RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FAM229BQ4G0N7 80 aa8.39□□□□□ -1.07
VRK3-217ENST00000599538 FAT1Q14517 4588 aa8.37□□□□□ -1.07
VRK3-217ENST00000599538 CDK2AP2O75956 126 aa8.36□□□□□ -1.07
VRK3-217ENST00000599538 PLA2G1BP04054 148 aaKnown RBP8.36□□□□□ -1.07
VRK3-217ENST00000599538 APOBP04114 4563 aaKnown RBP8.36□□□□□ -1.07
VRK3-217ENST00000599538 LINC00208Q96KT6 92 aa8.35□□□□□ -1.07
VRK3-217ENST00000599538 H0Y9P7 68 aa8.34□□□□□ -1.07
VRK3-217ENST00000599538 MP68P56378 58 aa8.32□□□□□ -1.08
VRK3-217ENST00000599538 C1orf195Q5TG92 126 aa8.31□□□□□ -1.08
VRK3-217ENST00000599538 MRPL34Q9BQ48 92 aaKnown RBP8.3□□□□□ -1.08
VRK3-217ENST00000599538 NDUFS5O43920 106 aa8.29□□□□□ -1.08
VRK3-217ENST00000599538 KRTAP10-4P60372 401 aaPredicted RBP8.29□□□□□ -1.08
VRK3-217ENST00000599538 PRR26Q8N8Z3 221 aa8.29□□□□□ -1.08
VRK3-217ENST00000599538 TYMSOSQ8TAI1 123 aa8.29□□□□□ -1.08
VRK3-217ENST00000599538 TRAV22A0A0B4J277 110 aa8.29□□□□□ -1.08
VRK3-217ENST00000599538 SERP1Q9Y6X1 66 aa8.29□□□□□ -1.08
VRK3-217ENST00000599538 Q5XG85 94 aa8.27□□□□□ -1.08
VRK3-217ENST00000599538 PRR4Q16378 134 aa8.26□□□□□ -1.09
VRK3-217ENST00000599538 C1orf64Q8NEQ6 169 aa8.26□□□□□ -1.09
VRK3-217ENST00000599538 ATP5EP56381 51 aaPredicted RBP8.26□□□□□ -1.09
VRK3-217ENST00000599538 TP53AIP1Q9HCN2 124 aa8.24□□□□□ -1.09
VRK3-217ENST00000599538 H3BPC8 53 aa8.23□□□□□ -1.09
VRK3-217ENST00000599538 RYR3Q15413 4870 aa8.22□□□□□ -1.09
VRK3-217ENST00000599538 C4orf48Q5BLP8 95 aa8.21□□□□□ -1.09
VRK3-217ENST00000599538 Q5W150 140 aa8.21□□□□□ -1.1
VRK3-217ENST00000599538 LIMD2Q9BT23 127 aa8.21□□□□□ -1.1
VRK3-217ENST00000599538 LINC00313P59037 77 aa8.2□□□□□ -1.1
VRK3-217ENST00000599538 C8orf87E5RJ46 101 aa8.19□□□□□ -1.1
VRK3-217ENST00000599538 SPINK1P00995 79 aa8.19□□□□□ -1.1
VRK3-217ENST00000599538 C4orf26Q17RF5 130 aa8.18□□□□□ -1.1
VRK3-217ENST00000599538 LINC00304Q8N9R0 145 aa8.18□□□□□ -1.1
VRK3-217ENST00000599538 PCOTHQ58A44 107 aa8.17□□□□□ -1.1
VRK3-217ENST00000599538 KRTAP13-3Q3SY46 172 aa8.16□□□□□ -1.1
VRK3-217ENST00000599538 KRTAP16-1A8MUX0 517 aa8.15□□□□□ -1.1
VRK3-217ENST00000599538 FP248Q71RG6 208 aaPredicted RBP8.15□□□□□ -1.1
VRK3-217ENST00000599538 CYP4F30PQ9H0H9 118 aa8.15□□□□□ -1.11
VRK3-217ENST00000599538 Q8N9P0 234 aaPredicted RBP8.13□□□□□ -1.11
VRK3-217ENST00000599538 PKHD1L1Q86WI1 4243 aa8.12□□□□□ -1.11
VRK3-217ENST00000599538 SMIM26A0A096LP01 95 aa8.12□□□□□ -1.11
VRK3-217ENST00000599538 RETNLBQ9BQ08 111 aa8.12□□□□□ -1.11
VRK3-217ENST00000599538 SPANXA2-OT1Q8N9U9 137 aa8.11□□□□□ -1.11
VRK3-217ENST00000599538 HSPG2P98160 4391 aa8.1□□□□□ -1.11
VRK3-217ENST00000599538 SPAG11AQ6PDA7 123 aa8.08□□□□□ -1.12
VRK3-217ENST00000599538 RPS29P62273 56 aaKnown RBP8.08□□□□□ -1.12
VRK3-217ENST00000599538 KRTAP17-1Q9BYP8 105 aa8.08□□□□□ -1.12
VRK3-217ENST00000599538 LRP1Q07954 4544 aaKnown RBP8.07□□□□□ -1.12
VRK3-217ENST00000599538 IGLV7-46A0A075B6I9 117 aa8.07□□□□□ -1.12
VRK3-217ENST00000599538 MPLKIPQ8TAP9 179 aa8.05□□□□□ -1.12
VRK3-217ENST00000599538 LOC101927531A0A1B0GV80 90 aa8.04□□□□□ -1.12
VRK3-217ENST00000599538 FAM229AH3BQW9 127 aa8.03□□□□□ -1.12
VRK3-217ENST00000599538 Q5VSD8 79 aa8.02□□□□□ -1.13
VRK3-217ENST00000599538 FLG2Q5D862 2391 aaPredicted RBP8.02□□□□□ -1.13
VRK3-217ENST00000599538 RYR1P21817 5038 aa8.02□□□□□ -1.13
VRK3-217ENST00000599538 KIAA1109Q2LD37 5005 aa8□□□□□ -1.13
VRK3-217ENST00000599538 Q8N1X5 172 aa7.98□□□□□ -1.13
VRK3-217ENST00000599538 C9orf92A6NGG3 77 aa7.97□□□□□ -1.13
VRK3-217ENST00000599538 TNXBP22105 4242 aa7.97□□□□□ -1.13
VRK3-217ENST00000599538 IGKV2-30P06310 120 aa7.97□□□□□ -1.13
VRK3-217ENST00000599538 COA5Q86WW8 74 aa7.96□□□□□ -1.13
VRK3-217ENST00000599538 HRES1P13985 223 aa7.94□□□□□ -1.14
VRK3-217ENST00000599538 EPPK1P58107 5090 aaKnown RBP7.93□□□□□ -1.14
VRK3-217ENST00000599538 KRTAP10-8P60410 259 aa7.93□□□□□ -1.14
VRK3-217ENST00000599538 IGKV2D-30A0A075B6S6 120 aa7.92□□□□□ -1.14
VRK3-217ENST00000599538 DMBT1Q9UGM3 2413 aaPredicted RBP7.9□□□□□ -1.14
VRK3-217ENST00000599538 Q1T7F1 81 aa7.9□□□□□ -1.15
VRK3-217ENST00000599538 FAT3Q8TDW7 4589 aa7.89□□□□□ -1.15
VRK3-217ENST00000599538 MYCBP2O75592 4640 aa7.88□□□□□ -1.15
VRK3-217ENST00000599538 PRO0628Q9UI54 55 aa7.87□□□□□ -1.15
VRK3-217ENST00000599538 C20orf166-AS1Q96NR2 134 aa7.85□□□□□ -1.15
VRK3-217ENST00000599538 A8MUU9 505 aa7.85□□□□□ -1.15
VRK3-217ENST00000599538 PSPHP1O15172 72 aa7.85□□□□□ -1.15
VRK3-217ENST00000599538 DMAC1Q96GE9 116 aa7.83□□□□□ -1.16
VRK3-217ENST00000599538 A8MUN3 132 aa7.81□□□□□ -1.16
VRK3-217ENST00000599538 MT1HL1P0DM35 61 aa7.79□□□□□ -1.16
VRK3-217ENST00000599538 ACYP2P14621 99 aa7.79□□□□□ -1.16
VRK3-217ENST00000599538 C7orf65Q6ZTY9 151 aa7.78□□□□□ -1.16
VRK3-217ENST00000599538 BRK1Q8WUW1 75 aa7.78□□□□□ -1.16
VRK3-217ENST00000599538 V9GYY9 64 aa7.75□□□□□ -1.17
VRK3-217ENST00000599538 Q5VV11 94 aa7.74□□□□□ -1.17
VRK3-217ENST00000599538 PRR15LQ9BU68 103 aa7.73□□□□□ -1.17
VRK3-217ENST00000599538 KRTAP4-5Q9BYR2 181 aa7.73□□□□□ -1.17
VRK3-217ENST00000599538 Q75L30 129 aa7.72□□□□□ -1.17
VRK3-217ENST00000599538 CHKB-CPT1BH3BT56 60 aa7.69□□□□□ -1.18
VRK3-217ENST00000599538 LINC01558Q9Y6Z2 57 aa7.69□□□□□ -1.18
VRK3-217ENST00000599538 SPINK7P58062 85 aa7.69□□□□□ -1.18
VRK3-217ENST00000599538 XP32Q5T750 250 aa7.64□□□□□ -1.19
VRK3-217ENST00000599538 KRTAP3-1Q9BYR8 98 aa7.64□□□□□ -1.19
VRK3-217ENST00000599538 A8MU10 97 aa7.63□□□□□ -1.19
VRK3-217ENST00000599538 RPL37P61927 97 aaKnown RBP7.6□□□□□ -1.19
VRK3-217ENST00000599538 ATP11AUNQ6ZP68 121 aa7.6□□□□□ -1.19
VRK3-217ENST00000599538 ABCA13Q86UQ4 5058 aa7.58□□□□□ -1.2
VRK3-217ENST00000599538 A6NED7 52 aa7.53□□□□□ -1.2
VRK3-217ENST00000599538 LRP2P98164 4655 aa7.53□□□□□ -1.2
VRK3-217ENST00000599538 LPAP08519 4548 aa7.52□□□□□ -1.21
VRK3-217ENST00000599538 LCA10Q71F78 164 aa7.52□□□□□ -1.21
VRK3-217ENST00000599538 COX6B2Q6YFQ2 88 aa7.49□□□□□ -1.21
VRK3-217ENST00000599538 A0A1B0GU69 56 aa7.49□□□□□ -1.21
VRK3-217ENST00000599538 TPRXLQ17RH7 258 aa7.45□□□□□ -1.22
VRK3-217ENST00000599538 HERC2O95714 4834 aa7.44□□□□□ -1.22
VRK3-217ENST00000599538 CDC42SE1Q9NRR8 79 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms