RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 C20orf78Q9BR46 151 aa-0.51□□□□□ -2.49
SMCHD1-207ENST00000581711 SCN11AQ9UI33 1791 aa-0.51□□□□□ -2.49
SMCHD1-207ENST00000581711 VPS8Q8N3P4 1428 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 ANKRD50Q9ULJ7 1429 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 TRAV21A0A0B4J279 112 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 C3orf79P0CE67 100 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 SNHG12Q9BXW3 62 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 PRO3102Q9H379 93 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 DOT1LQ8TEK3 1739 aa-0.52□□□□□ -2.49
SMCHD1-207ENST00000581711 NWD1Q149M9 1564 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 CEP162Q5TB80 1403 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 MYMXA0A1B0GTQ4 84 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 S100A8P05109 93 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 LINC00158P58513 81 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 PKIAP61925 76 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 USP32Q8NFA0 1604 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 PLXNC1O60486 1568 aa-0.53□□□□□ -2.49
SMCHD1-207ENST00000581711 TJP1Q07157 1748 aa-0.54□□□□□ -2.5
SMCHD1-207ENST00000581711 MT1HP80294 61 aa-0.54□□□□□ -2.5
SMCHD1-207ENST00000581711 PYY3Q5JQD4 70 aa-0.54□□□□□ -2.5
SMCHD1-207ENST00000581711 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.54□□□□□ -2.5
SMCHD1-207ENST00000581711 WIZO95785 1651 aa-0.55□□□□□ -2.5
SMCHD1-207ENST00000581711 TMEM131LA2VDJ0 1609 aa-0.55□□□□□ -2.5
SMCHD1-207ENST00000581711 NDUFB1O75438 58 aa-0.55□□□□□ -2.5
SMCHD1-207ENST00000581711 PLIN4Q96Q06 1357 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 DEPDC5O75140 1603 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 CEBPZOSA8MTT3 80 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 MT1BP07438 61 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 SNRPFP62306 86 aaKnown RBP-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 Q9H521 79 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 PPLO60437 1756 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 ARFGEF2Q9Y6D5 1785 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 DDX60LQ5H9U9 1706 aaKnown RBP-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 ZNF831Q5JPB2 1677 aa-0.56□□□□□ -2.5
SMCHD1-207ENST00000581711 MAP3K1Q13233 1512 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 URB2Q14146 1524 aaKnown RBP-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 ASXL1Q8IXJ9 1541 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 ACYP1P07311 99 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 LINC00643Q86TS7 51 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 S100A16Q96FQ6 103 aaKnown RBP-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 RABAC1Q9UI14 185 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 NCOA2Q15596 1464 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 CCNB3Q8WWL7 1395 aa-0.57□□□□□ -2.5
SMCHD1-207ENST00000581711 MAGI3Q5TCQ9 1506 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 H0YAA0 97 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 K7EP34 96 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 IFI27P40305 119 aaPredicted RBP-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 PRLHP81277 87 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 V9GYS6 101 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 DIP2BQ9P265 1576 aa-0.58□□□□□ -2.5
SMCHD1-207ENST00000581711 ABCC3O15438 1527 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 PIK3C2BO00750 1634 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 KIF14Q15058 1648 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 MAP3K4Q9Y6R4 1608 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 PVALEFA0A1B0GWK0 134 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 UMAD1C9J7I0 102 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 LYNX1G3V0Z9 82 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 IFI6P09912 130 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 DEFA5Q01523 94 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 S4R3F8 94 aa-0.59□□□□□ -2.5
SMCHD1-207ENST00000581711 DEFB130BP0DP73 79 aa-0.6□□□□□ -2.51
SMCHD1-207ENST00000581711 DEFB130AP0DP74 79 aa-0.6□□□□□ -2.51
SMCHD1-207ENST00000581711 PLCH1Q4KWH8 1693 aa-0.6□□□□□ -2.51
SMCHD1-207ENST00000581711 CCDC88BA6NC98 1476 aa-0.61□□□□□ -2.51
SMCHD1-207ENST00000581711 IAPPP10997 89 aa-0.61□□□□□ -2.51
SMCHD1-207ENST00000581711 ITSN1Q15811 1721 aa-0.61□□□□□ -2.51
SMCHD1-207ENST00000581711 TTC37Q6PGP7 1564 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 ANKRD36CQ5JPF3 1778 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 KANTRA0A1W2PQU2 76 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 NDUFA4O00483 81 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 DEFB110Q30KQ9 67 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 CFAP43Q8NDM7 1665 aa-0.62□□□□□ -2.51
SMCHD1-207ENST00000581711 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.63□□□□□ -2.51
SMCHD1-207ENST00000581711 RICTORQ6R327 1708 aa-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 THOC2Q8NI27 1593 aaKnown RBP-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 HMGA1P17096 107 aaKnown RBP-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 NREPQ16612 68 aa-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 ATP5EP2Q5VTU8 51 aa-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 DEFB106AQ8N104 65 aa-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 KIAA0586Q9BVV6 1533 aa-0.64□□□□□ -2.51
SMCHD1-207ENST00000581711 DEFB131BA0A096LNP1 70 aa-0.65□□□□□ -2.51
SMCHD1-207ENST00000581711 TDRG1Q3Y452 100 aa-0.65□□□□□ -2.51
SMCHD1-207ENST00000581711 UACAQ9BZF9 1416 aa-0.65□□□□□ -2.51
SMCHD1-207ENST00000581711 ZC3H13Q5T200 1668 aaKnown RBP-0.65□□□□□ -2.51
SMCHD1-207ENST00000581711 A0A087WXM4 84 aa-0.66□□□□□ -2.52
SMCHD1-207ENST00000581711 MRPL33O75394 65 aaKnown RBP-0.66□□□□□ -2.52
SMCHD1-207ENST00000581711 PARP4Q9UKK3 1724 aaKnown RBP-0.67□□□□□ -2.52
SMCHD1-207ENST00000581711 SMIM13P0DJ93 91 aa-0.67□□□□□ -2.52
SMCHD1-207ENST00000581711 MT1HL1P0DM35 61 aa-0.67□□□□□ -2.52
SMCHD1-207ENST00000581711 MT1FP04733 61 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 DEFB1P60022 68 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 ADIRFQ15847 76 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 DEFB121Q5J5C9 76 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 ST20Q9HBF5 79 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 TOGARAM1Q9Y4F4 1720 aa-0.68□□□□□ -2.52
SMCHD1-207ENST00000581711 ITSN2Q9NZM3 1697 aa-0.69□□□□□ -2.52
SMCHD1-207ENST00000581711 KDM5DQ9BY66 1539 aa-0.69□□□□□ -2.52
SMCHD1-207ENST00000581711 NRAPQ86VF7 1730 aa-0.69□□□□□ -2.52
SMCHD1-207ENST00000581711 HFM1A2PYH4 1435 aa-0.69□□□□□ -2.52
SMCHD1-207ENST00000581711 KRTAP19-5Q3LI72 72 aa-0.69□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms