RNA–Protein interactions for RNA: ENST00000225603.8

CBX1-201, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-201ENST00000225603 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
CBX1-201ENST00000225603 MUC17Q685J3 4493 aa9.36□□□□□ -0.91
CBX1-201ENST00000225603 LCA10Q71F78 164 aa9.34□□□□□ -0.91
CBX1-201ENST00000225603 KRTAP4-1Q9BYQ7 146 aa9.33□□□□□ -0.92
CBX1-201ENST00000225603 CDC42SE1Q9NRR8 79 aa9.31□□□□□ -0.92
CBX1-201ENST00000225603 A0A1B0GU69 56 aa9.28□□□□□ -0.92
CBX1-201ENST00000225603 KRTAP3-1Q9BYR8 98 aa9.23□□□□□ -0.93
CBX1-201ENST00000225603 SPTSSBQ8NFR3 76 aa9.2□□□□□ -0.94
CBX1-201ENST00000225603 UBR4Q5T4S7 5183 aa9.19□□□□□ -0.94
CBX1-201ENST00000225603 MUC2Q02817 5179 aa9.18□□□□□ -0.94
CBX1-201ENST00000225603 PMAIP1Q13794 54 aa9.16□□□□□ -0.94
CBX1-201ENST00000225603 COX6B2Q6YFQ2 88 aa9.13□□□□□ -0.95
CBX1-201ENST00000225603 UQCR11O14957 56 aa9.08□□□□□ -0.96
CBX1-201ENST00000225603 RNF213Q63HN8 5207 aa9.07□□□□□ -0.96
CBX1-201ENST00000225603 SEC61GP60059 68 aa9.07□□□□□ -0.96
CBX1-201ENST00000225603 SPATA8Q6RVD6 105 aa9.07□□□□□ -0.96
CBX1-201ENST00000225603 A6NN06 94 aa9.05□□□□□ -0.96
CBX1-201ENST00000225603 RBM12B-AS1Q9P1G2 102 aa9.05□□□□□ -0.96
CBX1-201ENST00000225603 MIR22HGQ0VDD5 57 aa9.04□□□□□ -0.96
CBX1-201ENST00000225603 KRTAP19-2Q3LHN2 52 aa9.03□□□□□ -0.96
CBX1-201ENST00000225603 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
CBX1-201ENST00000225603 KTN1-AS1Q86SY8 53 aa8.92□□□□□ -0.98
CBX1-201ENST00000225603 LCE2CQ5TA81 110 aa8.88□□□□□ -0.99
CBX1-201ENST00000225603 KRTAP3-3Q9BYR6 98 aa8.86□□□□□ -0.99
CBX1-201ENST00000225603 A0A1B0GU33 70 aa8.85□□□□□ -0.99
CBX1-201ENST00000225603 S4R3F8 94 aa8.85□□□□□ -0.99
CBX1-201ENST00000225603 H0YAA0 97 aa8.83□□□□□ -1
CBX1-201ENST00000225603 FAT4Q6V0I7 4981 aa8.8□□□□□ -1
CBX1-201ENST00000225603 FLGP20930 4061 aaPredicted RBP8.79□□□□□ -1
CBX1-201ENST00000225603 KRTAP10-6P60371 365 aaPredicted RBP8.7□□□□□ -1.02
CBX1-201ENST00000225603 MT1HP80294 61 aa8.69□□□□□ -1.02
CBX1-201ENST00000225603 KRTAP3-2Q9BYR7 98 aa8.67□□□□□ -1.02
CBX1-201ENST00000225603 CSAG1Q6PB30 78 aa8.66□□□□□ -1.02
CBX1-201ENST00000225603 ADM2Q7Z4H4 148 aa8.6□□□□□ -1.03
CBX1-201ENST00000225603 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
CBX1-201ENST00000225603 M0R2T5 61 aa8.56□□□□□ -1.04
CBX1-201ENST00000225603 P0C880 135 aa8.56□□□□□ -1.04
CBX1-201ENST00000225603 KRTAP13-4Q3LI77 160 aa8.56□□□□□ -1.04
CBX1-201ENST00000225603 LCE2DQ5TA82 110 aaPredicted RBP8.52□□□□□ -1.05
CBX1-201ENST00000225603 K7ERS5 55 aa8.49□□□□□ -1.05
CBX1-201ENST00000225603 LCE2AQ5TA79 106 aaPredicted RBP8.46□□□□□ -1.06
CBX1-201ENST00000225603 A0A0D9SG42 100 aa8.45□□□□□ -1.06
CBX1-201ENST00000225603 KRTAP9-8Q9BYQ0 159 aa8.36□□□□□ -1.07
CBX1-201ENST00000225603 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
CBX1-201ENST00000225603 MT2AP02795 61 aa8.31□□□□□ -1.08
CBX1-201ENST00000225603 M0QZ58 72 aa8.31□□□□□ -1.08
CBX1-201ENST00000225603 MT1FP04733 61 aa8.28□□□□□ -1.08
CBX1-201ENST00000225603 ROMO1P60602 79 aa8.26□□□□□ -1.09
CBX1-201ENST00000225603 KRTAP12-2P59991 146 aa8.26□□□□□ -1.09
CBX1-201ENST00000225603 KRTAP12-1P59990 96 aa8.23□□□□□ -1.09
CBX1-201ENST00000225603 KRTAP10-10P60014 251 aa8.22□□□□□ -1.09
CBX1-201ENST00000225603 KRTAP25-1Q3LHN0 102 aa8.21□□□□□ -1.09
CBX1-201ENST00000225603 LINC01554Q52M75 96 aa8.2□□□□□ -1.1
CBX1-201ENST00000225603 SPINT4Q6UDR6 99 aa8.19□□□□□ -1.1
CBX1-201ENST00000225603 R4GN34 69 aa8.15□□□□□ -1.1
CBX1-201ENST00000225603 CRIPTQ9P021 101 aa8.13□□□□□ -1.11
CBX1-201ENST00000225603 KRTAP19-1Q8IUB9 90 aa8.07□□□□□ -1.12
CBX1-201ENST00000225603 KRTAP9-3Q9BYQ3 159 aa8.06□□□□□ -1.12
CBX1-201ENST00000225603 SPRR2GQ9BYE4 73 aa8.03□□□□□ -1.12
CBX1-201ENST00000225603 C10orf95Q9H7T3 257 aa7.91□□□□□ -1.14
CBX1-201ENST00000225603 LCE2BO14633 110 aa7.88□□□□□ -1.15
CBX1-201ENST00000225603 KRTAP19-8Q3LI54 63 aa7.85□□□□□ -1.15
CBX1-201ENST00000225603 MT1BP07438 61 aa7.8□□□□□ -1.16
CBX1-201ENST00000225603 LOC100996750A0A140TA64 210 aa7.73□□□□□ -1.17
CBX1-201ENST00000225603 KRTAP4-6Q9BYQ5 205 aa7.73□□□□□ -1.17
CBX1-201ENST00000225603 CAMK2N1Q7Z7J9 78 aa7.71□□□□□ -1.18
CBX1-201ENST00000225603 PLAC4Q8WY50 150 aa7.7□□□□□ -1.18
CBX1-201ENST00000225603 USH2AO75445 5202 aa7.7□□□□□ -1.18
CBX1-201ENST00000225603 FSIP2Q5CZC0 6907 aa7.54□□□□□ -1.2
CBX1-201ENST00000225603 KRTAP9-2Q9BYQ4 174 aa7.53□□□□□ -1.2
CBX1-201ENST00000225603 MT1XP80297 61 aa7.51□□□□□ -1.21
CBX1-201ENST00000225603 KRTAP10-5P60370 271 aa7.49□□□□□ -1.21
CBX1-201ENST00000225603 SSPOA2VEC9 5147 aa7.48□□□□□ -1.21
CBX1-201ENST00000225603 PP632Q6XCG6 107 aa7.43□□□□□ -1.22
CBX1-201ENST00000225603 KRTAP15-1Q3LI76 137 aa7.42□□□□□ -1.22
CBX1-201ENST00000225603 TNP1P09430 55 aa7.39□□□□□ -1.23
CBX1-201ENST00000225603 KRTAP19-6Q3LI70 58 aa7.39□□□□□ -1.23
CBX1-201ENST00000225603 H3BS24 57 aa7.35□□□□□ -1.23
CBX1-201ENST00000225603 PRO2289Q9P1D8 64 aa7.35□□□□□ -1.23
CBX1-201ENST00000225603 KRTAP23-1A1A580 65 aa7.28□□□□□ -1.24
CBX1-201ENST00000225603 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
CBX1-201ENST00000225603 KRTAP10-7P60409 375 aaPredicted RBP7.21□□□□□ -1.25
CBX1-201ENST00000225603 FCGBPQ9Y6R7 5405 aaPredicted RBP7.2□□□□□ -1.26
CBX1-201ENST00000225603 KRTAP10-12P60413 245 aa7.09□□□□□ -1.27
CBX1-201ENST00000225603 NDUFAF8A1L188 74 aa7.08□□□□□ -1.28
CBX1-201ENST00000225603 LCE3AQ5TA76 89 aa7.04□□□□□ -1.28
CBX1-201ENST00000225603 KMT2DO14686 5537 aa7.01□□□□□ -1.29
CBX1-201ENST00000225603 KRTAP4-8A0A0G2JLE6 195 aa7□□□□□ -1.29
CBX1-201ENST00000225603 KRTAP4-8Q9BYQ9 185 aa7□□□□□ -1.29
CBX1-201ENST00000225603 KRTAP9-6A0A140TA67 174 aa6.98□□□□□ -1.29
CBX1-201ENST00000225603 KRTAP8-1Q8IUC2 63 aa6.88□□□□□ -1.31
CBX1-201ENST00000225603 MACF1Q9UPN3 7388 aaKnown RBP6.85□□□□□ -1.31
CBX1-201ENST00000225603 SPRR5A0A1B0GTR4 108 aa6.82□□□□□ -1.32
CBX1-201ENST00000225603 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
CBX1-201ENST00000225603 KRTAP19-5Q3LI72 72 aa6.75□□□□□ -1.33
CBX1-201ENST00000225603 KRTAP12-3P60328 96 aa6.72□□□□□ -1.33
CBX1-201ENST00000225603 SYNE2Q8WXH0 6885 aaKnown RBP6.7□□□□□ -1.34
CBX1-201ENST00000225603 KRTAP19-7Q3SYF9 63 aa6.7□□□□□ -1.34
CBX1-201ENST00000225603 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.7□□□□□ -1.34
CBX1-201ENST00000225603 MT1EP04732 61 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms