RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 PRO0628Q9UI54 55 aa11.56□□□□□ -0.56
CDX1-201ENST00000231656 KRTAP4-1Q9BYQ7 146 aa11.54□□□□□ -0.56
CDX1-201ENST00000231656 SPTSSBQ8NFR3 76 aa11.53□□□□□ -0.56
CDX1-201ENST00000231656 A0A1B0GU69 56 aa11.52□□□□□ -0.57
CDX1-201ENST00000231656 UBR4Q5T4S7 5183 aa11.5□□□□□ -0.57
CDX1-201ENST00000231656 A6NED7 52 aa11.49□□□□□ -0.57
CDX1-201ENST00000231656 MUC2Q02817 5179 aa11.47□□□□□ -0.57
CDX1-201ENST00000231656 SVIPQ8NHG7 77 aa11.44□□□□□ -0.58
CDX1-201ENST00000231656 A8MU10 97 aa11.41□□□□□ -0.58
CDX1-201ENST00000231656 LCA10Q71F78 164 aa11.41□□□□□ -0.58
CDX1-201ENST00000231656 CDC42SE1Q9NRR8 79 aa11.36□□□□□ -0.59
CDX1-201ENST00000231656 KRTAP3-3Q9BYR6 98 aa11.33□□□□□ -0.59
CDX1-201ENST00000231656 RNF213Q63HN8 5207 aa11.33□□□□□ -0.6
CDX1-201ENST00000231656 SEC61GP60059 68 aa11.31□□□□□ -0.6
CDX1-201ENST00000231656 RBM12B-AS1Q9P1G2 102 aa11.31□□□□□ -0.6
CDX1-201ENST00000231656 H1FX-AS1Q4G0G2 97 aa11.29□□□□□ -0.6
CDX1-201ENST00000231656 S4R3F8 94 aa11.29□□□□□ -0.6
CDX1-201ENST00000231656 UQCR11O14957 56 aa11.23□□□□□ -0.61
CDX1-201ENST00000231656 KRTAP19-2Q3LHN2 52 aa11.2□□□□□ -0.62
CDX1-201ENST00000231656 SPATA8Q6RVD6 105 aa11.19□□□□□ -0.62
CDX1-201ENST00000231656 MIR22HGQ0VDD5 57 aa11.15□□□□□ -0.62
CDX1-201ENST00000231656 A0A1B0GU33 70 aa11.08□□□□□ -0.64
CDX1-201ENST00000231656 KRTAP10-6P60371 365 aaPredicted RBP11.03□□□□□ -0.64
CDX1-201ENST00000231656 LCE2CQ5TA81 110 aa11.03□□□□□ -0.64
CDX1-201ENST00000231656 KRTAP3-2Q9BYR7 98 aa11.03□□□□□ -0.64
CDX1-201ENST00000231656 FLGP20930 4061 aaPredicted RBP11.02□□□□□ -0.65
CDX1-201ENST00000231656 H0YAA0 97 aa11.01□□□□□ -0.65
CDX1-201ENST00000231656 FAT4Q6V0I7 4981 aa11.01□□□□□ -0.65
CDX1-201ENST00000231656 PMAIP1Q13794 54 aa11□□□□□ -0.65
CDX1-201ENST00000231656 CSAG1Q6PB30 78 aa10.98□□□□□ -0.65
CDX1-201ENST00000231656 A6NN06 94 aa10.95□□□□□ -0.66
CDX1-201ENST00000231656 P0C880 135 aa10.88□□□□□ -0.67
CDX1-201ENST00000231656 ADM2Q7Z4H4 148 aa10.85□□□□□ -0.67
CDX1-201ENST00000231656 MT1HP80294 61 aa10.82□□□□□ -0.68
CDX1-201ENST00000231656 KRTAP13-4Q3LI77 160 aa10.8□□□□□ -0.68
CDX1-201ENST00000231656 M0R2T5 61 aa10.69□□□□□ -0.7
CDX1-201ENST00000231656 KTN1-AS1Q86SY8 53 aa10.67□□□□□ -0.7
CDX1-201ENST00000231656 A0A0D9SG42 100 aa10.58□□□□□ -0.72
CDX1-201ENST00000231656 M0QZ58 72 aa10.57□□□□□ -0.72
CDX1-201ENST00000231656 LCE2AQ5TA79 106 aaPredicted RBP10.56□□□□□ -0.72
CDX1-201ENST00000231656 K7ERS5 55 aa10.52□□□□□ -0.73
CDX1-201ENST00000231656 LORP23490 312 aaPredicted RBP10.44□□□□□ -0.74
CDX1-201ENST00000231656 R4GN34 69 aa10.4□□□□□ -0.74
CDX1-201ENST00000231656 KRTAP9-8Q9BYQ0 159 aa10.39□□□□□ -0.75
CDX1-201ENST00000231656 KRTAP12-1P59990 96 aa10.38□□□□□ -0.75
CDX1-201ENST00000231656 KRTAP12-2P59991 146 aa10.38□□□□□ -0.75
CDX1-201ENST00000231656 MT2AP02795 61 aa10.33□□□□□ -0.76
CDX1-201ENST00000231656 PRAC1Q96KF2 57 aa10.33□□□□□ -0.76
CDX1-201ENST00000231656 SPINT4Q6UDR6 99 aa10.29□□□□□ -0.76
CDX1-201ENST00000231656 MT1FP04733 61 aa10.26□□□□□ -0.77
CDX1-201ENST00000231656 LINC01554Q52M75 96 aa10.26□□□□□ -0.77
CDX1-201ENST00000231656 KRTAP10-10P60014 251 aa10.24□□□□□ -0.77
CDX1-201ENST00000231656 ROMO1P60602 79 aa10.21□□□□□ -0.78
CDX1-201ENST00000231656 CRIPTQ9P021 101 aa10.16□□□□□ -0.78
CDX1-201ENST00000231656 KRTAP9-3Q9BYQ3 159 aa10.02□□□□□ -0.81
CDX1-201ENST00000231656 SPRR2GQ9BYE4 73 aa10.01□□□□□ -0.81
CDX1-201ENST00000231656 KRTAP19-1Q8IUB9 90 aa10.01□□□□□ -0.81
CDX1-201ENST00000231656 KRTAP25-1Q3LHN0 102 aa9.98□□□□□ -0.81
CDX1-201ENST00000231656 C10orf95Q9H7T3 257 aa9.81□□□□□ -0.84
CDX1-201ENST00000231656 LCE2BO14633 110 aa9.79□□□□□ -0.84
CDX1-201ENST00000231656 CAMK2N1Q7Z7J9 78 aa9.78□□□□□ -0.84
CDX1-201ENST00000231656 KRTAP19-8Q3LI54 63 aa9.78□□□□□ -0.84
CDX1-201ENST00000231656 MT1BP07438 61 aa9.67□□□□□ -0.86
CDX1-201ENST00000231656 LCE2DQ5TA82 110 aaPredicted RBP9.65□□□□□ -0.86
CDX1-201ENST00000231656 PLAC4Q8WY50 150 aa9.63□□□□□ -0.87
CDX1-201ENST00000231656 USH2AO75445 5202 aa9.59□□□□□ -0.87
CDX1-201ENST00000231656 KRTAP9-2Q9BYQ4 174 aa9.41□□□□□ -0.9
CDX1-201ENST00000231656 TNP1P09430 55 aa9.37□□□□□ -0.91
CDX1-201ENST00000231656 FSIP2Q5CZC0 6907 aa9.37□□□□□ -0.91
CDX1-201ENST00000231656 SSPOA2VEC9 5147 aa9.33□□□□□ -0.92
CDX1-201ENST00000231656 MT1XP80297 61 aa9.31□□□□□ -0.92
CDX1-201ENST00000231656 KRTAP10-5P60370 271 aa9.29□□□□□ -0.92
CDX1-201ENST00000231656 PP632Q6XCG6 107 aa9.29□□□□□ -0.92
CDX1-201ENST00000231656 KRTAP19-6Q3LI70 58 aa9.22□□□□□ -0.93
CDX1-201ENST00000231656 PRO2289Q9P1D8 64 aa9.22□□□□□ -0.93
CDX1-201ENST00000231656 KRTAP23-1A1A580 65 aa9.2□□□□□ -0.94
CDX1-201ENST00000231656 CRCT1Q9UGL9 99 aa9.04□□□□□ -0.96
CDX1-201ENST00000231656 FCGBPQ9Y6R7 5405 aaPredicted RBP8.99□□□□□ -0.97
CDX1-201ENST00000231656 LCE3AQ5TA76 89 aa8.97□□□□□ -0.97
CDX1-201ENST00000231656 KRTAP15-1Q3LI76 137 aa8.95□□□□□ -0.98
CDX1-201ENST00000231656 KRTAP10-7P60409 375 aaPredicted RBP8.93□□□□□ -0.98
CDX1-201ENST00000231656 KRTAP10-12P60413 245 aa8.86□□□□□ -0.99
CDX1-201ENST00000231656 KRTAP8-1Q8IUC2 63 aa8.79□□□□□ -1
CDX1-201ENST00000231656 KRTAP9-6A0A140TA67 174 aa8.74□□□□□ -1.01
CDX1-201ENST00000231656 KMT2DO14686 5537 aa8.73□□□□□ -1.01
CDX1-201ENST00000231656 KRTAP4-8A0A0G2JLE6 195 aa8.65□□□□□ -1.02
CDX1-201ENST00000231656 KRTAP4-8Q9BYQ9 185 aa8.65□□□□□ -1.02
CDX1-201ENST00000231656 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
CDX1-201ENST00000231656 MACF1Q9UPN3 7388 aaKnown RBP8.58□□□□□ -1.04
CDX1-201ENST00000231656 SPRR5A0A1B0GTR4 108 aa8.45□□□□□ -1.06
CDX1-201ENST00000231656 KRTAP19-5Q3LI72 72 aa8.44□□□□□ -1.06
CDX1-201ENST00000231656 NDUFAF8A1L188 74 aa8.38□□□□□ -1.07
CDX1-201ENST00000231656 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.38□□□□□ -1.07
CDX1-201ENST00000231656 SYNE2Q8WXH0 6885 aaKnown RBP8.33□□□□□ -1.08
CDX1-201ENST00000231656 KRTAP19-7Q3SYF9 63 aa8.31□□□□□ -1.08
CDX1-201ENST00000231656 LUZP6Q538Z0 58 aa8.24□□□□□ -1.09
CDX1-201ENST00000231656 SPRR2FQ96RM1 72 aa8.18□□□□□ -1.1
CDX1-201ENST00000231656 MT1EP04732 61 aa8.17□□□□□ -1.1
CDX1-201ENST00000231656 KRTAP5-9P26371 169 aa8.16□□□□□ -1.1
CDX1-201ENST00000231656 MUC12Q9UKN1 5478 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms