RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 IFI27P40305 119 aaPredicted RBP2.34□□□□□ -2.03
CD44-202ENST00000278385 KRTAP5-4Q6L8H1 288 aa2.34□□□□□ -2.03
CD44-202ENST00000278385 LINC00304Q8N9R0 145 aa2.34□□□□□ -2.03
CD44-202ENST00000278385 A0A096LNI7 61 aa2.33□□□□□ -2.04
CD44-202ENST00000278385 UQCR11O14957 56 aa2.33□□□□□ -2.04
CD44-202ENST00000278385 RPL39P62891 51 aaKnown RBP2.33□□□□□ -2.04
CD44-202ENST00000278385 COA5Q86WW8 74 aa2.33□□□□□ -2.04
CD44-202ENST00000278385 A0A087WVE0 104 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 TRBV7-4A0A0J9YYF1 115 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 LINC01549A6NIU2 74 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 NDUFA1O15239 70 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 SPINK6Q6UWN8 80 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 ZNF625Q96I27 306 aaPredicted RBP2.32□□□□□ -2.04
CD44-202ENST00000278385 FAT3Q8TDW7 4589 aa2.32□□□□□ -2.04
CD44-202ENST00000278385 TRBV30A0A0K0K1B3 111 aa2.31□□□□□ -2.04
CD44-202ENST00000278385 IGFL1Q6UW32 110 aa2.31□□□□□ -2.04
CD44-202ENST00000278385 BAGE3Q86Y29 109 aa2.31□□□□□ -2.04
CD44-202ENST00000278385 KRTAP4-4Q9BYR3 166 aa2.31□□□□□ -2.04
CD44-202ENST00000278385 LINC00846Q9NV44 126 aa2.31□□□□□ -2.04
CD44-202ENST00000278385 IGIPA6NJ69 53 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 MT1HL1P0DM35 61 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 LCE3AQ5TA76 89 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 UNQ6190/PRO20217Q6UXQ8 127 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 LINC00208Q96KT6 92 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 SPRR4Q96PI1 79 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 C6orf48Q9UBA6 75 aa2.3□□□□□ -2.04
CD44-202ENST00000278385 LRP1Q07954 4544 aaKnown RBP2.3□□□□□ -2.04
CD44-202ENST00000278385 HERC1Q15751 4861 aa2.29□□□□□ -2.04
CD44-202ENST00000278385 LINC01546A6NGU7 62 aa2.29□□□□□ -2.04
CD44-202ENST00000278385 KRTAP10-8P60410 259 aa2.29□□□□□ -2.04
CD44-202ENST00000278385 Q8IZM0 81 aa2.29□□□□□ -2.04
CD44-202ENST00000278385 SNURFQ9Y675 71 aa2.29□□□□□ -2.04
CD44-202ENST00000278385 FLG2Q5D862 2391 aaPredicted RBP2.29□□□□□ -2.04
CD44-202ENST00000278385 Q96NJ1 140 aa2.28□□□□□ -2.04
CD44-202ENST00000278385 TOMM7Q9P0U1 55 aa2.28□□□□□ -2.04
CD44-202ENST00000278385 CDKN2A-AS1Q9UH64 79 aa2.28□□□□□ -2.04
CD44-202ENST00000278385 PKHD1L1Q86WI1 4243 aa2.27□□□□□ -2.05
CD44-202ENST00000278385 IGKV4-1P06312 121 aa2.26□□□□□ -2.05
CD44-202ENST00000278385 COX17Q14061 63 aa2.26□□□□□ -2.05
CD44-202ENST00000278385 ATXN8Q156A1 80 aa2.26□□□□□ -2.05
CD44-202ENST00000278385 DMBT1Q9UGM3 2413 aaPredicted RBP2.26□□□□□ -2.05
CD44-202ENST00000278385 TNXBP22105 4242 aa2.25□□□□□ -2.05
CD44-202ENST00000278385 SRRM2Q9UQ35 2752 aaKnown RBP2.25□□□□□ -2.05
CD44-202ENST00000278385 H0Y9P7 68 aa2.24□□□□□ -2.05
CD44-202ENST00000278385 LINC00472Q9H8W2 130 aa2.24□□□□□ -2.05
CD44-202ENST00000278385 SPINK7P58062 85 aa2.23□□□□□ -2.05
CD44-202ENST00000278385 SPATA8Q6RVD6 105 aa2.23□□□□□ -2.05
CD44-202ENST00000278385 HMCN2Q8NDA2 5059 aa2.23□□□□□ -2.05
CD44-202ENST00000278385 Q6ZQY7 126 aa2.22□□□□□ -2.05
CD44-202ENST00000278385 ACYP2P14621 99 aa2.21□□□□□ -2.06
CD44-202ENST00000278385 LINC00158P58513 81 aa2.21□□□□□ -2.06
CD44-202ENST00000278385 NDUFB1O75438 58 aa2.2□□□□□ -2.06
CD44-202ENST00000278385 KRTAP13-1Q8IUC0 172 aa2.2□□□□□ -2.06
CD44-202ENST00000278385 PLNP26678 52 aa2.19□□□□□ -2.06
CD44-202ENST00000278385 PRLHP81277 87 aa2.18□□□□□ -2.06
CD44-202ENST00000278385 PP632Q6XCG6 107 aa2.18□□□□□ -2.06
CD44-202ENST00000278385 ZCCHC13Q8WW36 166 aaKnown RBP2.18□□□□□ -2.06
CD44-202ENST00000278385 OBSCN-AS1Q96MR7 158 aa2.18□□□□□ -2.06
CD44-202ENST00000278385 KCNQ1DNQ9H478 68 aa2.18□□□□□ -2.06
CD44-202ENST00000278385 ETDCA0A1B0GVM5 59 aa2.17□□□□□ -2.06
CD44-202ENST00000278385 SPRR1AP35321 89 aa2.17□□□□□ -2.06
CD44-202ENST00000278385 NREPQ16612 68 aa2.17□□□□□ -2.06
CD44-202ENST00000278385 LRP2P98164 4655 aa2.16□□□□□ -2.06
CD44-202ENST00000278385 NCR3O14931 201 aa2.16□□□□□ -2.06
CD44-202ENST00000278385 UBR4Q5T4S7 5183 aa2.16□□□□□ -2.06
CD44-202ENST00000278385 SSBP3-AS1Q7Z2R9 100 aa2.15□□□□□ -2.07
CD44-202ENST00000278385 OBSCNQ5VST9 7968 aa2.15□□□□□ -2.07
CD44-202ENST00000278385 LPAP08519 4548 aa2.14□□□□□ -2.07
CD44-202ENST00000278385 SPINK1P00995 79 aa2.14□□□□□ -2.07
CD44-202ENST00000278385 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
CD44-202ENST00000278385 RPS29P62273 56 aaKnown RBP2.13□□□□□ -2.07
CD44-202ENST00000278385 Q6ZRX8 168 aa2.13□□□□□ -2.07
CD44-202ENST00000278385 LINC00308Q8TCZ7 52 aa2.13□□□□□ -2.07
CD44-202ENST00000278385 KRTAP13-4Q3LI77 160 aa2.12□□□□□ -2.07
CD44-202ENST00000278385 SMIM11BQ8TCY0 68 aa2.12□□□□□ -2.07
CD44-202ENST00000278385 MUC17Q685J3 4493 aa2.12□□□□□ -2.07
CD44-202ENST00000278385 SPRR1BP22528 89 aa2.11□□□□□ -2.07
CD44-202ENST00000278385 PLAC4Q8WY50 150 aa2.11□□□□□ -2.07
CD44-202ENST00000278385 A0A1B0GU69 56 aa2.1□□□□□ -2.07
CD44-202ENST00000278385 COX7BP24311 80 aa2.1□□□□□ -2.07
CD44-202ENST00000278385 KRTAP4-3Q9BYR4 195 aa2.09□□□□□ -2.07
CD44-202ENST00000278385 RNF213Q63HN8 5207 aa2.09□□□□□ -2.08
CD44-202ENST00000278385 LINC00575Q6W349 94 aa2.08□□□□□ -2.08
CD44-202ENST00000278385 DEFB105AQ8NG35 78 aa2.08□□□□□ -2.08
CD44-202ENST00000278385 IGLV5-48A0A075B6I7 105 aa2.07□□□□□ -2.08
CD44-202ENST00000278385 UBL5Q9BZL1 73 aa2.05□□□□□ -2.08
CD44-202ENST00000278385 MUC2Q02817 5179 aa2.04□□□□□ -2.08
CD44-202ENST00000278385 RPL37P61927 97 aaKnown RBP2.03□□□□□ -2.08
CD44-202ENST00000278385 C9orf92A6NGG3 77 aa2.02□□□□□ -2.09
CD44-202ENST00000278385 H0YGX0 51 aa2.02□□□□□ -2.09
CD44-202ENST00000278385 PCOTHQ58A44 107 aa2.02□□□□□ -2.09
CD44-202ENST00000278385 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
CD44-202ENST00000278385 LCE3DQ9BYE3 92 aa2.02□□□□□ -2.09
CD44-202ENST00000278385 FAT4Q6V0I7 4981 aa2.01□□□□□ -2.09
CD44-202ENST00000278385 KRTAP5-5Q701N2 237 aaPredicted RBP2.01□□□□□ -2.09
CD44-202ENST00000278385 KRTAP4-1Q9BYQ7 146 aa2.01□□□□□ -2.09
CD44-202ENST00000278385 LCE1CQ5T751 118 aa1.98□□□□□ -2.09
CD44-202ENST00000278385 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
CD44-202ENST00000278385 KRTAP19-2Q3LHN2 52 aa1.97□□□□□ -2.09
CD44-202ENST00000278385 MT1HP80294 61 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms