RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 COX6B2Q6YFQ2 88 aa7.24□□□□□ -1.25
SS18-201ENST00000269137 KRTAP3-1Q9BYR8 98 aa7.23□□□□□ -1.25
SS18-201ENST00000269137 LINC01558Q9Y6Z2 57 aa7.23□□□□□ -1.25
SS18-201ENST00000269137 PRR15LQ9BU68 103 aa7.22□□□□□ -1.25
SS18-201ENST00000269137 CHKB-CPT1BH3BT56 60 aa7.17□□□□□ -1.26
SS18-201ENST00000269137 KRTAP4-1Q9BYQ7 146 aa7.17□□□□□ -1.26
SS18-201ENST00000269137 RBM12B-AS1Q9P1G2 102 aa7.14□□□□□ -1.27
SS18-201ENST00000269137 H1FX-AS1Q4G0G2 97 aa7.08□□□□□ -1.28
SS18-201ENST00000269137 A6NED7 52 aa7.06□□□□□ -1.28
SS18-201ENST00000269137 MUC2Q02817 5179 aa7.05□□□□□ -1.28
SS18-201ENST00000269137 UBR4Q5T4S7 5183 aa7.03□□□□□ -1.28
SS18-201ENST00000269137 A8MU10 97 aa7.03□□□□□ -1.28
SS18-201ENST00000269137 RNF213Q63HN8 5207 aa7.02□□□□□ -1.29
SS18-201ENST00000269137 LCA10Q71F78 164 aa7.01□□□□□ -1.29
SS18-201ENST00000269137 SPTSSBQ8NFR3 76 aa7.01□□□□□ -1.29
SS18-201ENST00000269137 KRTAP19-2Q3LHN2 52 aa7.01□□□□□ -1.29
SS18-201ENST00000269137 CDC42SE1Q9NRR8 79 aa7□□□□□ -1.29
SS18-201ENST00000269137 S4R3F8 94 aa7□□□□□ -1.29
SS18-201ENST00000269137 A0A1B0GU69 56 aa6.99□□□□□ -1.29
SS18-201ENST00000269137 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.3
SS18-201ENST00000269137 CSAG1Q6PB30 78 aa6.87□□□□□ -1.31
SS18-201ENST00000269137 PMAIP1Q13794 54 aa6.86□□□□□ -1.31
SS18-201ENST00000269137 UQCR11O14957 56 aa6.85□□□□□ -1.31
SS18-201ENST00000269137 SEC61GP60059 68 aa6.85□□□□□ -1.31
SS18-201ENST00000269137 LCE2CQ5TA81 110 aa6.85□□□□□ -1.31
SS18-201ENST00000269137 SPATA8Q6RVD6 105 aa6.84□□□□□ -1.31
SS18-201ENST00000269137 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
SS18-201ENST00000269137 A6NN06 94 aa6.78□□□□□ -1.32
SS18-201ENST00000269137 FAT4Q6V0I7 4981 aa6.77□□□□□ -1.33
SS18-201ENST00000269137 H0YAA0 97 aa6.73□□□□□ -1.33
SS18-201ENST00000269137 KRTAP10-6P60371 365 aaPredicted RBP6.71□□□□□ -1.34
SS18-201ENST00000269137 MT1HP80294 61 aa6.69□□□□□ -1.34
SS18-201ENST00000269137 A0A1B0GU33 70 aa6.69□□□□□ -1.34
SS18-201ENST00000269137 ADM2Q7Z4H4 148 aa6.69□□□□□ -1.34
SS18-201ENST00000269137 KTN1-AS1Q86SY8 53 aa6.67□□□□□ -1.34
SS18-201ENST00000269137 P0C880 135 aa6.65□□□□□ -1.34
SS18-201ENST00000269137 M0R2T5 61 aa6.61□□□□□ -1.35
SS18-201ENST00000269137 M0QZ58 72 aa6.51□□□□□ -1.37
SS18-201ENST00000269137 KRTAP13-4Q3LI77 160 aa6.5□□□□□ -1.37
SS18-201ENST00000269137 LORP23490 312 aaPredicted RBP6.47□□□□□ -1.37
SS18-201ENST00000269137 LCE2AQ5TA79 106 aaPredicted RBP6.46□□□□□ -1.37
SS18-201ENST00000269137 KRTAP9-8Q9BYQ0 159 aa6.46□□□□□ -1.37
SS18-201ENST00000269137 CRIPTQ9P021 101 aa6.46□□□□□ -1.38
SS18-201ENST00000269137 R4GN34 69 aa6.45□□□□□ -1.38
SS18-201ENST00000269137 MT2AP02795 61 aa6.43□□□□□ -1.38
SS18-201ENST00000269137 PRAC1Q96KF2 57 aa6.41□□□□□ -1.38
SS18-201ENST00000269137 K7ERS5 55 aa6.41□□□□□ -1.38
SS18-201ENST00000269137 MT1FP04733 61 aa6.39□□□□□ -1.39
SS18-201ENST00000269137 KRTAP10-10P60014 251 aa6.37□□□□□ -1.39
SS18-201ENST00000269137 A0A0D9SG42 100 aa6.36□□□□□ -1.39
SS18-201ENST00000269137 SPRR2GQ9BYE4 73 aa6.32□□□□□ -1.4
SS18-201ENST00000269137 LINC01554Q52M75 96 aa6.31□□□□□ -1.4
SS18-201ENST00000269137 KRTAP19-1Q8IUB9 90 aa6.28□□□□□ -1.4
SS18-201ENST00000269137 KRTAP12-1P59990 96 aa6.27□□□□□ -1.41
SS18-201ENST00000269137 KRTAP12-2P59991 146 aa6.24□□□□□ -1.41
SS18-201ENST00000269137 LCE2BO14633 110 aa6.23□□□□□ -1.41
SS18-201ENST00000269137 KRTAP9-3Q9BYQ3 159 aa6.23□□□□□ -1.41
SS18-201ENST00000269137 ROMO1P60602 79 aa6.22□□□□□ -1.41
SS18-201ENST00000269137 SPINT4Q6UDR6 99 aa6.22□□□□□ -1.41
SS18-201ENST00000269137 KRTAP25-1Q3LHN0 102 aa6.17□□□□□ -1.42
SS18-201ENST00000269137 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.42
SS18-201ENST00000269137 PLAC4Q8WY50 150 aa6.08□□□□□ -1.44
SS18-201ENST00000269137 MT1BP07438 61 aa6.05□□□□□ -1.44
SS18-201ENST00000269137 CAMK2N1Q7Z7J9 78 aa6.04□□□□□ -1.44
SS18-201ENST00000269137 USH2AO75445 5202 aa5.95□□□□□ -1.46
SS18-201ENST00000269137 C10orf95Q9H7T3 257 aa5.94□□□□□ -1.46
SS18-201ENST00000269137 MT1XP80297 61 aa5.85□□□□□ -1.47
SS18-201ENST00000269137 KRTAP10-5P60370 271 aa5.84□□□□□ -1.47
SS18-201ENST00000269137 PRO2289Q9P1D8 64 aa5.8□□□□□ -1.48
SS18-201ENST00000269137 TNP1P09430 55 aa5.76□□□□□ -1.49
SS18-201ENST00000269137 SSPOA2VEC9 5147 aa5.75□□□□□ -1.49
SS18-201ENST00000269137 LOC100996750A0A140TA64 210 aa5.71□□□□□ -1.49
SS18-201ENST00000269137 KRTAP4-6Q9BYQ5 205 aa5.71□□□□□ -1.49
SS18-201ENST00000269137 KRTAP19-6Q3LI70 58 aa5.7□□□□□ -1.5
SS18-201ENST00000269137 FSIP2Q5CZC0 6907 aa5.68□□□□□ -1.5
SS18-201ENST00000269137 KRTAP9-2Q9BYQ4 174 aa5.64□□□□□ -1.51
SS18-201ENST00000269137 PP632Q6XCG6 107 aa5.62□□□□□ -1.51
SS18-201ENST00000269137 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
SS18-201ENST00000269137 KRTAP10-7P60409 375 aaPredicted RBP5.6□□□□□ -1.51
SS18-201ENST00000269137 KRTAP15-1Q3LI76 137 aa5.57□□□□□ -1.52
SS18-201ENST00000269137 KRTAP10-12P60413 245 aa5.56□□□□□ -1.52
SS18-201ENST00000269137 FCGBPQ9Y6R7 5405 aaPredicted RBP5.53□□□□□ -1.52
SS18-201ENST00000269137 LCE3AQ5TA76 89 aa5.5□□□□□ -1.53
SS18-201ENST00000269137 CRCT1Q9UGL9 99 aa5.44□□□□□ -1.54
SS18-201ENST00000269137 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
SS18-201ENST00000269137 KMT2DO14686 5537 aa5.41□□□□□ -1.54
SS18-201ENST00000269137 KRTAP4-8A0A0G2JLE6 195 aa5.38□□□□□ -1.55
SS18-201ENST00000269137 KRTAP4-8Q9BYQ9 185 aa5.38□□□□□ -1.55
SS18-201ENST00000269137 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
SS18-201ENST00000269137 NDUFAF8A1L188 74 aa5.27□□□□□ -1.57
SS18-201ENST00000269137 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
SS18-201ENST00000269137 MACF1Q9UPN3 7388 aaKnown RBP5.24□□□□□ -1.57
SS18-201ENST00000269137 KRTAP19-7Q3SYF9 63 aa5.23□□□□□ -1.57
SS18-201ENST00000269137 H3BS24 57 aa5.2□□□□□ -1.58
SS18-201ENST00000269137 KRTAP9-6A0A140TA67 174 aa5.2□□□□□ -1.58
SS18-201ENST00000269137 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.59
SS18-201ENST00000269137 MT1EP04732 61 aa5.13□□□□□ -1.59
SS18-201ENST00000269137 LUZP6Q538Z0 58 aa5.11□□□□□ -1.59
SS18-201ENST00000269137 SYNE2Q8WXH0 6885 aaKnown RBP5.09□□□□□ -1.59
SS18-201ENST00000269137 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 287.5 ms