RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 UQCR11O14957 56 aa7.11□□□□□ -1.27
C9orf3-201ENST00000277198 KRTAP10-8P60410 259 aa7.08□□□□□ -1.28
C9orf3-201ENST00000277198 MIR22HGQ0VDD5 57 aa7.06□□□□□ -1.28
C9orf3-201ENST00000277198 C20orf166-AS1Q96NR2 134 aa7.06□□□□□ -1.28
C9orf3-201ENST00000277198 A8MUU9 505 aa7.04□□□□□ -1.28
C9orf3-201ENST00000277198 RBM12B-AS1Q9P1G2 102 aa7.02□□□□□ -1.29
C9orf3-201ENST00000277198 UBR4Q5T4S7 5183 aa7.02□□□□□ -1.29
C9orf3-201ENST00000277198 LRP2P98164 4655 aa7.01□□□□□ -1.29
C9orf3-201ENST00000277198 LPAP08519 4548 aa6.92□□□□□ -1.3
C9orf3-201ENST00000277198 C9orf92A6NGG3 77 aa6.92□□□□□ -1.3
C9orf3-201ENST00000277198 KRTAP3-1Q9BYR8 98 aa6.88□□□□□ -1.31
C9orf3-201ENST00000277198 RNF213Q63HN8 5207 aa6.85□□□□□ -1.31
C9orf3-201ENST00000277198 COX6B2Q6YFQ2 88 aa6.83□□□□□ -1.32
C9orf3-201ENST00000277198 A0A1B0GU33 70 aa6.81□□□□□ -1.32
C9orf3-201ENST00000277198 PRAC1Q96KF2 57 aa6.8□□□□□ -1.32
C9orf3-201ENST00000277198 H0YAA0 97 aa6.79□□□□□ -1.32
C9orf3-201ENST00000277198 ADM2Q7Z4H4 148 aa6.79□□□□□ -1.32
C9orf3-201ENST00000277198 H1FX-AS1Q4G0G2 97 aa6.78□□□□□ -1.32
C9orf3-201ENST00000277198 LINC01554Q52M75 96 aa6.71□□□□□ -1.33
C9orf3-201ENST00000277198 RPL37P61927 97 aaKnown RBP6.69□□□□□ -1.34
C9orf3-201ENST00000277198 MUC2Q02817 5179 aa6.68□□□□□ -1.34
C9orf3-201ENST00000277198 CSAG1Q6PB30 78 aa6.66□□□□□ -1.34
C9orf3-201ENST00000277198 K7ERS5 55 aa6.66□□□□□ -1.34
C9orf3-201ENST00000277198 XP32Q5T750 250 aa6.61□□□□□ -1.35
C9orf3-201ENST00000277198 KRTAP3-3Q9BYR6 98 aa6.6□□□□□ -1.35
C9orf3-201ENST00000277198 TPRXLQ17RH7 258 aa6.59□□□□□ -1.35
C9orf3-201ENST00000277198 KRTAP10-6P60371 365 aaPredicted RBP6.57□□□□□ -1.36
C9orf3-201ENST00000277198 S4R3F8 94 aa6.56□□□□□ -1.36
C9orf3-201ENST00000277198 KRTAP25-1Q3LHN0 102 aa6.55□□□□□ -1.36
C9orf3-201ENST00000277198 MUC17Q685J3 4493 aa6.53□□□□□ -1.36
C9orf3-201ENST00000277198 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
C9orf3-201ENST00000277198 ROMO1P60602 79 aa6.46□□□□□ -1.37
C9orf3-201ENST00000277198 FAT4Q6V0I7 4981 aa6.46□□□□□ -1.38
C9orf3-201ENST00000277198 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
C9orf3-201ENST00000277198 KRTAP13-4Q3LI77 160 aa6.44□□□□□ -1.38
C9orf3-201ENST00000277198 P0C880 135 aa6.38□□□□□ -1.39
C9orf3-201ENST00000277198 A0A0D9SG42 100 aa6.37□□□□□ -1.39
C9orf3-201ENST00000277198 SEC61BP60468 96 aaKnown RBP6.35□□□□□ -1.39
C9orf3-201ENST00000277198 LCE2AQ5TA79 106 aaPredicted RBP6.34□□□□□ -1.39
C9orf3-201ENST00000277198 M0QZ58 72 aa6.33□□□□□ -1.4
C9orf3-201ENST00000277198 CRIPTQ9P021 101 aa6.27□□□□□ -1.4
C9orf3-201ENST00000277198 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
C9orf3-201ENST00000277198 KRTAP12-1P59990 96 aa6.25□□□□□ -1.41
C9orf3-201ENST00000277198 KRTAP19-2Q3LHN2 52 aa6.25□□□□□ -1.41
C9orf3-201ENST00000277198 LCE2CQ5TA81 110 aa6.24□□□□□ -1.41
C9orf3-201ENST00000277198 SPINT4Q6UDR6 99 aa6.19□□□□□ -1.42
C9orf3-201ENST00000277198 H3BS24 57 aa6.14□□□□□ -1.43
C9orf3-201ENST00000277198 KRTAP9-2Q9BYQ4 174 aa6.14□□□□□ -1.43
C9orf3-201ENST00000277198 MT1HP80294 61 aa6.13□□□□□ -1.43
C9orf3-201ENST00000277198 C10orf95Q9H7T3 257 aa6.1□□□□□ -1.43
C9orf3-201ENST00000277198 FLGP20930 4061 aaPredicted RBP6.1□□□□□ -1.43
C9orf3-201ENST00000277198 R4GN34 69 aa6.09□□□□□ -1.43
C9orf3-201ENST00000277198 LORP23490 312 aaPredicted RBP5.99□□□□□ -1.45
C9orf3-201ENST00000277198 M0R2T5 61 aa5.98□□□□□ -1.45
C9orf3-201ENST00000277198 KRTAP15-1Q3LI76 137 aa5.97□□□□□ -1.45
C9orf3-201ENST00000277198 LCE2DQ5TA82 110 aaPredicted RBP5.93□□□□□ -1.46
C9orf3-201ENST00000277198 FSIP2Q5CZC0 6907 aa5.91□□□□□ -1.46
C9orf3-201ENST00000277198 KRTAP9-6A0A140TA67 174 aa5.89□□□□□ -1.47
C9orf3-201ENST00000277198 KRTAP9-8Q9BYQ0 159 aa5.82□□□□□ -1.48
C9orf3-201ENST00000277198 PP632Q6XCG6 107 aa5.81□□□□□ -1.48
C9orf3-201ENST00000277198 CRCT1Q9UGL9 99 aa5.78□□□□□ -1.48
C9orf3-201ENST00000277198 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
C9orf3-201ENST00000277198 NDUFAF8A1L188 74 aa5.75□□□□□ -1.49
C9orf3-201ENST00000277198 MT2AP02795 61 aa5.74□□□□□ -1.49
C9orf3-201ENST00000277198 MT1FP04733 61 aa5.72□□□□□ -1.49
C9orf3-201ENST00000277198 PLAC4Q8WY50 150 aa5.71□□□□□ -1.49
C9orf3-201ENST00000277198 USH2AO75445 5202 aa5.67□□□□□ -1.5
C9orf3-201ENST00000277198 KRTAP23-1A1A580 65 aa5.66□□□□□ -1.5
C9orf3-201ENST00000277198 KRTAP10-10P60014 251 aa5.64□□□□□ -1.51
C9orf3-201ENST00000277198 KRTAP9-3Q9BYQ3 159 aa5.63□□□□□ -1.51
C9orf3-201ENST00000277198 LCE2BO14633 110 aa5.62□□□□□ -1.51
C9orf3-201ENST00000277198 SSPOA2VEC9 5147 aa5.61□□□□□ -1.51
C9orf3-201ENST00000277198 TNP1P09430 55 aa5.61□□□□□ -1.51
C9orf3-201ENST00000277198 SPRR2GQ9BYE4 73 aa5.55□□□□□ -1.52
C9orf3-201ENST00000277198 LUZP6Q538Z0 58 aa5.49□□□□□ -1.53
C9orf3-201ENST00000277198 FCGBPQ9Y6R7 5405 aaPredicted RBP5.48□□□□□ -1.53
C9orf3-201ENST00000277198 KRTAP19-1Q8IUB9 90 aa5.48□□□□□ -1.53
C9orf3-201ENST00000277198 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.4□□□□□ -1.54
C9orf3-201ENST00000277198 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
C9orf3-201ENST00000277198 KRTAP19-6Q3LI70 58 aa5.35□□□□□ -1.55
C9orf3-201ENST00000277198 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
C9orf3-201ENST00000277198 KRTAP19-8Q3LI54 63 aa5.3□□□□□ -1.56
C9orf3-201ENST00000277198 MACF1Q9UPN3 7388 aaKnown RBP5.27□□□□□ -1.57
C9orf3-201ENST00000277198 MT1BP07438 61 aa5.25□□□□□ -1.57
C9orf3-201ENST00000277198 A0A0A0MQY5 61 aa5.22□□□□□ -1.57
C9orf3-201ENST00000277198 LCE3AQ5TA76 89 aa5.22□□□□□ -1.57
C9orf3-201ENST00000277198 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.58
C9orf3-201ENST00000277198 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
C9orf3-201ENST00000277198 KRTAP10-5P60370 271 aa5.15□□□□□ -1.59
C9orf3-201ENST00000277198 MT1XP80297 61 aa5.13□□□□□ -1.59
C9orf3-201ENST00000277198 KRTAP10-12P60413 245 aa5.06□□□□□ -1.6
C9orf3-201ENST00000277198 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
C9orf3-201ENST00000277198 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
C9orf3-201ENST00000277198 KRTAP6-3Q3LI67 103 aa5.02□□□□□ -1.61
C9orf3-201ENST00000277198 KRTAP10-7P60409 375 aaPredicted RBP4.95□□□□□ -1.62
C9orf3-201ENST00000277198 MUC12Q9UKN1 5478 aa4.93□□□□□ -1.62
C9orf3-201ENST00000277198 KMT2DO14686 5537 aa4.91□□□□□ -1.62
C9orf3-201ENST00000277198 NEBP20929 6669 aa4.86□□□□□ -1.63
C9orf3-201ENST00000277198 MDN1Q9NU22 5596 aa4.83□□□□□ -1.64
C9orf3-201ENST00000277198 KRTAP5-9P26371 169 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms