RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 CHKB-CPT1BH3BT56 60 aa6.85□□□□□ -1.31
SLIRP-201ENST00000238688 Q1T7F1 81 aa6.84□□□□□ -1.31
SLIRP-201ENST00000238688 C4orf26Q17RF5 130 aa6.83□□□□□ -1.32
SLIRP-201ENST00000238688 SPTSSBQ8NFR3 76 aa6.83□□□□□ -1.32
SLIRP-201ENST00000238688 KRTAP19-2Q3LHN2 52 aa6.79□□□□□ -1.32
SLIRP-201ENST00000238688 LCE2CQ5TA81 110 aa6.79□□□□□ -1.32
SLIRP-201ENST00000238688 MPLKIPQ8TAP9 179 aa6.76□□□□□ -1.33
SLIRP-201ENST00000238688 RBM12B-AS1Q9P1G2 102 aa6.76□□□□□ -1.33
SLIRP-201ENST00000238688 KRTAP3-1Q9BYR8 98 aa6.73□□□□□ -1.33
SLIRP-201ENST00000238688 LINC01558Q9Y6Z2 57 aa6.73□□□□□ -1.33
SLIRP-201ENST00000238688 LCE2BO14633 110 aa6.72□□□□□ -1.33
SLIRP-201ENST00000238688 KRTAP9-6A0A140TA67 174 aa6.69□□□□□ -1.34
SLIRP-201ENST00000238688 H1FX-AS1Q4G0G2 97 aa6.68□□□□□ -1.34
SLIRP-201ENST00000238688 PRR15LQ9BU68 103 aa6.68□□□□□ -1.34
SLIRP-201ENST00000238688 MT1HP80294 61 aa6.66□□□□□ -1.34
SLIRP-201ENST00000238688 S4R3F8 94 aa6.62□□□□□ -1.35
SLIRP-201ENST00000238688 FLGP20930 4061 aaPredicted RBP6.61□□□□□ -1.35
SLIRP-201ENST00000238688 SEC61GP60059 68 aa6.61□□□□□ -1.35
SLIRP-201ENST00000238688 A0A1B0GU69 56 aa6.58□□□□□ -1.36
SLIRP-201ENST00000238688 PSPHP1O15172 72 aa6.56□□□□□ -1.36
SLIRP-201ENST00000238688 LORP23490 312 aaPredicted RBP6.56□□□□□ -1.36
SLIRP-201ENST00000238688 Q5VV11 94 aa6.56□□□□□ -1.36
SLIRP-201ENST00000238688 FSIP2Q5CZC0 6907 aa6.54□□□□□ -1.36
SLIRP-201ENST00000238688 KRTAP10-6P60371 365 aaPredicted RBP6.54□□□□□ -1.36
SLIRP-201ENST00000238688 LCA10Q71F78 164 aa6.54□□□□□ -1.36
SLIRP-201ENST00000238688 CSAG1Q6PB30 78 aa6.51□□□□□ -1.37
SLIRP-201ENST00000238688 CRCT1Q9UGL9 99 aa6.51□□□□□ -1.37
SLIRP-201ENST00000238688 H0YAA0 97 aa6.46□□□□□ -1.38
SLIRP-201ENST00000238688 UQCR11O14957 56 aa6.45□□□□□ -1.38
SLIRP-201ENST00000238688 A6NED7 52 aa6.44□□□□□ -1.38
SLIRP-201ENST00000238688 M0R2T5 61 aa6.42□□□□□ -1.38
SLIRP-201ENST00000238688 CDC42SE1Q9NRR8 79 aa6.4□□□□□ -1.38
SLIRP-201ENST00000238688 BRK1Q8WUW1 75 aa6.38□□□□□ -1.39
SLIRP-201ENST00000238688 PRO0628Q9UI54 55 aa6.38□□□□□ -1.39
SLIRP-201ENST00000238688 A0A1B0GU33 70 aa6.36□□□□□ -1.39
SLIRP-201ENST00000238688 SPATA8Q6RVD6 105 aa6.35□□□□□ -1.39
SLIRP-201ENST00000238688 MIR22HGQ0VDD5 57 aa6.32□□□□□ -1.4
SLIRP-201ENST00000238688 KRTAP9-8Q9BYQ0 159 aa6.32□□□□□ -1.4
SLIRP-201ENST00000238688 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
SLIRP-201ENST00000238688 M0QZ58 72 aa6.26□□□□□ -1.41
SLIRP-201ENST00000238688 USH2AO75445 5202 aa6.24□□□□□ -1.41
SLIRP-201ENST00000238688 SSPOA2VEC9 5147 aa6.21□□□□□ -1.41
SLIRP-201ENST00000238688 MT2AP02795 61 aa6.2□□□□□ -1.42
SLIRP-201ENST00000238688 P0C880 135 aa6.2□□□□□ -1.42
SLIRP-201ENST00000238688 CRIPTQ9P021 101 aa6.19□□□□□ -1.42
SLIRP-201ENST00000238688 MT1FP04733 61 aa6.16□□□□□ -1.42
SLIRP-201ENST00000238688 K7ERS5 55 aa6.15□□□□□ -1.42
SLIRP-201ENST00000238688 KRTAP9-3Q9BYQ3 159 aa6.12□□□□□ -1.43
SLIRP-201ENST00000238688 R4GN34 69 aa6.12□□□□□ -1.43
SLIRP-201ENST00000238688 A8MU10 97 aa6.1□□□□□ -1.43
SLIRP-201ENST00000238688 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
SLIRP-201ENST00000238688 PMAIP1Q13794 54 aa6.08□□□□□ -1.44
SLIRP-201ENST00000238688 KRTAP13-4Q3LI77 160 aa6.07□□□□□ -1.44
SLIRP-201ENST00000238688 FCGBPQ9Y6R7 5405 aaPredicted RBP6.07□□□□□ -1.44
SLIRP-201ENST00000238688 KRTAP10-10P60014 251 aa6.05□□□□□ -1.44
SLIRP-201ENST00000238688 A6NN06 94 aa6.04□□□□□ -1.44
SLIRP-201ENST00000238688 KRTAP19-1Q8IUB9 90 aa6.02□□□□□ -1.45
SLIRP-201ENST00000238688 KRTAP9-7A8MTY7 169 aa6.01□□□□□ -1.45
SLIRP-201ENST00000238688 SVIPQ8NHG7 77 aa5.98□□□□□ -1.45
SLIRP-201ENST00000238688 A0A0D9SG42 100 aa5.96□□□□□ -1.46
SLIRP-201ENST00000238688 SPRR2GQ9BYE4 73 aa5.93□□□□□ -1.46
SLIRP-201ENST00000238688 KRTAP12-1P59990 96 aa5.92□□□□□ -1.46
SLIRP-201ENST00000238688 KRTAP19-6Q3LI70 58 aa5.9□□□□□ -1.46
SLIRP-201ENST00000238688 KTN1-AS1Q86SY8 53 aa5.89□□□□□ -1.47
SLIRP-201ENST00000238688 LINC01554Q52M75 96 aa5.87□□□□□ -1.47
SLIRP-201ENST00000238688 KRTAP12-2P59991 146 aa5.86□□□□□ -1.47
SLIRP-201ENST00000238688 SPINT4Q6UDR6 99 aa5.86□□□□□ -1.47
SLIRP-201ENST00000238688 MACF1Q9UPN3 7388 aaKnown RBP5.85□□□□□ -1.47
SLIRP-201ENST00000238688 SYNE2Q8WXH0 6885 aaKnown RBP5.83□□□□□ -1.48
SLIRP-201ENST00000238688 ROMO1P60602 79 aa5.81□□□□□ -1.48
SLIRP-201ENST00000238688 KRTAP19-8Q3LI54 63 aa5.75□□□□□ -1.49
SLIRP-201ENST00000238688 PLAC4Q8WY50 150 aa5.75□□□□□ -1.49
SLIRP-201ENST00000238688 LOC100996750A0A140TA64 210 aa5.73□□□□□ -1.49
SLIRP-201ENST00000238688 KRTAP4-6Q9BYQ5 205 aa5.73□□□□□ -1.49
SLIRP-201ENST00000238688 CAMK2N1Q7Z7J9 78 aa5.72□□□□□ -1.49
SLIRP-201ENST00000238688 MT1BP07438 61 aa5.65□□□□□ -1.5
SLIRP-201ENST00000238688 KRTAP6-3Q3LI67 103 aa5.65□□□□□ -1.5
SLIRP-201ENST00000238688 KRTAP25-1Q3LHN0 102 aa5.61□□□□□ -1.51
SLIRP-201ENST00000238688 C10orf95Q9H7T3 257 aa5.57□□□□□ -1.52
SLIRP-201ENST00000238688 PRAC1Q96KF2 57 aa5.53□□□□□ -1.52
SLIRP-201ENST00000238688 PRO2289Q9P1D8 64 aa5.52□□□□□ -1.53
SLIRP-201ENST00000238688 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
SLIRP-201ENST00000238688 TNP1P09430 55 aa5.51□□□□□ -1.53
SLIRP-201ENST00000238688 KRTAP10-5P60370 271 aa5.5□□□□□ -1.53
SLIRP-201ENST00000238688 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
SLIRP-201ENST00000238688 NEBP20929 6669 aa5.49□□□□□ -1.53
SLIRP-201ENST00000238688 MUC12Q9UKN1 5478 aa5.46□□□□□ -1.54
SLIRP-201ENST00000238688 MT1XP80297 61 aa5.41□□□□□ -1.54
SLIRP-201ENST00000238688 KRTAP5-9P26371 169 aa5.38□□□□□ -1.55
SLIRP-201ENST00000238688 KMT2DO14686 5537 aa5.33□□□□□ -1.56
SLIRP-201ENST00000238688 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
SLIRP-201ENST00000238688 MDN1Q9NU22 5596 aa5.27□□□□□ -1.57
SLIRP-201ENST00000238688 KRTAP20-1Q3LI63 56 aa5.24□□□□□ -1.57
SLIRP-201ENST00000238688 KRTAP10-12P60413 245 aa5.22□□□□□ -1.57
SLIRP-201ENST00000238688 KRTAP8-1Q8IUC2 63 aa5.16□□□□□ -1.58
SLIRP-201ENST00000238688 SPRR2FQ96RM1 72 aa5.14□□□□□ -1.59
SLIRP-201ENST00000238688 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
SLIRP-201ENST00000238688 LCE3AQ5TA76 89 aa5.13□□□□□ -1.59
SLIRP-201ENST00000238688 LCE3BQ5TA77 95 aa5.1□□□□□ -1.59
SLIRP-201ENST00000238688 KRTAP2-3P0C7H8 128 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms