RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LIMD2Q9BT23 127 aa11.42□□□□□ -0.58
CLN3-250ENST00000636839 A8MWP4 228 aa11.4□□□□□ -0.58
CLN3-250ENST00000636839 FAM236AA0A1B0GUQ0 79 aa11.4□□□□□ -0.59
CLN3-250ENST00000636839 FAM236BA0A1B0GV22 79 aa11.4□□□□□ -0.59
CLN3-250ENST00000636839 DMBT1Q9UGM3 2413 aaPredicted RBP11.38□□□□□ -0.59
CLN3-250ENST00000636839 J3KT08 172 aa11.38□□□□□ -0.59
CLN3-250ENST00000636839 PRR15Q8IV56 129 aa11.37□□□□□ -0.59
CLN3-250ENST00000636839 RPS29P62273 56 aaKnown RBP11.36□□□□□ -0.59
CLN3-250ENST00000636839 RETNLBQ9BQ08 111 aa11.36□□□□□ -0.59
CLN3-250ENST00000636839 RPS28P62857 69 aaKnown RBP11.35□□□□□ -0.59
CLN3-250ENST00000636839 NOTCH2NLQ7Z3S9 236 aa11.35□□□□□ -0.59
CLN3-250ENST00000636839 IGHV6-1A0A0B4J1U7 121 aa11.34□□□□□ -0.59
CLN3-250ENST00000636839 COX7CP15954 63 aa11.33□□□□□ -0.6
CLN3-250ENST00000636839 ATOX1O00244 68 aa11.32□□□□□ -0.6
CLN3-250ENST00000636839 A0A1B0GVX0 72 aa11.31□□□□□ -0.6
CLN3-250ENST00000636839 NDUFB1O75438 58 aa11.31□□□□□ -0.6
CLN3-250ENST00000636839 C5orf47Q569G3 176 aa11.31□□□□□ -0.6
CLN3-250ENST00000636839 OXTP01178 125 aa11.3□□□□□ -0.6
CLN3-250ENST00000636839 WFDC13Q8IUB5 93 aa11.29□□□□□ -0.6
CLN3-250ENST00000636839 HCG22E2RYF7 251 aa11.26□□□□□ -0.61
CLN3-250ENST00000636839 MMP24-AS1A0A0U1RRL7 71 aa11.26□□□□□ -0.61
CLN3-250ENST00000636839 KRTAP29-1A8MX34 341 aaPredicted RBP11.25□□□□□ -0.61
CLN3-250ENST00000636839 C8orf17Q9NRJ1 99 aa11.25□□□□□ -0.61
CLN3-250ENST00000636839 TMEM258P61165 79 aa11.21□□□□□ -0.61
CLN3-250ENST00000636839 CASC2Q6XLA1 102 aa11.21□□□□□ -0.62
CLN3-250ENST00000636839 PCLOQ9Y6V0 5065 aa11.2□□□□□ -0.62
CLN3-250ENST00000636839 hDV103S1A0JD37 113 aa11.18□□□□□ -0.62
CLN3-250ENST00000636839 SERP2Q8N6R1 65 aa11.17□□□□□ -0.62
CLN3-250ENST00000636839 LINC00313P59037 77 aa11.16□□□□□ -0.62
CLN3-250ENST00000636839 C9orf92A6NGG3 77 aa11.13□□□□□ -0.63
CLN3-250ENST00000636839 J3QL48 77 aa11.13□□□□□ -0.63
CLN3-250ENST00000636839 C8orf87E5RJ46 101 aa11.11□□□□□ -0.63
CLN3-250ENST00000636839 KRTAP16-1A8MUX0 517 aa11.09□□□□□ -0.63
CLN3-250ENST00000636839 OCR1Q9BZK8 76 aa11.09□□□□□ -0.63
CLN3-250ENST00000636839 MRPL34Q9BQ48 92 aaKnown RBP11.08□□□□□ -0.64
CLN3-250ENST00000636839 TMEM254Q8TBM7 123 aa11.07□□□□□ -0.64
CLN3-250ENST00000636839 NDUFS5O43920 106 aa11.04□□□□□ -0.64
CLN3-250ENST00000636839 IGLV7-46A0A075B6I9 117 aa11.04□□□□□ -0.64
CLN3-250ENST00000636839 PRR4Q16378 134 aa11.03□□□□□ -0.64
CLN3-250ENST00000636839 TRAV7A0A075B6U4 112 aa11.01□□□□□ -0.65
CLN3-250ENST00000636839 FP248Q71RG6 208 aaPredicted RBP11.01□□□□□ -0.65
CLN3-250ENST00000636839 Q8N9P0 234 aaPredicted RBP10.97□□□□□ -0.65
CLN3-250ENST00000636839 KRTAP13-3Q3SY46 172 aa10.94□□□□□ -0.66
CLN3-250ENST00000636839 CYSTM1Q9H1C7 97 aa10.94□□□□□ -0.66
CLN3-250ENST00000636839 Q5W150 140 aa10.93□□□□□ -0.66
CLN3-250ENST00000636839 LPAP08519 4548 aa10.91□□□□□ -0.66
CLN3-250ENST00000636839 HERC1Q15751 4861 aa10.89□□□□□ -0.67
CLN3-250ENST00000636839 C20orf197Q8N268 126 aa10.89□□□□□ -0.67
CLN3-250ENST00000636839 TP53AIP1Q9HCN2 124 aa10.88□□□□□ -0.67
CLN3-250ENST00000636839 SERP1Q9Y6X1 66 aa10.87□□□□□ -0.67
CLN3-250ENST00000636839 C20orf166-AS1Q96NR2 134 aa10.87□□□□□ -0.67
CLN3-250ENST00000636839 SNURFQ9Y675 71 aa10.87□□□□□ -0.67
CLN3-250ENST00000636839 FAM236DA0A1B0GTK5 79 aa10.86□□□□□ -0.67
CLN3-250ENST00000636839 FAM236CP0DP71 79 aa10.86□□□□□ -0.67
CLN3-250ENST00000636839 A8MUU9 505 aa10.85□□□□□ -0.67
CLN3-250ENST00000636839 H0Y9P7 68 aa10.85□□□□□ -0.67
CLN3-250ENST00000636839 XP32Q5T750 250 aa10.85□□□□□ -0.67
CLN3-250ENST00000636839 TRAV22A0A0B4J277 110 aa10.84□□□□□ -0.67
CLN3-250ENST00000636839 C4orf26Q17RF5 130 aa10.84□□□□□ -0.67
CLN3-250ENST00000636839 LINC00208Q96KT6 92 aa10.8□□□□□ -0.68
CLN3-250ENST00000636839 A0A0U1RQV1 116 aa10.8□□□□□ -0.68
CLN3-250ENST00000636839 KLKP1Q107X0 134 aa10.8□□□□□ -0.68
CLN3-250ENST00000636839 TPRXLQ17RH7 258 aa10.8□□□□□ -0.68
CLN3-250ENST00000636839 NDUFC1O43677 76 aa10.79□□□□□ -0.68
CLN3-250ENST00000636839 ATP5EP56381 51 aaPredicted RBP10.79□□□□□ -0.68
CLN3-250ENST00000636839 LRP2P98164 4655 aa10.78□□□□□ -0.68
CLN3-250ENST00000636839 MP68P56378 58 aa10.77□□□□□ -0.68
CLN3-250ENST00000636839 Q75L30 129 aa10.77□□□□□ -0.68
CLN3-250ENST00000636839 H7BZZ5 65 aa10.76□□□□□ -0.69
CLN3-250ENST00000636839 PRO0628Q9UI54 55 aa10.76□□□□□ -0.69
CLN3-250ENST00000636839 C1orf64Q8NEQ6 169 aa10.75□□□□□ -0.69
CLN3-250ENST00000636839 ZCCHC13Q8WW36 166 aaKnown RBP10.75□□□□□ -0.69
CLN3-250ENST00000636839 SMIM26A0A096LP01 95 aa10.75□□□□□ -0.69
CLN3-250ENST00000636839 RPL37P61927 97 aaKnown RBP10.72□□□□□ -0.69
CLN3-250ENST00000636839 HMCN2Q8NDA2 5059 aa10.66□□□□□ -0.7
CLN3-250ENST00000636839 IGKV2D-30A0A075B6S6 120 aa10.65□□□□□ -0.71
CLN3-250ENST00000636839 H3BPC8 53 aa10.65□□□□□ -0.71
CLN3-250ENST00000636839 IGKV2-30P06310 120 aa10.65□□□□□ -0.71
CLN3-250ENST00000636839 ATP11AUNQ6ZP68 121 aa10.65□□□□□ -0.71
CLN3-250ENST00000636839 PCOTHQ58A44 107 aa10.63□□□□□ -0.71
CLN3-250ENST00000636839 CYP4F30PQ9H0H9 118 aa10.63□□□□□ -0.71
CLN3-250ENST00000636839 LOC101927531A0A1B0GV80 90 aa10.6□□□□□ -0.71
CLN3-250ENST00000636839 SPINK7P58062 85 aa10.54□□□□□ -0.72
CLN3-250ENST00000636839 C7orf65Q6ZTY9 151 aa10.51□□□□□ -0.73
CLN3-250ENST00000636839 HRES1P13985 223 aa10.48□□□□□ -0.73
CLN3-250ENST00000636839 SEC61BP60468 96 aaKnown RBP10.41□□□□□ -0.74
CLN3-250ENST00000636839 KRTAP4-1Q9BYQ7 146 aa10.4□□□□□ -0.75
CLN3-250ENST00000636839 BRK1Q8WUW1 75 aa10.39□□□□□ -0.75
CLN3-250ENST00000636839 SPANXA2-OT1Q8N9U9 137 aa10.35□□□□□ -0.75
CLN3-250ENST00000636839 V9GYY9 64 aa10.34□□□□□ -0.75
CLN3-250ENST00000636839 MUC2Q02817 5179 aa10.34□□□□□ -0.75
CLN3-250ENST00000636839 MUC17Q685J3 4493 aa10.34□□□□□ -0.75
CLN3-250ENST00000636839 UBR4Q5T4S7 5183 aa10.3□□□□□ -0.76
CLN3-250ENST00000636839 MPLKIPQ8TAP9 179 aa10.29□□□□□ -0.76
CLN3-250ENST00000636839 KRTAP3-1Q9BYR8 98 aa10.29□□□□□ -0.76
CLN3-250ENST00000636839 Q1T7F1 81 aa10.28□□□□□ -0.76
CLN3-250ENST00000636839 DMAC1Q96GE9 116 aa10.23□□□□□ -0.77
CLN3-250ENST00000636839 SEC61GP60059 68 aa10.21□□□□□ -0.78
CLN3-250ENST00000636839 COX6B2Q6YFQ2 88 aa10.2□□□□□ -0.78
CLN3-250ENST00000636839 RNF213Q63HN8 5207 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms