RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 ZZEF1O43149 2961 aa3.83□□□□□ -1.8
CNOT1-216ENST00000569240 C10orf95Q9H7T3 257 aa3.83□□□□□ -1.8
CNOT1-216ENST00000569240 KRTAP10-1P60331 282 aa3.82□□□□□ -1.8
CNOT1-216ENST00000569240 CELSR1Q9NYQ6 3014 aa3.81□□□□□ -1.8
CNOT1-216ENST00000569240 NBEAL1Q6ZS30 2694 aa3.79□□□□□ -1.8
CNOT1-216ENST00000569240 FLNAP21333 2647 aaKnown RBP3.79□□□□□ -1.8
CNOT1-216ENST00000569240 BSNQ9UPA5 3926 aa3.78□□□□□ -1.8
CNOT1-216ENST00000569240 MGAM2Q2M2H8 2515 aa3.78□□□□□ -1.8
CNOT1-216ENST00000569240 TRANK1O15050 2925 aa3.78□□□□□ -1.8
CNOT1-216ENST00000569240 USP24Q9UPU5 2620 aa3.78□□□□□ -1.8
CNOT1-216ENST00000569240 UNC79Q9P2D8 2635 aa3.78□□□□□ -1.8
CNOT1-216ENST00000569240 INE1O15225 51 aa3.77□□□□□ -1.81
CNOT1-216ENST00000569240 CRYBG3Q68DQ2 2970 aa3.76□□□□□ -1.81
CNOT1-216ENST00000569240 ASH1LQ9NR48 2969 aaKnown RBP3.76□□□□□ -1.81
CNOT1-216ENST00000569240 ATRQ13535 2644 aa3.75□□□□□ -1.81
CNOT1-216ENST00000569240 KRTAP10-2P60368 255 aa3.74□□□□□ -1.81
CNOT1-216ENST00000569240 TACC2O95359 2948 aa3.74□□□□□ -1.81
CNOT1-216ENST00000569240 M0R2T5 61 aa3.74□□□□□ -1.81
CNOT1-216ENST00000569240 CHD9Q3L8U1 2897 aa3.73□□□□□ -1.81
CNOT1-216ENST00000569240 HELZ2Q9BYK8 2649 aaKnown RBP3.73□□□□□ -1.81
CNOT1-216ENST00000569240 LYSTQ99698 3801 aa3.71□□□□□ -1.82
CNOT1-216ENST00000569240 TRRAPQ9Y4A5 3859 aa3.7□□□□□ -1.82
CNOT1-216ENST00000569240 ANK2Q01484 3957 aa3.7□□□□□ -1.82
CNOT1-216ENST00000569240 Q5VSD8 79 aa3.7□□□□□ -1.82
CNOT1-216ENST00000569240 ITPR3Q14573 2671 aa3.7□□□□□ -1.82
CNOT1-216ENST00000569240 STAB1Q9NY15 2570 aa3.69□□□□□ -1.82
CNOT1-216ENST00000569240 GCN1Q92616 2671 aaKnown RBP3.69□□□□□ -1.82
CNOT1-216ENST00000569240 KRTAP1-4P0C5Y4 121 aa3.67□□□□□ -1.82
CNOT1-216ENST00000569240 KRTAP13-4Q3LI77 160 aa3.67□□□□□ -1.82
CNOT1-216ENST00000569240 PRO2289Q9P1D8 64 aa3.67□□□□□ -1.82
CNOT1-216ENST00000569240 KRTAP15-1Q3LI76 137 aa3.66□□□□□ -1.82
CNOT1-216ENST00000569240 STAB2Q8WWQ8 2551 aa3.65□□□□□ -1.82
CNOT1-216ENST00000569240 TPRXLQ17RH7 258 aa3.65□□□□□ -1.82
CNOT1-216ENST00000569240 KRTAP10-8P60410 259 aa3.64□□□□□ -1.83
CNOT1-216ENST00000569240 NOTCH1P46531 2555 aa3.64□□□□□ -1.83
CNOT1-216ENST00000569240 MAST4O15021 2626 aa3.63□□□□□ -1.83
CNOT1-216ENST00000569240 PRRC2CQ9Y520 2896 aaKnown RBP3.63□□□□□ -1.83
CNOT1-216ENST00000569240 FLNBO75369 2602 aaKnown RBP3.62□□□□□ -1.83
CNOT1-216ENST00000569240 KMT2BQ9UMN6 2715 aaPredicted RBP3.61□□□□□ -1.83
CNOT1-216ENST00000569240 CHD6Q8TD26 2715 aa3.6□□□□□ -1.83
CNOT1-216ENST00000569240 AKAP13Q12802 2813 aa3.6□□□□□ -1.83
CNOT1-216ENST00000569240 NSD1Q96L73 2696 aaPredicted RBP3.6□□□□□ -1.83
CNOT1-216ENST00000569240 HECTD1Q9ULT8 2610 aa3.6□□□□□ -1.83
CNOT1-216ENST00000569240 XP32Q5T750 250 aa3.6□□□□□ -1.83
CNOT1-216ENST00000569240 KRTAP12-1P59990 96 aa3.59□□□□□ -1.83
CNOT1-216ENST00000569240 KRTAP23-1A1A580 65 aa3.58□□□□□ -1.84
CNOT1-216ENST00000569240 LRBAP50851 2863 aa3.56□□□□□ -1.84
CNOT1-216ENST00000569240 COL6A5A8TX70 2615 aa3.55□□□□□ -1.84
CNOT1-216ENST00000569240 KRTAP12-2P59991 146 aa3.55□□□□□ -1.84
CNOT1-216ENST00000569240 ZNF469Q96JG9 3925 aaPredicted RBP3.54□□□□□ -1.84
CNOT1-216ENST00000569240 ITPR1Q14643 2758 aa3.52□□□□□ -1.85
CNOT1-216ENST00000569240 DCHS2Q6V1P9 2916 aa3.51□□□□□ -1.85
CNOT1-216ENST00000569240 MAP1AP78559 2803 aaPredicted RBP3.51□□□□□ -1.85
CNOT1-216ENST00000569240 TEP1Q99973 2627 aaKnown RBP3.51□□□□□ -1.85
CNOT1-216ENST00000569240 BAHCC1Q9P281 2608 aa3.49□□□□□ -1.85
CNOT1-216ENST00000569240 SETXQ7Z333 2677 aaKnown RBP3.48□□□□□ -1.85
CNOT1-216ENST00000569240 KRTAP10-6P60371 365 aaPredicted RBP3.48□□□□□ -1.85
CNOT1-216ENST00000569240 CFAP46Q8IYW2 2715 aa3.48□□□□□ -1.85
CNOT1-216ENST00000569240 NBEAL2Q6ZNJ1 2754 aa3.48□□□□□ -1.85
CNOT1-216ENST00000569240 ZNF292O60281 2723 aa3.46□□□□□ -1.86
CNOT1-216ENST00000569240 KRTAP3-1Q9BYR8 98 aa3.46□□□□□ -1.86
CNOT1-216ENST00000569240 UBR5O95071 2799 aaPredicted RBP3.43□□□□□ -1.86
CNOT1-216ENST00000569240 NIPBLQ6KC79 2804 aaeCLIP3.41□□□□□ -1.861e-11■■■□□ 15.4
CNOT1-216ENST00000569240 TEX15Q9BXT5 2789 aa3.41□□□□□ -1.86
CNOT1-216ENST00000569240 KRTAP21-3Q3LHN1 58 aa3.39□□□□□ -1.87
CNOT1-216ENST00000569240 IGSF10Q6WRI0 2623 aa3.39□□□□□ -1.87
CNOT1-216ENST00000569240 APCP25054 2843 aa3.38□□□□□ -1.87
CNOT1-216ENST00000569240 FRAS1Q86XX4 4008 aa3.36□□□□□ -1.87
CNOT1-216ENST00000569240 OTOGQ6ZRI0 2925 aa3.35□□□□□ -1.87
CNOT1-216ENST00000569240 KRTAP3-2Q9BYR7 98 aa3.34□□□□□ -1.87
CNOT1-216ENST00000569240 TGP01266 2768 aa3.33□□□□□ -1.88
CNOT1-216ENST00000569240 UTP20O75691 2785 aaKnown RBP3.31□□□□□ -1.88
CNOT1-216ENST00000569240 ITPR2Q14571 2701 aa3.3□□□□□ -1.88
CNOT1-216ENST00000569240 CMYA5Q8N3K9 4069 aa3.27□□□□□ -1.89
CNOT1-216ENST00000569240 CELSR2Q9HCU4 2923 aa3.27□□□□□ -1.89
CNOT1-216ENST00000569240 HECTD4Q9Y4D8 3996 aa3.25□□□□□ -1.89
CNOT1-216ENST00000569240 KRTAP10-10P60014 251 aa3.25□□□□□ -1.89
CNOT1-216ENST00000569240 KRTAP3-3Q9BYR6 98 aa3.25□□□□□ -1.89
CNOT1-216ENST00000569240 FBN1P35555 2871 aaKnown RBP3.25□□□□□ -1.89
CNOT1-216ENST00000569240 TENM2Q9NT68 2774 aa3.19□□□□□ -1.9
CNOT1-216ENST00000569240 HIVEP1P15822 2718 aa3.19□□□□□ -1.9
CNOT1-216ENST00000569240 KMT2AQ03164 3969 aa3.18□□□□□ -1.9
CNOT1-216ENST00000569240 A0A1B0GVY2 172 aa3.18□□□□□ -1.9
CNOT1-216ENST00000569240 HRNRQ86YZ3 2850 aaPredicted RBP3.17□□□□□ -1.9
CNOT1-216ENST00000569240 KRTAP19-4Q3LI73 84 aa3.16□□□□□ -1.9
CNOT1-216ENST00000569240 FLNCQ14315 2725 aa3.16□□□□□ -1.9
CNOT1-216ENST00000569240 SRRM2Q9UQ35 2752 aaKnown RBP3.15□□□□□ -1.9
CNOT1-216ENST00000569240 TENM3Q9P273 2699 aa3.14□□□□□ -1.91
CNOT1-216ENST00000569240 DNAH7Q8WXX0 4024 aa3.12□□□□□ -1.91
CNOT1-216ENST00000569240 KRTAP10-12P60413 245 aa3.1□□□□□ -1.91
CNOT1-216ENST00000569240 KRTAP12-3P60328 96 aa3.1□□□□□ -1.91
CNOT1-216ENST00000569240 VPS13DQ5THJ4 4388 aa3.09□□□□□ -1.92
CNOT1-216ENST00000569240 COL7A1Q02388 2944 aa3.07□□□□□ -1.92
CNOT1-216ENST00000569240 PDZD2O15018 2839 aa3.07□□□□□ -1.92
CNOT1-216ENST00000569240 TENM1Q9UKZ4 2725 aa3.07□□□□□ -1.92
CNOT1-216ENST00000569240 TENM4Q6N022 2769 aa3.05□□□□□ -1.92
CNOT1-216ENST00000569240 ZANQ9Y493 2812 aa3.04□□□□□ -1.92
CNOT1-216ENST00000569240 FBN2P35556 2912 aa2.97□□□□□ -1.93
CNOT1-216ENST00000569240 LCE3AQ5TA76 89 aa2.96□□□□□ -1.94
CNOT1-216ENST00000569240 NF1P21359 2839 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms