RNA–Protein interactions for RNA: ENST00000244670.12

KLHDC3-201, Transcript of kelch domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene KLHDC3, Length 1,903 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3-201ENST00000244670 A0A1B0GU69 56 aa9.27□□□□□ -0.93
KLHDC3-201ENST00000244670 LCA10Q71F78 164 aa9.27□□□□□ -0.93
KLHDC3-201ENST00000244670 HMCN2Q8NDA2 5059 aa9.25□□□□□ -0.93
KLHDC3-201ENST00000244670 CDC42SE1Q9NRR8 79 aa9.24□□□□□ -0.93
KLHDC3-201ENST00000244670 COX6B2Q6YFQ2 88 aa9.21□□□□□ -0.93
KLHDC3-201ENST00000244670 SEC61BP60468 96 aaKnown RBP9.21□□□□□ -0.94
KLHDC3-201ENST00000244670 SPTSSBQ8NFR3 76 aa9.18□□□□□ -0.94
KLHDC3-201ENST00000244670 MUC17Q685J3 4493 aa9.17□□□□□ -0.94
KLHDC3-201ENST00000244670 PMAIP1Q13794 54 aa9.11□□□□□ -0.95
KLHDC3-201ENST00000244670 KRTAP4-1Q9BYQ7 146 aa9.1□□□□□ -0.95
KLHDC3-201ENST00000244670 SEC61GP60059 68 aa9.09□□□□□ -0.95
KLHDC3-201ENST00000244670 UQCR11O14957 56 aa9.06□□□□□ -0.96
KLHDC3-201ENST00000244670 RBM12B-AS1Q9P1G2 102 aa9.03□□□□□ -0.96
KLHDC3-201ENST00000244670 MIR22HGQ0VDD5 57 aa9.01□□□□□ -0.97
KLHDC3-201ENST00000244670 SPATA8Q6RVD6 105 aa9.01□□□□□ -0.97
KLHDC3-201ENST00000244670 MUC2Q02817 5179 aa8.98□□□□□ -0.97
KLHDC3-201ENST00000244670 H1FX-AS1Q4G0G2 97 aa8.97□□□□□ -0.97
KLHDC3-201ENST00000244670 KRTAP3-3Q9BYR6 98 aa8.95□□□□□ -0.98
KLHDC3-201ENST00000244670 A6NN06 94 aa8.95□□□□□ -0.98
KLHDC3-201ENST00000244670 S4R3F8 94 aa8.95□□□□□ -0.98
KLHDC3-201ENST00000244670 UBR4Q5T4S7 5183 aa8.88□□□□□ -0.99
KLHDC3-201ENST00000244670 A0A1B0GU33 70 aa8.84□□□□□ -0.99
KLHDC3-201ENST00000244670 KTN1-AS1Q86SY8 53 aa8.84□□□□□ -1
KLHDC3-201ENST00000244670 KRTAP19-2Q3LHN2 52 aa8.81□□□□□ -1
KLHDC3-201ENST00000244670 RNF213Q63HN8 5207 aa8.81□□□□□ -1
KLHDC3-201ENST00000244670 H0YAA0 97 aa8.78□□□□□ -1
KLHDC3-201ENST00000244670 CSAG1Q6PB30 78 aa8.71□□□□□ -1.02
KLHDC3-201ENST00000244670 FLGP20930 4061 aaPredicted RBP8.71□□□□□ -1.02
KLHDC3-201ENST00000244670 KRTAP10-6P60371 365 aaPredicted RBP8.7□□□□□ -1.02
KLHDC3-201ENST00000244670 KRTAP3-2Q9BYR7 98 aa8.69□□□□□ -1.02
KLHDC3-201ENST00000244670 FAT4Q6V0I7 4981 aa8.61□□□□□ -1.03
KLHDC3-201ENST00000244670 P0C880 135 aa8.6□□□□□ -1.03
KLHDC3-201ENST00000244670 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
KLHDC3-201ENST00000244670 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
KLHDC3-201ENST00000244670 KRTAP13-4Q3LI77 160 aa8.53□□□□□ -1.04
KLHDC3-201ENST00000244670 K7ERS5 55 aa8.51□□□□□ -1.05
KLHDC3-201ENST00000244670 PRAC1Q96KF2 57 aa8.5□□□□□ -1.05
KLHDC3-201ENST00000244670 A0A0D9SG42 100 aa8.44□□□□□ -1.06
KLHDC3-201ENST00000244670 MT1HP80294 61 aa8.42□□□□□ -1.06
KLHDC3-201ENST00000244670 M0R2T5 61 aa8.39□□□□□ -1.07
KLHDC3-201ENST00000244670 LORP23490 312 aaPredicted RBP8.33□□□□□ -1.08
KLHDC3-201ENST00000244670 M0QZ58 72 aa8.31□□□□□ -1.08
KLHDC3-201ENST00000244670 R4GN34 69 aa8.25□□□□□ -1.09
KLHDC3-201ENST00000244670 KRTAP12-2P59991 146 aa8.23□□□□□ -1.09
KLHDC3-201ENST00000244670 ROMO1P60602 79 aa8.23□□□□□ -1.09
KLHDC3-201ENST00000244670 SPINT4Q6UDR6 99 aa8.2□□□□□ -1.1
KLHDC3-201ENST00000244670 KRTAP12-1P59990 96 aa8.19□□□□□ -1.1
KLHDC3-201ENST00000244670 LINC01554Q52M75 96 aa8.18□□□□□ -1.1
KLHDC3-201ENST00000244670 KRTAP25-1Q3LHN0 102 aa8.15□□□□□ -1.11
KLHDC3-201ENST00000244670 MT2AP02795 61 aa8.11□□□□□ -1.11
KLHDC3-201ENST00000244670 KRTAP9-8Q9BYQ0 159 aa8.11□□□□□ -1.11
KLHDC3-201ENST00000244670 CRIPTQ9P021 101 aa8.1□□□□□ -1.11
KLHDC3-201ENST00000244670 MT1FP04733 61 aa8.08□□□□□ -1.12
KLHDC3-201ENST00000244670 KRTAP10-10P60014 251 aa8.05□□□□□ -1.12
KLHDC3-201ENST00000244670 LCE2AQ5TA79 106 aaPredicted RBP8.01□□□□□ -1.13
KLHDC3-201ENST00000244670 KRTAP19-1Q8IUB9 90 aa7.94□□□□□ -1.14
KLHDC3-201ENST00000244670 SPRR2GQ9BYE4 73 aa7.92□□□□□ -1.14
KLHDC3-201ENST00000244670 C10orf95Q9H7T3 257 aa7.88□□□□□ -1.15
KLHDC3-201ENST00000244670 KRTAP9-3Q9BYQ3 159 aa7.81□□□□□ -1.16
KLHDC3-201ENST00000244670 CAMK2N1Q7Z7J9 78 aa7.75□□□□□ -1.17
KLHDC3-201ENST00000244670 PLAC4Q8WY50 150 aa7.72□□□□□ -1.17
KLHDC3-201ENST00000244670 KRTAP19-8Q3LI54 63 aa7.7□□□□□ -1.18
KLHDC3-201ENST00000244670 MT1BP07438 61 aa7.64□□□□□ -1.19
KLHDC3-201ENST00000244670 LCE2BO14633 110 aa7.61□□□□□ -1.19
KLHDC3-201ENST00000244670 USH2AO75445 5202 aa7.49□□□□□ -1.21
KLHDC3-201ENST00000244670 PP632Q6XCG6 107 aa7.42□□□□□ -1.22
KLHDC3-201ENST00000244670 TNP1P09430 55 aa7.41□□□□□ -1.22
KLHDC3-201ENST00000244670 MT1XP80297 61 aa7.41□□□□□ -1.22
KLHDC3-201ENST00000244670 KRTAP10-5P60370 271 aa7.4□□□□□ -1.22
KLHDC3-201ENST00000244670 KRTAP15-1Q3LI76 137 aa7.33□□□□□ -1.24
KLHDC3-201ENST00000244670 PRO2289Q9P1D8 64 aa7.27□□□□□ -1.25
KLHDC3-201ENST00000244670 SSPOA2VEC9 5147 aa7.25□□□□□ -1.25
KLHDC3-201ENST00000244670 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
KLHDC3-201ENST00000244670 FSIP2Q5CZC0 6907 aa7.23□□□□□ -1.25
KLHDC3-201ENST00000244670 LCE2DQ5TA82 110 aaPredicted RBP7.2□□□□□ -1.26
KLHDC3-201ENST00000244670 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
KLHDC3-201ENST00000244670 LCE3AQ5TA76 89 aa7.1□□□□□ -1.27
KLHDC3-201ENST00000244670 KRTAP19-6Q3LI70 58 aa7.07□□□□□ -1.28
KLHDC3-201ENST00000244670 KRTAP10-12P60413 245 aa7.06□□□□□ -1.28
KLHDC3-201ENST00000244670 NDUFAF8A1L188 74 aa7.03□□□□□ -1.28
KLHDC3-201ENST00000244670 KMT2DO14686 5537 aa6.97□□□□□ -1.29
KLHDC3-201ENST00000244670 KRTAP9-2Q9BYQ4 174 aa6.95□□□□□ -1.3
KLHDC3-201ENST00000244670 H3BS24 57 aa6.94□□□□□ -1.3
KLHDC3-201ENST00000244670 KRTAP8-1Q8IUC2 63 aa6.92□□□□□ -1.3
KLHDC3-201ENST00000244670 KRTAP4-8A0A0G2JLE6 195 aa6.88□□□□□ -1.31
KLHDC3-201ENST00000244670 KRTAP4-8Q9BYQ9 185 aa6.88□□□□□ -1.31
KLHDC3-201ENST00000244670 FCGBPQ9Y6R7 5405 aaPredicted RBP6.88□□□□□ -1.31
KLHDC3-201ENST00000244670 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
KLHDC3-201ENST00000244670 KRTAP12-3P60328 96 aa6.77□□□□□ -1.33
KLHDC3-201ENST00000244670 SPRR5A0A1B0GTR4 108 aa6.75□□□□□ -1.33
KLHDC3-201ENST00000244670 KRTAP19-5Q3LI72 72 aa6.74□□□□□ -1.33
KLHDC3-201ENST00000244670 CRCT1Q9UGL9 99 aa6.71□□□□□ -1.34
KLHDC3-201ENST00000244670 KRTAP19-7Q3SYF9 63 aa6.61□□□□□ -1.35
KLHDC3-201ENST00000244670 MACF1Q9UPN3 7388 aaKnown RBP6.59□□□□□ -1.36
KLHDC3-201ENST00000244670 MT1EP04732 61 aa6.48□□□□□ -1.37
KLHDC3-201ENST00000244670 SYNE2Q8WXH0 6885 aaKnown RBP6.45□□□□□ -1.38
KLHDC3-201ENST00000244670 MUC12Q9UKN1 5478 aa6.39□□□□□ -1.39
KLHDC3-201ENST00000244670 MT1LQ93083 61 aa6.37□□□□□ -1.39
KLHDC3-201ENST00000244670 KRTAP9-6A0A140TA67 174 aa6.36□□□□□ -1.39
KLHDC3-201ENST00000244670 SPRR2FQ96RM1 72 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms