2Q9BYR7 98 aa9.84□□□□□ -0.83
TRA2A-201ENST00000297071 S4R3F8 94 aa9.78□□□□□ -0.84
TRA2A-201ENST00000297071 KRTAP10-8P60410 259 aa9.77□□□□□ -0.84
TRA2A-201ENST00000297071 KRTAP13-4Q3LI77 160 aa9.76□□□□□ -0.85
TRA2A-201ENST00000297071 TNXBP22105 4242 aa9.76□□□□□ -0.85
TRA2A-201ENST00000297071 FAT3Q8TDW7 4589 aa9.75□□□□□ -0.85
TRA2A-201ENST00000297071 FAT1Q14517 4588 aa9.73□□□□□ -0.85
TRA2A-201ENST00000297071 CRIPTQ9P021 101 aa9.68□□□□□ -0.86
TRA2A-201ENST00000297071 XP32Q5T750 250 aa9.67□□□□□ -0.86
TRA2A-201ENST00000297071 HSPG2P98160 4391 aa9.65□□□□□ -0.87
TRA2A-201ENST00000297071 LRP1Q07954 4544 aaKnown RBP9.65□□□□□ -0.87
TRA2A-201ENST00000297071 TPRXLQ17RH7 258 aa9.63□□□□□ -0.87
TRA2A-201ENST00000297071 DMBT1Q9UGM3 2413 aaPredicted RBP9.61□□□□□ -0.87
TRA2A-201ENST00000297071 A0A0D9SG42 100 aa9.61□□□□□ -0.87
TRA2A-201ENST00000297071 P0C880 135 aa9.59□□□□□ -0.87
TRA2A-201ENST00000297071 M0QZ58 72 aa9.49□□□□□ -0.89
TRA2A-201ENST00000297071 KRTAP12-1P59990 96 aa9.48□□□□□ -0.89
TRA2A-201ENST00000297071 KRTAP12-2P59991 146 aa9.48□□□□□ -0.89
TRA2A-201ENST00000297071 SPINT4Q6UDR6 99 aa9.47□□□□□ -0.89
TRA2A-201ENST00000297071 Q5VSD8 79 aa9.44□□□□□ -0.9
TRA2A-201ENST00000297071 KRTAP15-1Q3LI76 137 aa9.4□□□□□ -0.9
TRA2A-201ENST00000297071 C10orf95Q9H7T3 257 aa9.39□□□□□ -0.91
TRA2A-201ENST00000297071 MT1HL1P0DM35 61 aa9.3□□□□□ -0.92
TRA2A-201ENST00000297071 KRTAP9-6A0A140TA67 174 aa9.29□□□□□ -0.92
TRA2A-201ENST00000297071 HMCN2Q8NDA2 5059 aa9.25□□□□□ -0.93
TRA2A-201ENST00000297071 J3QL48 77 aa9.24□□□□□ -0.93
TRA2A-201ENST00000297071 MYCBP2O75592 4640 aa9.22□□□□□ -0.93
TRA2A-201ENST00000297071 KRTAP9-2Q9BYQ4 174 aa9.21□□□□□ -0.93
TRA2A-201ENST00000297071 NDUFAF8A1L188 74 aa9.1□□□□□ -0.95
TRA2A-201ENST00000297071 R4GN34 69 aa9.04□□□□□ -0.96
TRA2A-201ENST00000297071 RNF213Q63HN8 5207 aa9.04□□□□□ -0.96
TRA2A-201ENST00000297071 SEC61BP60468 96 aaKnown RBP8.93□□□□□ -0.98
TRA2A-201ENST00000297071 LRP2P98164 4655 aa8.92□□□□□ -0.98
TRA2A-201ENST00000297071 LPAP08519 4548 aa8.89□□□□□ -0.99
TRA2A-201ENST00000297071 PP632Q6XCG6 107 aa8.86□□□□□ -0.99
TRA2A-201ENST00000297071 PLAC4Q8WY50 150 aa8.84□□□□□ -0.99
TRA2A-201ENST00000297071 MUC17Q685J3 4493 aa8.79□□□□□ -1
TRA2A-201ENST00000297071 LORP23490 312 aaPredicted RBP8.77□□□□□ -1
TRA2A-201ENST00000297071 FAT4Q6V0I7 4981 aa8.73□□□□□ -1.01
TRA2A-201ENST00000297071 KRTAP19-2Q3LHN2 52 aa8.68□□□□□ -1.02
TRA2A-201ENST00000297071 MUC2Q02817 5179 aa8.64□□□□□ -1.03
TRA2A-201ENST00000297071 KRTAP4-1Q9BYQ7 146 aa8.64□□□□□ -1.03
TRA2A-201ENST00000297071 KRTAP23-1A1A580 65 aa8.62□□□□□ -1.03
TRA2A-201ENST00000297071 CAMK2N1Q7Z7J9 78 aa8.59□□□□□ -1.03
TRA2A-201ENST00000297071 CRCT1Q9UGL9 99 aa8.54□□□□□ -1.04
TRA2A-201ENST00000297071 LUZP6Q538Z0 58 aa8.52□□□□□ -1.05
TRA2A-201ENST00000297071 TNP1P09430 55 aa8.41□□□□□ -1.06
TRA2A-201ENST00000297071 LCE2AQ5TA79 106 aaPredicted RBP8.4□□□□□ -1.07
TRA2A-201ENST00000297071 SPRR5A0A1B0GTR4 108 aa8.35□□□□□ -1.07
TRA2A-201ENST00000297071 LCE2DQ5TA82 110 aaPredicted RBP8.34□□□□□ -1.07
TRA2A-201ENST00000297071 FLGP20930 4061 aaPredicted RBP8.34□□□□□ -1.07
TRA2A-201ENST00000297071 A0A0A0MQY5 61 aa8.3□□□□□ -1.08
TRA2A-201ENST00000297071 FSIP2Q5CZC0 6907 aa8.3□□□□□ -1.08
TRA2A-201ENST00000297071 KRTAP9-7A8MTY7 169 aa8.22□□□□□ -1.09
TRA2A-201ENST00000297071 SPRR2GQ9BYE4 73 aa8.15□□□□□ -1.11
TRA2A-201ENST00000297071 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.99□□□□□ -1.13
TRA2A-201ENST00000297071 LCE2CQ5TA81 110 aa7.99□□□□□ -1.13
TRA2A-201ENST00000297071 KRTAP19-1Q8IUB9 90 aa7.99□□□□□ -1.13
TRA2A-201ENST00000297071 LCE3AQ5TA76 89 aa7.83□□□□□ -1.16
TRA2A-201ENST00000297071 KRTAP8-1Q8IUC2 63 aa7.81□□□□□ -1.16
TRA2A-201ENST00000297071 KRTAP19-8Q3LI54 63 aa7.78□□□□□ -1.16
TRA2A-201ENST00000297071 MT1HP80294 61 aa7.72□□□□□ -1.17
TRA2A-201ENST00000297071 MT2AP02795 61 aa7.69□□□□□ -1.18
TRA2A-201ENST00000297071 M0R2T5 61 aa7.66□□□□□ -1.18
TRA2A-201ENST00000297071 MT1FP04733 61 aa7.66□□□□□ -1.18
TRA2A-201ENST00000297071 KRTAP10-10P60014 251 aa7.64□□□□□ -1.19
TRA2A-201ENST00000297071 KRTAP9-8Q9BYQ0 159 aa7.62□□□□□ -1.19
TRA2A-201ENST00000297071 INE1O15225 51 aa7.61□□□□□ -1.19
TRA2A-201ENST00000297071 PRO2289Q9P1D8 64 aa7.6□□□□□ -1.19
TRA2A-201ENST00000297071 KRTAP10-5P60370 271 aa7.56□□□□□ -1.2
TRA2A-201ENST00000297071 MT1BP07438 61 aa7.55□□□□□ -1.2
TRA2A-201ENST00000297071 MT1XP80297 61 aa7.54□□□□□ -1.2
TRA2A-201ENST00000297071 KRTAP12-3P60328 96 aa7.5□□□□□ -1.21
TRA2A-201ENST00000297071 SSPOA2VEC9 5147 aa7.5□□□□□ -1.21
TRA2A-201ENST00000297071 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
TRA2A-201ENST00000297071 SYNE2Q8WXH0 6885 aaKnown RBP7.36□□□□□ -1.23
TRA2A-201ENST00000297071 KRTAP9-3Q9BYQ3 159 aa7.31□□□□□ -1.24
TRA2A-201ENST00000297071 FCGBPQ9Y6R7 5405 aaPredicted RBP7.29□□□□□ -1.24
TRA2A-201ENST00000297071 KRTAP10-7P60409 375 aaPredicted RBP7.27□□□□□ -1.25
TRA2A-201ENST00000297071 MACF1Q9UPN3 7388 aaKnown RBP7.25□□□□□ -1.25
TRA2A-201ENST00000297071 USH2AO75445 5202 aa7.22□□□□□ -1.25
TRA2A-201ENST00000297071 NEBP20929 6669 aa7.15□□□□□ -1.27
TRA2A-201ENST00000297071 KRTAP6-3Q3LI67 103 aa7.15□□□□□ -1.27
TRA2A-201ENST00000297071 KRTAP20-1Q3LI63 56 aa7.13□□□□□ -1.27
TRA2A-201ENST00000297071 LCE3CQ5T5A8 94 aa7.11□□□□□ -1.27
TRA2A-201ENST00000297071 KRTAP19-5Q3LI72 72 aa7.04□□□□□ -1.28
TRA2A-201ENST00000297071 KRTAP19-4Q3LI73 84 aa7.01□□□□□ -1.29
TRA2A-201ENST00000297071 LCE2BO14633 110 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms