RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-222ENST00000642141 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-222ENST00000642141 A0A087WSZ3 146 aa5.37□□□□□ -1.55
SCN1A-222ENST00000642141 TRIAP1O43715 76 aa5.37□□□□□ -1.55
SCN1A-222ENST00000642141 Q75L30 129 aa5.37□□□□□ -1.55
SCN1A-222ENST00000642141 CRCT1Q9UGL9 99 aa5.37□□□□□ -1.55
SCN1A-222ENST00000642141 IMUPQ9GZP8 106 aa5.36□□□□□ -1.55
SCN1A-222ENST00000642141 A0A1B0GX51 115 aa5.35□□□□□ -1.55
SCN1A-222ENST00000642141 C21orf62-AS1Q17RA5 79 aa5.35□□□□□ -1.55
SCN1A-222ENST00000642141 SS18L2Q9UHA2 77 aa5.35□□□□□ -1.55
SCN1A-222ENST00000642141 DSCR10P59022 87 aa5.34□□□□□ -1.55
SCN1A-222ENST00000642141 A0A1W2PNM2 257 aa5.33□□□□□ -1.56
SCN1A-222ENST00000642141 H3BQ85 93 aa5.33□□□□□ -1.56
SCN1A-222ENST00000642141 DEFB116Q30KQ4 102 aa5.31□□□□□ -1.56
SCN1A-222ENST00000642141 A8MUU9 505 aa5.3□□□□□ -1.56
SCN1A-222ENST00000642141 DNAL4O96015 105 aa5.3□□□□□ -1.56
SCN1A-222ENST00000642141 C20orf166-AS1Q96NR2 134 aa5.3□□□□□ -1.56
SCN1A-222ENST00000642141 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
SCN1A-222ENST00000642141 GHRHP01286 108 aa5.29□□□□□ -1.56
SCN1A-222ENST00000642141 IGKV4-1P06312 121 aa5.29□□□□□ -1.56
SCN1A-222ENST00000642141 ORMDL1Q9P0S3 153 aa5.29□□□□□ -1.56
SCN1A-222ENST00000642141 BAALC-AS2P0C853 105 aa5.28□□□□□ -1.56
SCN1A-222ENST00000642141 LINC00643Q86TS7 51 aa5.28□□□□□ -1.56
SCN1A-222ENST00000642141 MT-ATP8P03928 68 aa5.27□□□□□ -1.57
SCN1A-222ENST00000642141 NOTCH2NLQ7Z3S9 236 aa5.27□□□□□ -1.57
SCN1A-222ENST00000642141 KRTAP16-1A8MUX0 517 aa5.26□□□□□ -1.57
SCN1A-222ENST00000642141 LINC00313P59037 77 aa5.26□□□□□ -1.57
SCN1A-222ENST00000642141 TRBV7-4A0A0J9YYF1 115 aa5.25□□□□□ -1.57
SCN1A-222ENST00000642141 JMJD7-PLA2G4BH0Y9G9 81 aa5.25□□□□□ -1.57
SCN1A-222ENST00000642141 TMEM256-PLSCR3K7ERE1 68 aa5.25□□□□□ -1.57
SCN1A-222ENST00000642141 CCKP06307 115 aa5.25□□□□□ -1.57
SCN1A-222ENST00000642141 ANAPC13Q9BS18 74 aa5.25□□□□□ -1.57
SCN1A-222ENST00000642141 IGHV6-1A0A0B4J1U7 121 aa5.24□□□□□ -1.57
SCN1A-222ENST00000642141 PDE6GP18545 87 aa5.22□□□□□ -1.57
SCN1A-222ENST00000642141 LINC00472Q9H8W2 130 aa5.22□□□□□ -1.57
SCN1A-222ENST00000642141 FAM236DA0A1B0GTK5 79 aa5.2□□□□□ -1.58
SCN1A-222ENST00000642141 FAM236CP0DP71 79 aa5.2□□□□□ -1.58
SCN1A-222ENST00000642141 ATP5EP2Q5VTU8 51 aa5.2□□□□□ -1.58
SCN1A-222ENST00000642141 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-222ENST00000642141 RBM3P98179 157 aaKnown RBP5.19□□□□□ -1.58
SCN1A-222ENST00000642141 DSCR8Q96T75 97 aa5.18□□□□□ -1.58
SCN1A-222ENST00000642141 KRTAP9-8Q9BYQ0 159 aa5.18□□□□□ -1.58
SCN1A-222ENST00000642141 A0A1B0GVX0 72 aa5.16□□□□□ -1.58
SCN1A-222ENST00000642141 ATOX1O00244 68 aa5.16□□□□□ -1.58
SCN1A-222ENST00000642141 HRES1P13985 223 aa5.15□□□□□ -1.59
SCN1A-222ENST00000642141 UQCRQO14949 82 aa5.14□□□□□ -1.59
SCN1A-222ENST00000642141 RBM12B-AS1Q9P1G2 102 aa5.14□□□□□ -1.59
SCN1A-222ENST00000642141 USH2AO75445 5202 aa5.14□□□□□ -1.59
SCN1A-222ENST00000642141 LOC110117498A0A087WWA1 95 aa5.13□□□□□ -1.59
SCN1A-222ENST00000642141 A0A1B0GW54 56 aa5.13□□□□□ -1.59
SCN1A-222ENST00000642141 HIST1H4AP62805 103 aaKnown RBP5.13□□□□□ -1.59
SCN1A-222ENST00000642141 C8orf87E5RJ46 101 aa5.12□□□□□ -1.59
SCN1A-222ENST00000642141 Q6ZQT0 140 aa5.12□□□□□ -1.59
SCN1A-222ENST00000642141 MPLKIPQ8TAP9 179 aa5.12□□□□□ -1.59
SCN1A-222ENST00000642141 MT2AP02795 61 aa5.11□□□□□ -1.59
SCN1A-222ENST00000642141 UBL5Q9BZL1 73 aa5.11□□□□□ -1.59
SCN1A-222ENST00000642141 FAM236AA0A1B0GUQ0 79 aa5.1□□□□□ -1.59
SCN1A-222ENST00000642141 FAM236BA0A1B0GV22 79 aa5.1□□□□□ -1.59
SCN1A-222ENST00000642141 J3KT08 172 aa5.1□□□□□ -1.59
SCN1A-222ENST00000642141 SMIM20Q8N5G0 67 aa5.1□□□□□ -1.59
SCN1A-222ENST00000642141 ZCCHC13Q8WW36 166 aaKnown RBP5.1□□□□□ -1.59
SCN1A-222ENST00000642141 COX7CP15954 63 aa5.09□□□□□ -1.59
SCN1A-222ENST00000642141 SPINK7P58062 85 aa5.09□□□□□ -1.59
SCN1A-222ENST00000642141 C14orf132Q9NPU4 83 aa5.09□□□□□ -1.59
SCN1A-222ENST00000642141 NDUFB1O75438 58 aa5.08□□□□□ -1.6
SCN1A-222ENST00000642141 MT1FP04733 61 aa5.08□□□□□ -1.6
SCN1A-222ENST00000642141 KRTAP10-10P60014 251 aa5.08□□□□□ -1.6
SCN1A-222ENST00000642141 LCE3BQ5TA77 95 aa5.08□□□□□ -1.6
SCN1A-222ENST00000642141 CXCL6P80162 114 aa5.07□□□□□ -1.6
SCN1A-222ENST00000642141 SERP2Q8N6R1 65 aa5.07□□□□□ -1.6
SCN1A-222ENST00000642141 LINC00846Q9NV44 126 aa5.07□□□□□ -1.6
SCN1A-222ENST00000642141 SSPOA2VEC9 5147 aa5.07□□□□□ -1.6
SCN1A-222ENST00000642141 IGKV3D-7A0A0C4DH55 119 aa5.06□□□□□ -1.6
SCN1A-222ENST00000642141 C8orf17Q9NRJ1 99 aa5.06□□□□□ -1.6
SCN1A-222ENST00000642141 A8MWP4 228 aa5.05□□□□□ -1.6
SCN1A-222ENST00000642141 CCDC179H3BU77 68 aa5.05□□□□□ -1.6
SCN1A-222ENST00000642141 RPS28P62857 69 aaKnown RBP5.05□□□□□ -1.6
SCN1A-222ENST00000642141 KRTAP4-12Q9BQ66 201 aa5.05□□□□□ -1.6
SCN1A-222ENST00000642141 Q8N9P0 234 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-222ENST00000642141 WFDC13Q8IUB5 93 aa5.03□□□□□ -1.6
SCN1A-222ENST00000642141 NREPQ16612 68 aa5.02□□□□□ -1.61
SCN1A-222ENST00000642141 Q6ZVQ6 151 aa5.02□□□□□ -1.61
SCN1A-222ENST00000642141 KRTAP9-3Q9BYQ3 159 aa5.02□□□□□ -1.61
SCN1A-222ENST00000642141 TMEM258P61165 79 aa5.01□□□□□ -1.61
SCN1A-222ENST00000642141 PRR15Q8IV56 129 aa5□□□□□ -1.61
SCN1A-222ENST00000642141 FCGBPQ9Y6R7 5405 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-222ENST00000642141 TRAV7A0A075B6U4 112 aa4.99□□□□□ -1.61
SCN1A-222ENST00000642141 NDUFC1O43677 76 aa4.98□□□□□ -1.61
SCN1A-222ENST00000642141 NDUFS5O43920 106 aa4.98□□□□□ -1.61
SCN1A-222ENST00000642141 KRTAP19-1Q8IUB9 90 aa4.98□□□□□ -1.61
SCN1A-222ENST00000642141 MMP24-AS1A0A0U1RRL7 71 aa4.97□□□□□ -1.61
SCN1A-222ENST00000642141 KRTAP9-7A8MTY7 169 aa4.96□□□□□ -1.62
SCN1A-222ENST00000642141 K7EQZ3 153 aa4.96□□□□□ -1.62
SCN1A-222ENST00000642141 SVIPQ8NHG7 77 aa4.96□□□□□ -1.62
SCN1A-222ENST00000642141 MRPL34Q9BQ48 92 aaKnown RBP4.96□□□□□ -1.62
SCN1A-222ENST00000642141 TMEM254Q8TBM7 123 aa4.95□□□□□ -1.62
SCN1A-222ENST00000642141 hDV103S1A0JD37 113 aa4.94□□□□□ -1.62
SCN1A-222ENST00000642141 ATP5EP56381 51 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-222ENST00000642141 KRTAP9-9Q9BYP9 154 aa4.94□□□□□ -1.62
SCN1A-222ENST00000642141 KRTAP9-4Q9BYQ2 154 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms