RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 CHD7Q9P2D1 2997 aa1.09□□□□□ -2.24
TOPBP1-210ENST00000572787 MAP1BP46821 2468 aaKnown RBP1.09□□□□□ -2.24
TOPBP1-210ENST00000572787 ZNF469Q96JG9 3925 aaPredicted RBP1.08□□□□□ -2.24
TOPBP1-210ENST00000572787 HIVEP3Q5T1R4 2406 aa1.08□□□□□ -2.24
TOPBP1-210ENST00000572787 FBN3Q75N90 2809 aa1.07□□□□□ -2.24
TOPBP1-210ENST00000572787 NBASA2RRP1 2371 aa1.07□□□□□ -2.24
TOPBP1-210ENST00000572787 PTPN13Q12923 2485 aa1.07□□□□□ -2.24
TOPBP1-210ENST00000572787 NOTCH1P46531 2555 aa1.06□□□□□ -2.24
TOPBP1-210ENST00000572787 SETD2Q9BYW2 2564 aaPredicted RBP1.06□□□□□ -2.24
TOPBP1-210ENST00000572787 DMBT1Q9UGM3 2413 aaPredicted RBP1.06□□□□□ -2.24
TOPBP1-210ENST00000572787 BSNQ9UPA5 3926 aa1.05□□□□□ -2.24
TOPBP1-210ENST00000572787 PDZD2O15018 2839 aa1.04□□□□□ -2.24
TOPBP1-210ENST00000572787 UNC79Q9P2D8 2635 aa1.03□□□□□ -2.24
TOPBP1-210ENST00000572787 TENM2Q9NT68 2774 aa1.03□□□□□ -2.24
TOPBP1-210ENST00000572787 CRCT1Q9UGL9 99 aa1.03□□□□□ -2.24
TOPBP1-210ENST00000572787 PKD1L1Q8TDX9 2849 aa1.02□□□□□ -2.25
TOPBP1-210ENST00000572787 H3BUX3 64 aa1.02□□□□□ -2.25
TOPBP1-210ENST00000572787 ACANP16112 2415 aa1.02□□□□□ -2.25
TOPBP1-210ENST00000572787 SPRR2DP22532 72 aa1.02□□□□□ -2.25
TOPBP1-210ENST00000572787 NF1P21359 2839 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 DEFB108AA8MXU0 73 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 KRTAP4-1Q9BYQ7 146 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 ACACAQ13085 2346 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 FAT2Q9NYQ8 4349 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 FLNCQ14315 2725 aa1.01□□□□□ -2.25
TOPBP1-210ENST00000572787 GCN1Q92616 2671 aaKnown RBP1□□□□□ -2.25
TOPBP1-210ENST00000572787 ZFYVE26Q68DK2 2539 aa1□□□□□ -2.25
TOPBP1-210ENST00000572787 CCDC168Q8NDH2 2452 aa1□□□□□ -2.25
TOPBP1-210ENST00000572787 LYSTQ99698 3801 aa1□□□□□ -2.25
TOPBP1-210ENST00000572787 USP24Q9UPU5 2620 aa0.99□□□□□ -2.25
TOPBP1-210ENST00000572787 RHPN1-AS1Q9BWJ2 59 aa0.99□□□□□ -2.25
TOPBP1-210ENST00000572787 SETXQ7Z333 2677 aaKnown RBP0.98□□□□□ -2.25
TOPBP1-210ENST00000572787 SPRR2BP35325 72 aa0.98□□□□□ -2.25
TOPBP1-210ENST00000572787 KRTAP21-1Q3LI58 79 aa0.98□□□□□ -2.25
TOPBP1-210ENST00000572787 KRTAP8-1Q8IUC2 63 aa0.98□□□□□ -2.25
TOPBP1-210ENST00000572787 SACSQ9NZJ4 4579 aa0.97□□□□□ -2.25
TOPBP1-210ENST00000572787 APC2O95996 2303 aa0.97□□□□□ -2.25
TOPBP1-210ENST00000572787 STAB1Q9NY15 2570 aa0.97□□□□□ -2.25
TOPBP1-210ENST00000572787 MTORP42345 2549 aa0.97□□□□□ -2.25
TOPBP1-210ENST00000572787 VPS13BQ7Z7G8 4022 aa0.96□□□□□ -2.26
TOPBP1-210ENST00000572787 NSD1Q96L73 2696 aaPredicted RBP0.95□□□□□ -2.26
TOPBP1-210ENST00000572787 KMT2AQ03164 3969 aa0.95□□□□□ -2.26
TOPBP1-210ENST00000572787 SPTBN4Q9H254 2564 aa0.95□□□□□ -2.26
TOPBP1-210ENST00000572787 HUWE1Q7Z6Z7 4374 aaKnown RBP0.95□□□□□ -2.26
TOPBP1-210ENST00000572787 DNAH11Q96DT5 4516 aa0.95□□□□□ -2.26
TOPBP1-210ENST00000572787 CRYBG3Q68DQ2 2970 aa0.94□□□□□ -2.26
TOPBP1-210ENST00000572787 EPG5Q9HCE0 2579 aa0.94□□□□□ -2.26
TOPBP1-210ENST00000572787 RIF1Q5UIP0 2472 aaKnown RBP0.93□□□□□ -2.26
TOPBP1-210ENST00000572787 TACC2O95359 2948 aa0.92□□□□□ -2.26
TOPBP1-210ENST00000572787 FAM186AA6NE01 2351 aa0.91□□□□□ -2.26
TOPBP1-210ENST00000572787 TENM1Q9UKZ4 2725 aa0.91□□□□□ -2.26
TOPBP1-210ENST00000572787 VPS13DQ5THJ4 4388 aa0.91□□□□□ -2.26
TOPBP1-210ENST00000572787 ZZEF1O43149 2961 aa0.9□□□□□ -2.26
TOPBP1-210ENST00000572787 MYCBP2O75592 4640 aa0.9□□□□□ -2.26
TOPBP1-210ENST00000572787 FLNBO75369 2602 aaKnown RBP0.9□□□□□ -2.26
TOPBP1-210ENST00000572787 USP9YO00507 2555 aaPredicted RBP0.9□□□□□ -2.27
TOPBP1-210ENST00000572787 PKD1P98161 4303 aa0.9□□□□□ -2.27
TOPBP1-210ENST00000572787 MT1AP04731 61 aa0.89□□□□□ -2.27
TOPBP1-210ENST00000572787 FCGBPQ9Y6R7 5405 aaPredicted RBP0.89□□□□□ -2.27
TOPBP1-210ENST00000572787 DMXL1Q9Y485 3027 aa0.89□□□□□ -2.27
TOPBP1-210ENST00000572787 SPRR2AP35326 72 aa0.88□□□□□ -2.27
TOPBP1-210ENST00000572787 ITPR3Q14573 2671 aa0.88□□□□□ -2.27
TOPBP1-210ENST00000572787 ANKRD11Q6UB99 2663 aaPredicted RBP0.88□□□□□ -2.27
TOPBP1-210ENST00000572787 FRYQ5TBA9 3013 aa0.88□□□□□ -2.27
TOPBP1-210ENST00000572787 LRRK2Q5S007 2527 aa0.87□□□□□ -2.27
TOPBP1-210ENST00000572787 SONP18583 2426 aaKnown RBP0.87□□□□□ -2.27
TOPBP1-210ENST00000572787 ANKHD1Q8IWZ3 2542 aaKnown RBP0.86□□□□□ -2.27
TOPBP1-210ENST00000572787 A0A096LNI7 61 aa0.86□□□□□ -2.27
TOPBP1-210ENST00000572787 DCHS2Q6V1P9 2916 aa0.86□□□□□ -2.27
TOPBP1-210ENST00000572787 ACACBO00763 2458 aa0.85□□□□□ -2.27
TOPBP1-210ENST00000572787 UTP20O75691 2785 aaKnown RBP0.85□□□□□ -2.27
TOPBP1-210ENST00000572787 DEFB124Q8NES8 71 aa0.85□□□□□ -2.27
TOPBP1-210ENST00000572787 DNAH3Q8TD57 4116 aa0.85□□□□□ -2.27
TOPBP1-210ENST00000572787 COL12A1Q99715 3063 aa0.85□□□□□ -2.27
TOPBP1-210ENST00000572787 NCOR2Q9Y618 2525 aa0.84□□□□□ -2.27
TOPBP1-210ENST00000572787 APELAP0DMC3 54 aa0.83□□□□□ -2.28
TOPBP1-210ENST00000572787 KRTAP6-2Q3LI66 62 aa0.83□□□□□ -2.28
TOPBP1-210ENST00000572787 CACNA1AO00555 2505 aa0.83□□□□□ -2.28
TOPBP1-210ENST00000572787 DNAH2Q9P225 4427 aa0.82□□□□□ -2.28
TOPBP1-210ENST00000572787 DYNC2H1Q8NCM8 4307 aaKnown RBP0.82□□□□□ -2.28
TOPBP1-210ENST00000572787 ANK3Q12955 4377 aaKnown RBP0.82□□□□□ -2.28
TOPBP1-210ENST00000572787 COL7A1Q02388 2944 aa0.82□□□□□ -2.28
TOPBP1-210ENST00000572787 RANBP2P49792 3224 aaKnown RBP0.81□□□□□ -2.28
TOPBP1-210ENST00000572787 HRNRQ86YZ3 2850 aaPredicted RBP0.81□□□□□ -2.28
TOPBP1-210ENST00000572787 SMR3BP02814 79 aaPredicted RBP0.81□□□□□ -2.28
TOPBP1-210ENST00000572787 NBEAL2Q6ZNJ1 2754 aa0.81□□□□□ -2.28
TOPBP1-210ENST00000572787 HIVEP1P15822 2718 aa0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 LPAP08519 4548 aa0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 LRP1Q07954 4544 aaKnown RBP0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 DEFB1P60022 68 aa0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 PKHD1L1Q86WI1 4243 aa0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 MGAQ8IWI9 3026 aa0.8□□□□□ -2.28
TOPBP1-210ENST00000572787 KRTAP19-5Q3LI72 72 aa0.79□□□□□ -2.28
TOPBP1-210ENST00000572787 CELSR3Q9NYQ7 3312 aa0.79□□□□□ -2.28
TOPBP1-210ENST00000572787 NBEAQ8NFP9 2946 aa0.78□□□□□ -2.28
TOPBP1-210ENST00000572787 SPG11Q96JI7 2443 aa0.78□□□□□ -2.28
TOPBP1-210ENST00000572787 CUBNO60494 3623 aa0.78□□□□□ -2.28
TOPBP1-210ENST00000572787 HTN1P15515 57 aa0.78□□□□□ -2.28
TOPBP1-210ENST00000572787 DEFB136Q30KP8 78 aa0.78□□□□□ -2.28
TOPBP1-210ENST00000572787 HSPG2P98160 4391 aa0.78□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms