RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 SPTSSBQ8NFR3 76 aa9.34□□□□□ -0.91
CAPN1-201ENST00000279247 LCA10Q71F78 164 aa9.33□□□□□ -0.92
CAPN1-201ENST00000279247 COX6B2Q6YFQ2 88 aa9.31□□□□□ -0.92
CAPN1-201ENST00000279247 TPRXLQ17RH7 258 aa9.22□□□□□ -0.93
CAPN1-201ENST00000279247 SEC61GP60059 68 aa9.21□□□□□ -0.94
CAPN1-201ENST00000279247 CDC42SE1Q9NRR8 79 aa9.2□□□□□ -0.94
CAPN1-201ENST00000279247 MUC2Q02817 5179 aa9.17□□□□□ -0.94
CAPN1-201ENST00000279247 PMAIP1Q13794 54 aa9.15□□□□□ -0.95
CAPN1-201ENST00000279247 UQCR11O14957 56 aa9.11□□□□□ -0.95
CAPN1-201ENST00000279247 MIR22HGQ0VDD5 57 aa9.09□□□□□ -0.95
CAPN1-201ENST00000279247 S4R3F8 94 aa9.07□□□□□ -0.96
CAPN1-201ENST00000279247 HMCN2Q8NDA2 5059 aa9.05□□□□□ -0.96
CAPN1-201ENST00000279247 KRTAP3-3Q9BYR6 98 aa9.03□□□□□ -0.96
CAPN1-201ENST00000279247 RBM12B-AS1Q9P1G2 102 aa8.99□□□□□ -0.97
CAPN1-201ENST00000279247 SPATA8Q6RVD6 105 aa8.98□□□□□ -0.97
CAPN1-201ENST00000279247 A0A1B0GU33 70 aa8.98□□□□□ -0.97
CAPN1-201ENST00000279247 H1FX-AS1Q4G0G2 97 aa8.98□□□□□ -0.97
CAPN1-201ENST00000279247 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
CAPN1-201ENST00000279247 H0YAA0 97 aa8.93□□□□□ -0.98
CAPN1-201ENST00000279247 UBR4Q5T4S7 5183 aa8.91□□□□□ -0.98
CAPN1-201ENST00000279247 KRTAP4-1Q9BYQ7 146 aa8.91□□□□□ -0.98
CAPN1-201ENST00000279247 RNF213Q63HN8 5207 aa8.9□□□□□ -0.98
CAPN1-201ENST00000279247 A6NN06 94 aa8.89□□□□□ -0.99
CAPN1-201ENST00000279247 MUC17Q685J3 4493 aa8.86□□□□□ -0.99
CAPN1-201ENST00000279247 P0C880 135 aa8.83□□□□□ -1
CAPN1-201ENST00000279247 KRTAP10-6P60371 365 aaPredicted RBP8.83□□□□□ -1
CAPN1-201ENST00000279247 ADM2Q7Z4H4 148 aa8.8□□□□□ -1
CAPN1-201ENST00000279247 A0A0D9SG42 100 aa8.8□□□□□ -1
CAPN1-201ENST00000279247 CSAG1Q6PB30 78 aa8.8□□□□□ -1
CAPN1-201ENST00000279247 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CAPN1-201ENST00000279247 KRTAP13-4Q3LI77 160 aa8.75□□□□□ -1.01
CAPN1-201ENST00000279247 FAT4Q6V0I7 4981 aa8.73□□□□□ -1.01
CAPN1-201ENST00000279247 KTN1-AS1Q86SY8 53 aa8.73□□□□□ -1.01
CAPN1-201ENST00000279247 PRAC1Q96KF2 57 aa8.67□□□□□ -1.02
CAPN1-201ENST00000279247 K7ERS5 55 aa8.56□□□□□ -1.04
CAPN1-201ENST00000279247 LINC01554Q52M75 96 aa8.55□□□□□ -1.04
CAPN1-201ENST00000279247 KRTAP19-2Q3LHN2 52 aa8.53□□□□□ -1.04
CAPN1-201ENST00000279247 SPINT4Q6UDR6 99 aa8.51□□□□□ -1.05
CAPN1-201ENST00000279247 M0QZ58 72 aa8.48□□□□□ -1.05
CAPN1-201ENST00000279247 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.06
CAPN1-201ENST00000279247 CRIPTQ9P021 101 aa8.45□□□□□ -1.06
CAPN1-201ENST00000279247 R4GN34 69 aa8.45□□□□□ -1.06
CAPN1-201ENST00000279247 KRTAP12-2P59991 146 aa8.43□□□□□ -1.06
CAPN1-201ENST00000279247 FLGP20930 4061 aaPredicted RBP8.39□□□□□ -1.07
CAPN1-201ENST00000279247 KRTAP12-1P59990 96 aa8.35□□□□□ -1.07
CAPN1-201ENST00000279247 LCE2CQ5TA81 110 aa8.32□□□□□ -1.08
CAPN1-201ENST00000279247 M0R2T5 61 aa8.28□□□□□ -1.08
CAPN1-201ENST00000279247 ROMO1P60602 79 aa8.27□□□□□ -1.09
CAPN1-201ENST00000279247 MT1HP80294 61 aa8.16□□□□□ -1.1
CAPN1-201ENST00000279247 C10orf95Q9H7T3 257 aa8.13□□□□□ -1.11
CAPN1-201ENST00000279247 KRTAP25-1Q3LHN0 102 aa8.13□□□□□ -1.11
CAPN1-201ENST00000279247 CAMK2N1Q7Z7J9 78 aa8.01□□□□□ -1.13
CAPN1-201ENST00000279247 KRTAP10-10P60014 251 aa7.94□□□□□ -1.14
CAPN1-201ENST00000279247 H3BS24 57 aa7.9□□□□□ -1.14
CAPN1-201ENST00000279247 MT1FP04733 61 aa7.88□□□□□ -1.15
CAPN1-201ENST00000279247 MT2AP02795 61 aa7.87□□□□□ -1.15
CAPN1-201ENST00000279247 KRTAP9-8Q9BYQ0 159 aa7.86□□□□□ -1.15
CAPN1-201ENST00000279247 KRTAP19-1Q8IUB9 90 aa7.82□□□□□ -1.16
CAPN1-201ENST00000279247 SPRR2GQ9BYE4 73 aa7.76□□□□□ -1.17
CAPN1-201ENST00000279247 PLAC4Q8WY50 150 aa7.73□□□□□ -1.17
CAPN1-201ENST00000279247 LCE2AQ5TA79 106 aaPredicted RBP7.73□□□□□ -1.17
CAPN1-201ENST00000279247 USH2AO75445 5202 aa7.69□□□□□ -1.18
CAPN1-201ENST00000279247 FSIP2Q5CZC0 6907 aa7.57□□□□□ -1.2
CAPN1-201ENST00000279247 TNP1P09430 55 aa7.55□□□□□ -1.2
CAPN1-201ENST00000279247 KRTAP9-3Q9BYQ3 159 aa7.54□□□□□ -1.2
CAPN1-201ENST00000279247 MT1BP07438 61 aa7.47□□□□□ -1.21
CAPN1-201ENST00000279247 KRTAP19-8Q3LI54 63 aa7.45□□□□□ -1.22
CAPN1-201ENST00000279247 LCE2BO14633 110 aa7.43□□□□□ -1.22
CAPN1-201ENST00000279247 PP632Q6XCG6 107 aa7.35□□□□□ -1.23
CAPN1-201ENST00000279247 MT1XP80297 61 aa7.33□□□□□ -1.24
CAPN1-201ENST00000279247 KRTAP10-5P60370 271 aa7.32□□□□□ -1.24
CAPN1-201ENST00000279247 KRTAP15-1Q3LI76 137 aa7.26□□□□□ -1.25
CAPN1-201ENST00000279247 LCE3AQ5TA76 89 aa7.25□□□□□ -1.25
CAPN1-201ENST00000279247 SSPOA2VEC9 5147 aa7.19□□□□□ -1.26
CAPN1-201ENST00000279247 KRTAP10-7P60409 375 aaPredicted RBP7.17□□□□□ -1.26
CAPN1-201ENST00000279247 KMT2DO14686 5537 aa7.15□□□□□ -1.26
CAPN1-201ENST00000279247 A0A0A0MQY5 61 aa7.15□□□□□ -1.27
CAPN1-201ENST00000279247 PRO2289Q9P1D8 64 aa7.12□□□□□ -1.27
CAPN1-201ENST00000279247 KRTAP23-1A1A580 65 aa7.09□□□□□ -1.27
CAPN1-201ENST00000279247 KRTAP10-12P60413 245 aa7.09□□□□□ -1.27
CAPN1-201ENST00000279247 NDUFAF8A1L188 74 aa7.09□□□□□ -1.28
CAPN1-201ENST00000279247 KRTAP8-1Q8IUC2 63 aa6.92□□□□□ -1.3
CAPN1-201ENST00000279247 KRTAP4-8A0A0G2JLE6 195 aa6.9□□□□□ -1.31
CAPN1-201ENST00000279247 KRTAP4-8Q9BYQ9 185 aa6.9□□□□□ -1.31
CAPN1-201ENST00000279247 KRTAP12-3P60328 96 aa6.89□□□□□ -1.31
CAPN1-201ENST00000279247 FCGBPQ9Y6R7 5405 aaPredicted RBP6.85□□□□□ -1.31
CAPN1-201ENST00000279247 LCE2DQ5TA82 110 aaPredicted RBP6.84□□□□□ -1.31
CAPN1-201ENST00000279247 LUZP6Q538Z0 58 aa6.84□□□□□ -1.32
CAPN1-201ENST00000279247 KRTAP9-2Q9BYQ4 174 aa6.82□□□□□ -1.32
CAPN1-201ENST00000279247 KRTAP19-5Q3LI72 72 aa6.78□□□□□ -1.32
CAPN1-201ENST00000279247 KRTAP19-6Q3LI70 58 aa6.76□□□□□ -1.33
CAPN1-201ENST00000279247 SPRR5A0A1B0GTR4 108 aa6.65□□□□□ -1.35
CAPN1-201ENST00000279247 MACF1Q9UPN3 7388 aaKnown RBP6.63□□□□□ -1.35
CAPN1-201ENST00000279247 SYNE2Q8WXH0 6885 aaKnown RBP6.55□□□□□ -1.36
CAPN1-201ENST00000279247 CRCT1Q9UGL9 99 aa6.54□□□□□ -1.36
CAPN1-201ENST00000279247 KRTAP19-7Q3SYF9 63 aa6.52□□□□□ -1.36
CAPN1-201ENST00000279247 MUC12Q9UKN1 5478 aa6.52□□□□□ -1.37
CAPN1-201ENST00000279247 KRTAP4-7Q9BYR0 210 aa6.44□□□□□ -1.38
CAPN1-201ENST00000279247 LCE3CQ5T5A8 94 aa6.42□□□□□ -1.38
CAPN1-201ENST00000279247 MT1EP04732 61 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms