RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 LCA10Q71F78 164 aa8.27□□□□□ -1.09
USP4-201ENST00000265560 Q5VV11 94 aa8.25□□□□□ -1.09
USP4-201ENST00000265560 LINC01558Q9Y6Z2 57 aa8.25□□□□□ -1.09
USP4-201ENST00000265560 RBM12B-AS1Q9P1G2 102 aa8.25□□□□□ -1.09
USP4-201ENST00000265560 V9GYY9 64 aa8.25□□□□□ -1.09
USP4-201ENST00000265560 KRTAP3-3Q9BYR6 98 aa8.22□□□□□ -1.09
USP4-201ENST00000265560 FAT4Q6V0I7 4981 aa8.21□□□□□ -1.1
USP4-201ENST00000265560 S4R3F8 94 aa8.2□□□□□ -1.1
USP4-201ENST00000265560 H1FX-AS1Q4G0G2 97 aa8.2□□□□□ -1.1
USP4-201ENST00000265560 A0A1B0GU69 56 aa8.19□□□□□ -1.1
USP4-201ENST00000265560 A8MU10 97 aa8.17□□□□□ -1.1
USP4-201ENST00000265560 BRK1Q8WUW1 75 aa8.16□□□□□ -1.1
USP4-201ENST00000265560 SPTSSBQ8NFR3 76 aa8.14□□□□□ -1.11
USP4-201ENST00000265560 A6NED7 52 aa8.12□□□□□ -1.11
USP4-201ENST00000265560 SEC61GP60059 68 aa8.06□□□□□ -1.12
USP4-201ENST00000265560 KRTAP19-2Q3LHN2 52 aa8.06□□□□□ -1.12
USP4-201ENST00000265560 CSAG1Q6PB30 78 aa7.99□□□□□ -1.13
USP4-201ENST00000265560 FLGP20930 4061 aaPredicted RBP7.98□□□□□ -1.13
USP4-201ENST00000265560 P0C880 135 aa7.96□□□□□ -1.14
USP4-201ENST00000265560 SVIPQ8NHG7 77 aa7.95□□□□□ -1.14
USP4-201ENST00000265560 ADM2Q7Z4H4 148 aa7.94□□□□□ -1.14
USP4-201ENST00000265560 KRTAP10-6P60371 365 aaPredicted RBP7.94□□□□□ -1.14
USP4-201ENST00000265560 SPATA8Q6RVD6 105 aa7.94□□□□□ -1.14
USP4-201ENST00000265560 KRTAP3-2Q9BYR7 98 aa7.94□□□□□ -1.14
USP4-201ENST00000265560 A0A1B0GU33 70 aa7.92□□□□□ -1.14
USP4-201ENST00000265560 UQCR11O14957 56 aa7.91□□□□□ -1.14
USP4-201ENST00000265560 MIR22HGQ0VDD5 57 aa7.87□□□□□ -1.15
USP4-201ENST00000265560 LCE2CQ5TA81 110 aa7.87□□□□□ -1.15
USP4-201ENST00000265560 CDC42SE1Q9NRR8 79 aa7.86□□□□□ -1.15
USP4-201ENST00000265560 H0YAA0 97 aa7.85□□□□□ -1.15
USP4-201ENST00000265560 PRO0628Q9UI54 55 aa7.85□□□□□ -1.15
USP4-201ENST00000265560 KRTAP13-4Q3LI77 160 aa7.83□□□□□ -1.16
USP4-201ENST00000265560 A0A0D9SG42 100 aa7.78□□□□□ -1.16
USP4-201ENST00000265560 LORP23490 312 aaPredicted RBP7.76□□□□□ -1.17
USP4-201ENST00000265560 M0R2T5 61 aa7.76□□□□□ -1.17
USP4-201ENST00000265560 MT1HP80294 61 aa7.71□□□□□ -1.18
USP4-201ENST00000265560 LINC01554Q52M75 96 aa7.67□□□□□ -1.18
USP4-201ENST00000265560 PMAIP1Q13794 54 aa7.67□□□□□ -1.18
USP4-201ENST00000265560 M0QZ58 72 aa7.64□□□□□ -1.19
USP4-201ENST00000265560 R4GN34 69 aa7.62□□□□□ -1.19
USP4-201ENST00000265560 SPINT4Q6UDR6 99 aa7.53□□□□□ -1.2
USP4-201ENST00000265560 A6NN06 94 aa7.52□□□□□ -1.21
USP4-201ENST00000265560 KRTAP12-2P59991 146 aa7.51□□□□□ -1.21
USP4-201ENST00000265560 KRTAP12-1P59990 96 aa7.44□□□□□ -1.22
USP4-201ENST00000265560 KRTAP10-10P60014 251 aa7.44□□□□□ -1.22
USP4-201ENST00000265560 MT1FP04733 61 aa7.43□□□□□ -1.22
USP4-201ENST00000265560 KRTAP9-8Q9BYQ0 159 aa7.43□□□□□ -1.22
USP4-201ENST00000265560 MT2AP02795 61 aa7.43□□□□□ -1.22
USP4-201ENST00000265560 K7ERS5 55 aa7.41□□□□□ -1.22
USP4-201ENST00000265560 PRAC1Q96KF2 57 aa7.31□□□□□ -1.24
USP4-201ENST00000265560 KRTAP19-1Q8IUB9 90 aa7.3□□□□□ -1.24
USP4-201ENST00000265560 CRIPTQ9P021 101 aa7.29□□□□□ -1.24
USP4-201ENST00000265560 LCE2AQ5TA79 106 aaPredicted RBP7.27□□□□□ -1.25
USP4-201ENST00000265560 KTN1-AS1Q86SY8 53 aa7.26□□□□□ -1.25
USP4-201ENST00000265560 SPRR2GQ9BYE4 73 aa7.22□□□□□ -1.25
USP4-201ENST00000265560 USH2AO75445 5202 aa7.21□□□□□ -1.26
USP4-201ENST00000265560 CAMK2N1Q7Z7J9 78 aa7.18□□□□□ -1.26
USP4-201ENST00000265560 ROMO1P60602 79 aa7.17□□□□□ -1.26
USP4-201ENST00000265560 KRTAP9-3Q9BYQ3 159 aa7.14□□□□□ -1.27
USP4-201ENST00000265560 FSIP2Q5CZC0 6907 aa7.09□□□□□ -1.27
USP4-201ENST00000265560 C10orf95Q9H7T3 257 aa7.08□□□□□ -1.28
USP4-201ENST00000265560 PLAC4Q8WY50 150 aa7.07□□□□□ -1.28
USP4-201ENST00000265560 LCE2BO14633 110 aa7.01□□□□□ -1.29
USP4-201ENST00000265560 MT1BP07438 61 aa7.01□□□□□ -1.29
USP4-201ENST00000265560 KRTAP19-8Q3LI54 63 aa6.98□□□□□ -1.29
USP4-201ENST00000265560 KRTAP25-1Q3LHN0 102 aa6.91□□□□□ -1.3
USP4-201ENST00000265560 MT1XP80297 61 aa6.81□□□□□ -1.32
USP4-201ENST00000265560 KRTAP10-5P60370 271 aa6.81□□□□□ -1.32
USP4-201ENST00000265560 SSPOA2VEC9 5147 aa6.75□□□□□ -1.33
USP4-201ENST00000265560 TNP1P09430 55 aa6.74□□□□□ -1.33
USP4-201ENST00000265560 KMT2DO14686 5537 aa6.73□□□□□ -1.33
USP4-201ENST00000265560 KRTAP10-7P60409 375 aaPredicted RBP6.63□□□□□ -1.35
USP4-201ENST00000265560 PRO2289Q9P1D8 64 aa6.59□□□□□ -1.35
USP4-201ENST00000265560 LCE3AQ5TA76 89 aa6.56□□□□□ -1.36
USP4-201ENST00000265560 KRTAP10-12P60413 245 aa6.47□□□□□ -1.37
USP4-201ENST00000265560 PP632Q6XCG6 107 aa6.45□□□□□ -1.38
USP4-201ENST00000265560 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
USP4-201ENST00000265560 KRTAP4-8Q9BYQ9 185 aa6.45□□□□□ -1.38
USP4-201ENST00000265560 LCE2DQ5TA82 110 aaPredicted RBP6.43□□□□□ -1.38
USP4-201ENST00000265560 FCGBPQ9Y6R7 5405 aaPredicted RBP6.42□□□□□ -1.38
USP4-201ENST00000265560 KRTAP19-6Q3LI70 58 aa6.38□□□□□ -1.39
USP4-201ENST00000265560 KRTAP9-2Q9BYQ4 174 aa6.34□□□□□ -1.39
USP4-201ENST00000265560 KRTAP23-1A1A580 65 aa6.32□□□□□ -1.4
USP4-201ENST00000265560 KRTAP8-1Q8IUC2 63 aa6.27□□□□□ -1.41
USP4-201ENST00000265560 KRTAP12-3P60328 96 aa6.23□□□□□ -1.41
USP4-201ENST00000265560 KRTAP19-5Q3LI72 72 aa6.23□□□□□ -1.41
USP4-201ENST00000265560 MACF1Q9UPN3 7388 aaKnown RBP6.23□□□□□ -1.41
USP4-201ENST00000265560 SYNE2Q8WXH0 6885 aaKnown RBP6.16□□□□□ -1.42
USP4-201ENST00000265560 KRTAP15-1Q3LI76 137 aa6.14□□□□□ -1.43
USP4-201ENST00000265560 MUC12Q9UKN1 5478 aa6.12□□□□□ -1.43
USP4-201ENST00000265560 CRCT1Q9UGL9 99 aa6.1□□□□□ -1.43
USP4-201ENST00000265560 KRTAP19-7Q3SYF9 63 aa6.08□□□□□ -1.44
USP4-201ENST00000265560 MT1EP04732 61 aa5.93□□□□□ -1.46
USP4-201ENST00000265560 KRTAP4-7Q9BYR0 210 aa5.91□□□□□ -1.46
USP4-201ENST00000265560 SPRR2FQ96RM1 72 aa5.87□□□□□ -1.47
USP4-201ENST00000265560 DSTQ03001 7570 aaKnown RBP5.86□□□□□ -1.47
USP4-201ENST00000265560 NDUFAF8A1L188 74 aa5.84□□□□□ -1.47
USP4-201ENST00000265560 MT1LQ93083 61 aa5.83□□□□□ -1.48
USP4-201ENST00000265560 MDN1Q9NU22 5596 aa5.83□□□□□ -1.48
USP4-201ENST00000265560 LCE3CQ5T5A8 94 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms