RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 HRES1P13985 223 aa11.96□□□□□ -0.5
SIX3-201ENST00000260653 RPL37P61927 97 aaKnown RBP11.91□□□□□ -0.5
SIX3-201ENST00000260653 TPRXLQ17RH7 258 aa11.87□□□□□ -0.51
SIX3-201ENST00000260653 LPAP08519 4548 aa11.83□□□□□ -0.52
SIX3-201ENST00000260653 SPINK7P58062 85 aa11.82□□□□□ -0.52
SIX3-201ENST00000260653 LRP2P98164 4655 aa11.79□□□□□ -0.52
SIX3-201ENST00000260653 COA5Q86WW8 74 aa11.79□□□□□ -0.52
SIX3-201ENST00000260653 PCLOQ9Y6V0 5065 aa11.78□□□□□ -0.52
SIX3-201ENST00000260653 DMAC1Q96GE9 116 aa11.78□□□□□ -0.52
SIX3-201ENST00000260653 LINC01558Q9Y6Z2 57 aa11.7□□□□□ -0.54
SIX3-201ENST00000260653 ACYP2P14621 99 aa11.7□□□□□ -0.54
SIX3-201ENST00000260653 CSAG1Q6PB30 78 aa11.65□□□□□ -0.54
SIX3-201ENST00000260653 ROMO1P60602 79 aa11.59□□□□□ -0.55
SIX3-201ENST00000260653 HERC1Q15751 4861 aa11.58□□□□□ -0.56
SIX3-201ENST00000260653 KRTAP3-1Q9BYR8 98 aa11.57□□□□□ -0.56
SIX3-201ENST00000260653 COX6B2Q6YFQ2 88 aa11.51□□□□□ -0.57
SIX3-201ENST00000260653 SEC61BP60468 96 aaKnown RBP11.43□□□□□ -0.58
SIX3-201ENST00000260653 HMCN2Q8NDA2 5059 aa11.4□□□□□ -0.58
SIX3-201ENST00000260653 MIR22HGQ0VDD5 57 aa11.37□□□□□ -0.59
SIX3-201ENST00000260653 P0C880 135 aa11.32□□□□□ -0.6
SIX3-201ENST00000260653 KRTAP4-1Q9BYQ7 146 aa11.3□□□□□ -0.6
SIX3-201ENST00000260653 MUC17Q685J3 4493 aa11.28□□□□□ -0.6
SIX3-201ENST00000260653 SPATA8Q6RVD6 105 aa11.22□□□□□ -0.61
SIX3-201ENST00000260653 H1FX-AS1Q4G0G2 97 aa11.18□□□□□ -0.62
SIX3-201ENST00000260653 S4R3F8 94 aa11.16□□□□□ -0.62
SIX3-201ENST00000260653 KRTAP3-3Q9BYR6 98 aa11.14□□□□□ -0.63
SIX3-201ENST00000260653 MUC2Q02817 5179 aa11.14□□□□□ -0.63
SIX3-201ENST00000260653 KRTAP25-1Q3LHN0 102 aa11.13□□□□□ -0.63
SIX3-201ENST00000260653 A0A1B0GU69 56 aa11.12□□□□□ -0.63
SIX3-201ENST00000260653 KRTAP19-2Q3LHN2 52 aa10.99□□□□□ -0.65
SIX3-201ENST00000260653 UBR4Q5T4S7 5183 aa10.95□□□□□ -0.66
SIX3-201ENST00000260653 UQCR11O14957 56 aa10.94□□□□□ -0.66
SIX3-201ENST00000260653 NDUFAF8A1L188 74 aa10.93□□□□□ -0.66
SIX3-201ENST00000260653 RNF213Q63HN8 5207 aa10.83□□□□□ -0.68
SIX3-201ENST00000260653 LUZP6Q538Z0 58 aa10.82□□□□□ -0.68
SIX3-201ENST00000260653 FLGP20930 4061 aaPredicted RBP10.79□□□□□ -0.68
SIX3-201ENST00000260653 KRTAP3-2Q9BYR7 98 aa10.78□□□□□ -0.68
SIX3-201ENST00000260653 KRTAP10-6P60371 365 aaPredicted RBP10.78□□□□□ -0.68
SIX3-201ENST00000260653 A0A1B0GU33 70 aa10.75□□□□□ -0.69
SIX3-201ENST00000260653 LCE2CQ5TA81 110 aa10.67□□□□□ -0.7
SIX3-201ENST00000260653 FAT4Q6V0I7 4981 aa10.66□□□□□ -0.7
SIX3-201ENST00000260653 H0YAA0 97 aa10.64□□□□□ -0.71
SIX3-201ENST00000260653 SPINT4Q6UDR6 99 aa10.62□□□□□ -0.71
SIX3-201ENST00000260653 K7ERS5 55 aa10.6□□□□□ -0.71
SIX3-201ENST00000260653 KRTAP15-1Q3LI76 137 aa10.54□□□□□ -0.72
SIX3-201ENST00000260653 KRTAP13-4Q3LI77 160 aa10.54□□□□□ -0.72
SIX3-201ENST00000260653 CRIPTQ9P021 101 aa10.5□□□□□ -0.73
SIX3-201ENST00000260653 MT1HP80294 61 aa10.44□□□□□ -0.74
SIX3-201ENST00000260653 LORP23490 312 aaPredicted RBP10.37□□□□□ -0.75
SIX3-201ENST00000260653 A0A0D9SG42 100 aa10.37□□□□□ -0.75
SIX3-201ENST00000260653 M0R2T5 61 aa10.36□□□□□ -0.75
SIX3-201ENST00000260653 M0QZ58 72 aa10.34□□□□□ -0.75
SIX3-201ENST00000260653 R4GN34 69 aa10.3□□□□□ -0.76
SIX3-201ENST00000260653 KRTAP12-2P59991 146 aa10.12□□□□□ -0.79
SIX3-201ENST00000260653 KRTAP12-1P59990 96 aa10.11□□□□□ -0.79
SIX3-201ENST00000260653 KRTAP9-8Q9BYQ0 159 aa10.07□□□□□ -0.8
SIX3-201ENST00000260653 MT2AP02795 61 aa10.07□□□□□ -0.8
SIX3-201ENST00000260653 MT1FP04733 61 aa10.03□□□□□ -0.8
SIX3-201ENST00000260653 KRTAP10-10P60014 251 aa9.99□□□□□ -0.81
SIX3-201ENST00000260653 LCE2AQ5TA79 106 aaPredicted RBP9.91□□□□□ -0.82
SIX3-201ENST00000260653 KRTAP19-1Q8IUB9 90 aa9.9□□□□□ -0.82
SIX3-201ENST00000260653 SPRR2GQ9BYE4 73 aa9.9□□□□□ -0.83
SIX3-201ENST00000260653 C10orf95Q9H7T3 257 aa9.85□□□□□ -0.83
SIX3-201ENST00000260653 CAMK2N1Q7Z7J9 78 aa9.8□□□□□ -0.84
SIX3-201ENST00000260653 KRTAP9-3Q9BYQ3 159 aa9.7□□□□□ -0.86
SIX3-201ENST00000260653 KRTAP19-8Q3LI54 63 aa9.6□□□□□ -0.87
SIX3-201ENST00000260653 PLAC4Q8WY50 150 aa9.59□□□□□ -0.87
SIX3-201ENST00000260653 MT1BP07438 61 aa9.52□□□□□ -0.89
SIX3-201ENST00000260653 LCE2BO14633 110 aa9.44□□□□□ -0.9
SIX3-201ENST00000260653 USH2AO75445 5202 aa9.25□□□□□ -0.93
SIX3-201ENST00000260653 PRO2289Q9P1D8 64 aa9.25□□□□□ -0.93
SIX3-201ENST00000260653 MT1XP80297 61 aa9.25□□□□□ -0.93
SIX3-201ENST00000260653 KRTAP10-5P60370 271 aa9.24□□□□□ -0.93
SIX3-201ENST00000260653 TNP1P09430 55 aa9.2□□□□□ -0.94
SIX3-201ENST00000260653 PP632Q6XCG6 107 aa8.95□□□□□ -0.98
SIX3-201ENST00000260653 FSIP2Q5CZC0 6907 aa8.92□□□□□ -0.98
SIX3-201ENST00000260653 KRTAP10-7P60409 375 aaPredicted RBP8.91□□□□□ -0.98
SIX3-201ENST00000260653 SSPOA2VEC9 5147 aa8.91□□□□□ -0.98
SIX3-201ENST00000260653 KRTAP23-1A1A580 65 aa8.88□□□□□ -0.99
SIX3-201ENST00000260653 LCE2DQ5TA82 110 aaPredicted RBP8.88□□□□□ -0.99
SIX3-201ENST00000260653 LCE3AQ5TA76 89 aa8.85□□□□□ -0.99
SIX3-201ENST00000260653 KRTAP10-12P60413 245 aa8.81□□□□□ -1
SIX3-201ENST00000260653 KRTAP19-6Q3LI70 58 aa8.76□□□□□ -1.01
SIX3-201ENST00000260653 INE1O15225 51 aa8.68□□□□□ -1.02
SIX3-201ENST00000260653 KMT2DO14686 5537 aa8.64□□□□□ -1.03
SIX3-201ENST00000260653 KRTAP8-1Q8IUC2 63 aa8.61□□□□□ -1.03
SIX3-201ENST00000260653 KRTAP4-8A0A0G2JLE6 195 aa8.55□□□□□ -1.04
SIX3-201ENST00000260653 KRTAP4-8Q9BYQ9 185 aa8.55□□□□□ -1.04
SIX3-201ENST00000260653 KRTAP9-2Q9BYQ4 174 aa8.53□□□□□ -1.04
SIX3-201ENST00000260653 FCGBPQ9Y6R7 5405 aaPredicted RBP8.5□□□□□ -1.05
SIX3-201ENST00000260653 KRTAP12-3P60328 96 aa8.46□□□□□ -1.06
SIX3-201ENST00000260653 KRTAP19-5Q3LI72 72 aa8.39□□□□□ -1.07
SIX3-201ENST00000260653 SPRR5A0A1B0GTR4 108 aa8.37□□□□□ -1.07
SIX3-201ENST00000260653 KRTAP19-7Q3SYF9 63 aa8.25□□□□□ -1.09
SIX3-201ENST00000260653 CRCT1Q9UGL9 99 aa8.23□□□□□ -1.09
SIX3-201ENST00000260653 MACF1Q9UPN3 7388 aaKnown RBP8.11□□□□□ -1.11
SIX3-201ENST00000260653 MT1EP04732 61 aa8.08□□□□□ -1.12
SIX3-201ENST00000260653 MT1LQ93083 61 aa7.94□□□□□ -1.14
SIX3-201ENST00000260653 MUC12Q9UKN1 5478 aa7.92□□□□□ -1.14
SIX3-201ENST00000260653 LCE3CQ5T5A8 94 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 160.1 ms